Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001206.1

Orthogroup ID

OG0002644

Physical Location & Seq

Genomic Coordinates Forward (+)

103206 .. 105755

Gene Structure 2550 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atgtggaagggatcagggaacgagaatgaggtcttcgatgaggacgaagagaaaagtttcctgcatggcatagaggacgttgtggatttgaagtgtttacagtggaattgtggaagcaaggagccagtgtttgtccgagaaaggctgaaggacgtaatgactgatatatgcctagagagaaatatgaagggagctgcagcagctattgagcttggtgagtccaaaatcggttcaacaccaagaagcggggtgaacagaggggcagccatcctcgacttcattctaaggataatagcgtttcttggtaccttagtgagtgctatagctatgggaacaaccagggaaagacttccttttttcacacagttccttcagtttagggctgagtataatgatcttccaacatttacgttctttgtggttgccaattccatcgtatgtgcctatctgatgttttctctagctctttctatcttccacatcataagaagtaatgcaaagaacagtagaataatcttgatcttcttcgacacgggaatgctggctcttctgacagcaggtgcctcggccgccacagctattgtgtacttagcacacaaggggaatgccaaggcaaactggttcccaatctgtcaacaattcaattccttctgcgaacgaatctctggctctttgattggatctttcgtggcaattgttattttcgttctcttgatcttaatgtcagctgccgccctttctcggcgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0007043 GO:0008150 GO:0009505 GO:0009531 GO:0009987 GO:0016020 GO:0016043 GO:0022607 GO:0030312 GO:0034329 GO:0034330 GO:0042545 GO:0042802 GO:0042803 GO:0044085 GO:0044426 GO:0044462 GO:0044464 GO:0045216 GO:0045229 GO:0046983 GO:0048037 GO:0048226 GO:0051536 GO:0051540 GO:0071554 GO:0071555 GO:0071840 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF588

Protein Analysis

249

Amino Acids

27.54

Weight (kDa)

7.6

Isoelectric Point (pI)

33.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CASP_dom	PF04535	86 - 233	1.3e-47	Casparian strip membrane protein domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002644)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G15290
fragaria_vesca	FvH4_4g31110 FvH4_6g48140
malus_domestica	MD09G1053500.v1.1 MD13G1069600.v1.1 MD13G1069700.v1.1 MD16G1070000.v1.1
prunus_persica	Prupe.1G277100_v2.0.a1 Prupe.1G277100_v2.0.a1 Prupe.3G264800_v2.0.a1 Prupe.3G264900_v2.0.a1
pyrus_communis	pycom13g06250 pycom16g06100
rosa_chinensis	RchiOBHm_Chr2g0167481 RchiOBHm_Chr4g0439491
rosa_laevigata	RLG00000006266 RLG00000021723
rosa_multiflora	Rmu_sc0001206.1_g000035 Rmu_sc0007276.1_g000008 Rmu_sc0043018.1_g000002
rosa_roxburghii	Rroxscaffold_2G00083450 Rroxscaffold_2G00083460 Rroxscaffold_5G00380400
rosa_rugosa	Rorug02G0530500 Rorug04G0318700 Rorug04G0318800
rosa_samantha	Rh2AG597700 Rh2AG597800 Rh2BG609200 Rh2BG609300 Rh2CG580100 Rh2CG580200 Rh2DG620500 Rh2DG620600 Rh4AG370000 Rh4BG382000 Rh4CG396600 Rh4DG376700
rosa_wichuraiana	Rw2G049740 Rw4G031550

