Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001262.1

Orthogroup ID

OG0011614

Physical Location & Seq

Genomic Coordinates Forward (+)

39285 .. 40825

Gene Structure 1541 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 321 bp

atgttcctctctctctctctctcatttccctatttcttccctatttctgagaccaacaaccaaactgggtttggcaacaaggtgcttgaaatggctacagacacctacccacctccaccaccgtattataagctatacaaagattacttgcaagatcccaaatccgctcctgagccgctgccaccaattgaagggacatacgtttgctatggtgcttattacactacggatgacgtgcttccaaggttggaagaactgggggtgcgtcaactgtacccaaaaggcccaaatattggtacgtctacctccgggctagtttaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000122 GO:0000428 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006355 GO:0006357 GO:0008150 GO:0009889 GO:0009890 GO:0009892 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010629 GO:0016591 GO:0016592 GO:0019219 GO:0019222 GO:0030880 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031974 GO:0031981 GO:0032991 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0048519 GO:0048523 GO:0050789 GO:0050794 GO:0051171 GO:0051172 GO:0051252 GO:0051253 GO:0055029 GO:0060255 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0080090 GO:0090575 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000112 GO:2000113 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Med7

Protein Analysis

106

Amino Acids

11.9

Weight (kDa)

4.54

Isoelectric Point (pI)