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	548
Acc36I	ACCTGC	1 cut(s)	548
Acc65I	GGTACC	1 cut(s)	305
AccB1I	GGYRCC	2 cut(s)	305, 560
AciI	CCGC	3 cut(s)	246, 570, 732
AclWI	GGATC	2 cut(s)	19, 688
AcoI	YGGCCR	1 cut(s)	567
AcuI	CTGAAG	2 cut(s)	167, 356
AfaI	GTAC	2 cut(s)	307, 587
AfiI	CCNNNNNNNGG	2 cut(s)	245, 741
AgsI	TTSAA	3 cut(s)	91, 234, 643
AjnI	CCWGG	1 cut(s)	338
AluBI	AGCT	7 cut(s)	194, 203, 211, 326, 464, 578, 728
AluI	AGCT	7 cut(s)	194, 203, 211, 326, 464, 578, 728
AlwI	GGATC	2 cut(s)	19, 688
AoxI	GGCC	1 cut(s)	567
ApeKI	GCWGC	5 cut(s)	194, 197, 200, 263, 728
Asp700I	GAANNNNTTC	2 cut(s)	56, 348
Asp718I	GGTACC	1 cut(s)	305
AsuHPI	GGTGA	2 cut(s)	227, 262
BaeI	ACNNNNGTAYC	2 cut(s)	297, 330
BanI	GGYRCC	2 cut(s)	305, 560
BbsI	GAAGAC	1 cut(s)	25
BbvI	GCAGC	5 cut(s)	181, 209, 212, 275, 715
BccI	CCATC	2 cut(s)	275, 440
BcgI	CGANNNNNNTGC	2 cut(s)	546, 580
BciT130I	CCWGG	1 cut(s)	340
BfaI	CTAG	2 cut(s)	173, 461
BfmI	CTRYAG	2 cut(s)	195, 321
BfuAI	ACCTGC	1 cut(s)	548
BisI	GCNGC	7 cut(s)	195, 198, 201, 264, 570, 729, 732
BlsI	GCNGC	7 cut(s)	196, 199, 202, 265, 571, 730, 733
Bme1390I	CCNGG	1 cut(s)	340
BmiI	GGNNCC	4 cut(s)	123, 307, 562, 623
BmrFI	CCNGG	1 cut(s)	340
BpiI	GAAGAC	1 cut(s)	25
BsaJI	CCNNGG	3 cut(s)	339, 564, 609
BsaXI	ACNNNNNCTCC	2 cut(s)	113, 143
Bsc4I	CCNNNNNNNGG	2 cut(s)	245, 741
Bse1I	ACTGG	2 cut(s)	125, 623
BseBI	CCWGG	1 cut(s)	340
BseDI	CCNNGG	3 cut(s)	339, 564, 609
BseGI	GGATG	1 cut(s)	267
BseLI	CCNNNNNNNGG	2 cut(s)	245, 741
BseMII	CTCAG	1 cut(s)	375
BseNI	ACTGG	2 cut(s)	125, 623
BseX3I	CGGCCG	1 cut(s)	567
BseXI	GCAGC	5 cut(s)	181, 209, 212, 275, 715
Bsh1285I	CGRYCG	1 cut(s)	570
BshFI	GGCC	1 cut(s)	569
BshNI	GGYRCC	2 cut(s)	305, 560
BsiEI	CGRYCG	1 cut(s)	570
BslI	CCNNNNNNNGG	2 cut(s)	245, 741
BsmI	GAATGC	2 cut(s)	543, 610
BsnI	GGCC	1 cut(s)	569
Bsp143I	GATC	5 cut(s)	11, 394, 519, 680, 714
BspACI	CCGC	3 cut(s)	246, 570, 732
BspANI	GGCC	1 cut(s)	569
BspCNI	CTCAG	1 cut(s)	376
BspLI	GGNNCC	4 cut(s)	123, 307, 562, 623
BspMAI	CTGCAG	1 cut(s)	199
BspMI	ACCTGC	1 cut(s)	548
BspPI	GGATC	2 cut(s)	19, 688
BspQI	GCTCTTC	1 cut(s)	552
BspT107I	GGYRCC	2 cut(s)	305, 560
BsrI	ACTGG	2 cut(s)	125, 623
BssECI	CCNNGG	3 cut(s)	339, 564, 609
BssMI	GATC	5 cut(s)	11, 394, 519, 680, 714
BssT1I	CCWWGG	1 cut(s)	609
Bst2UI	CCWGG	1 cut(s)	340
Bst4CI	ACNGT	3 cut(s)	102, 366, 506
Bst6I	CTCTTC	2 cut(s)	42, 552
BstC8I	GCNNGC	1 cut(s)	543
BstDEI	CTNAG	4 cut(s)	284, 310, 384, 589
BstF5I	GGATG	1 cut(s)	267
BstKTI	GATC	5 cut(s)	14, 397, 522, 683, 717
BstMBI	GATC	5 cut(s)	11, 394, 519, 680, 714
BstMCI	CGRYCG	1 cut(s)	570
BstMWI	GCNNNNNNNGC	3 cut(s)	200, 569, 575
BstNI	CCWGG	1 cut(s)	340
BstSCI	CCNGG	1 cut(s)	338
BstSFI	CTRYAG	2 cut(s)	195, 321
BstV1I	GCAGC	5 cut(s)	181, 209, 212, 275, 715
BstV2I	GAAGAC	1 cut(s)	25
BstX2I	RGATCY	1 cut(s)	680
BstYI	RGATCY	1 cut(s)	680
BstZI	CGGCCG	1 cut(s)	567
BsuRI	GGCC	1 cut(s)	569
BtsCI	GGATG	1 cut(s)	267
BtsIMutI	CAGTG	2 cut(s)	107, 132
BveI	ACCTGC	1 cut(s)	548
Cac8I	GCNNGC	1 cut(s)	543
Csp6I	GTAC	2 cut(s)	306, 586
CspCI	CAANNNNNGTGG	2 cut(s)	562, 597
CviAII	CATG	1 cut(s)	65
CviQI	GTAC	2 cut(s)	306, 586
DdeI	CTNAG	4 cut(s)	284, 310, 384, 589
DpnI	GATC	5 cut(s)	13, 396, 521, 682, 716
DpnII	GATC	5 cut(s)	11, 394, 519, 680, 714
EaeI	YGGCCR	1 cut(s)	567
EagI	CGGCCG	1 cut(s)	567
Eam1104I	CTCTTC	2 cut(s)	42, 552
EarI	CTCTTC	2 cut(s)	42, 552
EclXI	CGGCCG	1 cut(s)	567
Eco130I	CCWWGG	1 cut(s)	609
Eco52I	CGGCCG	1 cut(s)	567
Eco57I	CTGAAG	2 cut(s)	167, 356
EcoRII	CCWGG	1 cut(s)	338
EcoT14I	CCWWGG	1 cut(s)	609
ErhI	CCWWGG	1 cut(s)	609
FaeI	CATG	1 cut(s)	68
FalI	AAGNNNNNCTT	2 cut(s)	337, 369
FatI	CATG	1 cut(s)	64
FauI	CCCGC	1 cut(s)	239
Fnu4HI	GCNGC	7 cut(s)	195, 198, 201, 264, 570, 729, 732
FokI	GGATG	1 cut(s)	254
Fsp4HI	GCNGC	7 cut(s)	195, 198, 201, 264, 570, 729, 732
FspBI	CTAG	2 cut(s)	173, 461
GluI	GCNGC	7 cut(s)	195, 198, 201, 264, 570, 729, 732
HaeIII	GGCC	1 cut(s)	569
Hin1II	CATG	1 cut(s)	68
HincII	GTYRAC	1 cut(s)	635
HindII	GTYRAC	1 cut(s)	635
HinfI	GANTC	2 cut(s)	218, 660
HphI	GGTGA	2 cut(s)	227, 262
Hpy166II	GTNNAC	4 cut(s)	98, 253, 586, 635
Hpy188I	TCNGA	3 cut(s)	137, 450, 552
Hpy188III	TCNNGA	2 cut(s)	517, 712
Hpy8I	GTNNAC	4 cut(s)	98, 253, 586, 635
HpyAV	CCTTC	4 cut(s)	142, 181, 380, 658
HpyCH4III	ACNGT	3 cut(s)	102, 366, 506
HpyCH4IV	ACGT	3 cut(s)	78, 153, 410
HpyCH4V	TGCA	3 cut(s)	64, 197, 497
HpyF10VI	GCNNNNNNNGC	3 cut(s)	200, 569, 575
HpyF3I	CTNAG	4 cut(s)	284, 310, 384, 589
HpySE526I	ACGT	3 cut(s)	78, 153, 410
Hsp92II	CATG	1 cut(s)	68
KpnI	GGTACC	1 cut(s)	309
Kzo9I	GATC	5 cut(s)	11, 394, 519, 680, 714
LguI	GCTCTTC	1 cut(s)	552
LmnI	GCTCC	2 cut(s)	121, 191
LpnPI	CCDG	8 cut(s)	74, 138, 325, 352, 527, 543, 604, 651