47.21

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Med7	PF05983	34 - 95	2.4e-07	MED7 protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0011614)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr3g0478521
rosa_laevigata	RLG00000023641
rosa_multiflora	Rmu_sc0001262.1_g000010 Rmu_sc0008105.1_g000006
rosa_roxburghii	Rroxscaffold_6G00403490
rosa_rugosa	Rorug03G0165800 Rorug03G0166100
rosa_samantha	Rh3AG216300 Rh3AG216700 Rh3AG216800 Rh3AG216900 Rh3AG218000 Rh3AG256500 Rh3BG249500 Rh3CG245300 Rh3CG246900 Rh3CG291400 Rh3DG243400 Rh3DG296000 Rh7CG431200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	129
AccB7I	CCANNNNNTGG	1 cut(s)	293
AccBSI	CCGCTC	1 cut(s)	167
AccI	GTMKAC	1 cut(s)	302
AciI	CCGC	2 cut(s)	165, 176
AclWI	GGATC	1 cut(s)	149
AfaI	GTAC	2 cut(s)	275, 298
AfiI	CCNNNNNNNGG	2 cut(s)	191, 293
AgsI	TTSAA	2 cut(s)	89, 191
AjiI	CACGTC	1 cut(s)	235
AluBI	AGCT	1 cut(s)	133
AluI	AGCT	1 cut(s)	133
Alw26I	GTCTC	1 cut(s)	44
AlwI	GGATC	1 cut(s)	149
AoxI	GGCC	1 cut(s)	283
ApeKI	GCWGC	1 cut(s)	178
AspS9I	GGNCC	1 cut(s)	284
AsuC2I	CCSGG	1 cut(s)	310
BbvI	GCAGC	1 cut(s)	165
BcnI	CCSGG	1 cut(s)	310
BcoDI	GTCTC	1 cut(s)	44
BfaI	CTAG	1 cut(s)	314
BfmI	CTRYAG	1 cut(s)	96
BisI	GCNGC	2 cut(s)	176, 179
BlsI	GCNGC	2 cut(s)	177, 180
Bme1390I	CCNGG	1 cut(s)	310
BmgBI	CACGTC	1 cut(s)	235
BmgT120I	GGNCC	1 cut(s)	284
BmrFI	CCNGG	1 cut(s)	310
BmrI	ACTGGG	2 cut(s)	75, 266
BmuI	ACTGGG	2 cut(s)	75, 266
Bpu10I	CCTNAGC	1 cut(s)	171
BpuMI	CCSGG	1 cut(s)	310
BsaI	GGTCTC	1 cut(s)	44
BsaJI	CCNNGG	1 cut(s)	242
Bsc4I	CCNNNNNNNGG	2 cut(s)	191, 293
Bse1I	ACTGG	2 cut(s)	70, 261
BseDI	CCNNGG	1 cut(s)	242
BseGI	GGATG	1 cut(s)	235
BseLI	CCNNNNNNNGG	2 cut(s)	191, 293
BseMII	CTCAG	2 cut(s)	39, 162
BseNI	ACTGG	2 cut(s)	70, 261
BseXI	GCAGC	1 cut(s)	165
BshFI	GGCC	1 cut(s)	285
BsiSI	CCGG	1 cut(s)	309
BslFI	GGGAC	1 cut(s)	208
BslI	CCNNNNNNNGG	2 cut(s)	191, 293
BsmAI	GTCTC	1 cut(s)	44
BsmFI	GGGAC	1 cut(s)	208
BsnI	GGCC	1 cut(s)	285
Bso31I	GGTCTC	1 cut(s)	44
Bsp143I	GATC	1 cut(s)	154
BspACI	CCGC	2 cut(s)	165, 176
BspANI	GGCC	1 cut(s)	285
BspCNI	CTCAG	2 cut(s)	40, 163
BspPI	GGATC	1 cut(s)	149
BspTNI	GGTCTC	1 cut(s)	44
BsrBI	CCGCTC	1 cut(s)	167
BsrI	ACTGG	2 cut(s)	70, 261
BssECI	CCNNGG	1 cut(s)	242
BssMI	GATC	1 cut(s)	154
BssT1I	CCWWGG	1 cut(s)	242
Bst4CI	ACNGT	2 cut(s)	123, 273
BstDEI	CTNAG	2 cut(s)	48, 171
BstF5I	GGATG	1 cut(s)	235
BstKTI	GATC	1 cut(s)	157
BstMAI	GTCTC	1 cut(s)	44
BstMBI	GATC	1 cut(s)	154
BstSCI	CCNGG	1 cut(s)	308
BstSFI	CTRYAG	1 cut(s)	96
BstV1I	GCAGC	1 cut(s)	165
BstX2I	RGATCY	1 cut(s)	154
BstYI	RGATCY	1 cut(s)	154
BsuRI	GGCC	1 cut(s)	285
BtrI	CACGTC	1 cut(s)	235
BtsCI	GGATG	1 cut(s)	235