Lsp1109I	GCAGC	5 cut(s)	181, 209, 212, 275, 715
MaeI	CTAG	2 cut(s)	173, 461
MaeII	ACGT	3 cut(s)	78, 153, 410
MalI	GATC	5 cut(s)	13, 396, 521, 682, 716
MboI	GATC	5 cut(s)	11, 394, 519, 680, 714
MboII	GAAGA	7 cut(s)	25, 59, 389, 466, 514, 517, 539
MfeI	CAATTG	1 cut(s)	693
MflI	RGATCY	1 cut(s)	680
MluCI	AATT	5 cut(s)	106, 427, 638, 643, 693
MlyI	GAGTC	1 cut(s)	227
MmeI	TCCRAC	1 cut(s)	425
MnlI	CCTC	6 cut(s)	22, 34, 67, 251, 281, 574
MroXI	GAANNNNTTC	2 cut(s)	56, 348
MseI	TTAA	1 cut(s)	719
MslI	CAYNNNNRTG	1 cut(s)	536
MspA1I	CMGCKG	1 cut(s)	728
MspR9I	CCNGG	1 cut(s)	340
MunI	CAATTG	1 cut(s)	693
Mva1269I	GAATGC	2 cut(s)	543, 610
MvaI	CCWGG	1 cut(s)	340
MwoI	GCNNNNNNNGC	3 cut(s)	200, 569, 575
NdeII	GATC	5 cut(s)	11, 394, 519, 680, 714
NlaIII	CATG	1 cut(s)	68
NlaIV	GGNNCC	4 cut(s)	123, 307, 562, 623
NmeAIII	GCCGAG	2 cut(s)	545, 721
PaqCI	CACCTGC	1 cut(s)	548
PciSI	GCTCTTC	1 cut(s)	552
PcsI	WCGNNNNNNNCGW	1 cut(s)	42
PctI	GAATGC	2 cut(s)	543, 610
PdmI	GAANNNNTTC	2 cut(s)	56, 348
PfeI	GAWTC	1 cut(s)	660
PkrI	GCNGC	7 cut(s)	196, 199, 202, 265, 571, 730, 733
PleI	GAGTC	1 cut(s)	226
PpsI	GAGTC	1 cut(s)	226
Psp6I	CCWGG	1 cut(s)	338
PspGI	CCWGG	1 cut(s)	338
PspN4I	GGNNCC	4 cut(s)	123, 307, 562, 623
PstI	CTGCAG	1 cut(s)	199
PsuI	RGATCY	1 cut(s)	680
PvuII	CAGCTG	1 cut(s)	728
RsaI	GTAC	2 cut(s)	307, 587
RsaNI	GTAC	2 cut(s)	306, 586
RseI	CAYNNNNRTG	1 cut(s)	536
SapI	GCTCTTC	1 cut(s)	552
SaqAI	TTAA	1 cut(s)	719
SatI	GCNGC	7 cut(s)	195, 198, 201, 264, 570, 729, 732
Sau3AI	GATC	5 cut(s)	11, 394, 519, 680, 714
SchI	GAGTC	1 cut(s)	227
ScrFI	CCNGG	1 cut(s)	340
SfcI	CTRYAG	2 cut(s)	195, 321
SmiMI	CAYNNNNRTG	1 cut(s)	536
Sse9I	AATT	5 cut(s)	106, 427, 638, 643, 693
SsiI	CCGC	3 cut(s)	246, 570, 732
SspMI	CTAG	2 cut(s)	173, 461
StyD4I	CCNGG	1 cut(s)	338
StyI	CCWWGG	1 cut(s)	609
TaaI	ACNGT	3 cut(s)	102, 366, 506
TaiI	ACGT	3 cut(s)	81, 156, 413
TaqI	TCGA	3 cut(s)	36, 273, 528
TasI	AATT	5 cut(s)	106, 427, 638, 643, 693
TatI	WGTACW	1 cut(s)	585
TauI	GCSGC	2 cut(s)	572, 734
TfiI	GAWTC	1 cut(s)	660
Tru1I	TTAA	1 cut(s)	719
Tru9I	TTAA	1 cut(s)	719
TscAI	CASTG	2 cut(s)	107, 132
TseI	GCWGC	5 cut(s)	194, 197, 200, 263, 728
TspDTI	ATGAA	2 cut(s)	200, 268
TspRI	CASTG	2 cut(s)	107, 132
XmnI	GAANNNNTTC	2 cut(s)	56, 348
XspI	CTAG	2 cut(s)	173, 461

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.