Cfr13I	GGNCC	1 cut(s)	284
CseI	GACGC	1 cut(s)	254
Csp6I	GTAC	2 cut(s)	274, 297
CviJI	RGCY	5 cut(s)	95, 133, 175, 285, 313
CviKI_1	RGCY	5 cut(s)	95, 133, 175, 285, 313
CviQI	GTAC	2 cut(s)	274, 297
DdeI	CTNAG	2 cut(s)	48, 171
DpnI	GATC	1 cut(s)	156
DpnII	GATC	1 cut(s)	154
Eco130I	CCWWGG	1 cut(s)	242
Eco31I	GGTCTC	1 cut(s)	44
EcoT14I	CCWWGG	1 cut(s)	242
ErhI	CCWWGG	1 cut(s)	242
FaiI	YATR	4 cut(s)	129, 136, 199, 210
FaqI	GGGAC	1 cut(s)	208
FblI	GTMKAC	1 cut(s)	302
Fnu4HI	GCNGC	2 cut(s)	176, 179
FokI	GGATG	1 cut(s)	242
Fsp4HI	GCNGC	2 cut(s)	176, 179
FspBI	CTAG	1 cut(s)	314
GluI	GCNGC	2 cut(s)	176, 179
HaeIII	GGCC	1 cut(s)	285
HapII	CCGG	1 cut(s)	309
HgaI	GACGC	1 cut(s)	254
HincII	GTYRAC	1 cut(s)	269
HindII	GTYRAC	1 cut(s)	269
HpaII	CCGG	1 cut(s)	309
Hpy166II	GTNNAC	2 cut(s)	269, 303
Hpy188I	TCNGA	1 cut(s)	49
Hpy188III	TCNNGA	1 cut(s)	170
Hpy8I	GTNNAC	2 cut(s)	269, 303
HpyAV	CCTTC	1 cut(s)	185
HpyCH4III	ACNGT	2 cut(s)	123, 273
HpyCH4IV	ACGT	3 cut(s)	201, 234, 299
HpyCH4V	TGCA	1 cut(s)	151
HpyF3I	CTNAG	2 cut(s)	48, 171
HpySE526I	ACGT	3 cut(s)	201, 234, 299
Kzo9I	GATC	1 cut(s)	154
LmnI	GCTCC	1 cut(s)	172
LpnPI	CCDG	3 cut(s)	51, 183, 242
Lsp1109I	GCAGC	1 cut(s)	165
MaeI	CTAG	1 cut(s)	314
MaeII	ACGT	3 cut(s)	201, 234, 299
MalI	GATC	1 cut(s)	156
MbiI	CCGCTC	1 cut(s)	167
MboI	GATC	1 cut(s)	154
MboII	GAAGA	2 cut(s)	28, 263
MfeI	CAATTG	1 cut(s)	186
MflI	RGATCY	1 cut(s)	154
MluCI	AATT	1 cut(s)	186
MmeI	TCCRAC	1 cut(s)	228
MnlI	CCTC	3 cut(s)	17, 123, 316
MseI	TTAA	1 cut(s)	319
MspA1I	CMGCKG	1 cut(s)	178
MspI	CCGG	1 cut(s)	309
MspR9I	CCNGG	1 cut(s)	310
MunI	CAATTG	1 cut(s)	186
NciI	CCSGG	1 cut(s)	310
NdeII	GATC	1 cut(s)	154
PflMI	CCANNNNNTGG	1 cut(s)	293
PkrI	GCNGC	2 cut(s)	177, 180
PsiI	TTATAA	1 cut(s)	129
PspPI	GGNCC	1 cut(s)	284
PsuI	RGATCY	1 cut(s)	154
RsaI	GTAC	2 cut(s)	275, 298
RsaNI	GTAC	2 cut(s)	274, 297
SaqAI	TTAA	1 cut(s)	319
SatI	GCNGC	2 cut(s)	176, 179
Sau3AI	GATC	1 cut(s)	154
Sau96I	GGNCC	1 cut(s)	284
ScrFI	CCNGG	1 cut(s)	310
SetI	ASST	9 cut(s)	84, 107, 115, 135, 204, 237, 248, 302, 308
SfcI	CTRYAG	1 cut(s)	96
SgeI	CNNG	9 cut(s)	78, 91, 98, 160, 164, 182, 247, 255, 269
Sse9I	AATT	1 cut(s)	186
SsiI	CCGC	2 cut(s)	165, 176
SspI	AATATT	1 cut(s)	292
SspMI	CTAG	1 cut(s)	314
StyD4I	CCNGG	1 cut(s)	308
StyI	CCWWGG	1 cut(s)	242
TaaI	ACNGT	2 cut(s)	123, 273
TaiI	ACGT	3 cut(s)	204, 237, 302
TasI	AATT	1 cut(s)	186
TauI	GCSGC	1 cut(s)	178
Tru1I	TTAA	1 cut(s)	319
Tru9I	TTAA	1 cut(s)	319
TseI	GCWGC	1 cut(s)	178
TspGWI	ACGGA	1 cut(s)	242
Van91I	CCANNNNNTGG	1 cut(s)	293
XcmI	CCANNNNNNNNNTGG	1 cut(s)	68
XmiI	GTMKAC	1 cut(s)	302
XspI	CTAG	1 cut(s)	314

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.