Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001342.1

Orthogroup ID

OG0006960

Physical Location & Seq

Genomic Coordinates Forward (+)

47628 .. 48223

Gene Structure 596 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 384 bp

ctgccacaaatcgtaagcgccagaccaccgcctgcaatagatcgccgccggcatcggaactccacagtctaccttagatcgcccccgcctgcatcgatctcccacctgacgcccatcacaacttcaaccccttcgccgagcttctccaccgatctcttcgaccgtcgcgccttctcctatcatccccccagtgactgcgtcctcgtctcgggatctaccaaaacccacccaaccccaaagcaccaaaatgattttgataagcaagaggaggtgttgaggcaatttgatttgaacacggcgtatgggccatgttttgggatcaccagatttgcacggtgggagcgtgcctgcaggctagggatggatccatatcaatcttcttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000228 GO:0000731 GO:0003674 GO:0003824 GO:0003887 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005657 GO:0005694 GO:0006139 GO:0006259 GO:0006260 GO:0006261 GO:0006281 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009987 GO:0016740 GO:0016772 GO:0016779 GO:0018130 GO:0019438 GO:0030894 GO:0031974 GO:0031981 GO:0032991 GO:0032993 GO:0033554 GO:0034061 GO:0034641 GO:0034645 GO:0034654 GO:0042575 GO:0043170 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0043233 GO:0043596 GO:0043601 GO:0043625 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044427 GO:0044428 GO:0044446 GO:0044454 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0061695 GO:0070013 GO:0071704 GO:0071897 GO:0090304 GO:0140097 GO:1901360 GO:1901362 GO:1901576 GO:1902494 GO:1990234

KEGG Pathways

Metabolic & Signaling

ko00230 ko00240 ko01100 ko03030 ko03410 ko03420 ko03430 ko03440 ko05166 map00230 map00240 map01100 map03030 map03410 map03420 map03430 map03440 map05166

Pfam Domains

Protein Families

DNA_pol_delta_4

Protein Analysis

127

Amino Acids

14.38

Weight (kDa)

9.5

Isoelectric Point (pI)

75.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DNA_pol_delta_4	PF04081	77 - 123	6.1e-16	DNA polymerase delta, subunit 4

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0006960)

Species	Orthologous Gene IDs
pyrus_communis	pycom02g00480 pycom13g19920
rosa_chinensis	RchiOBHm_Chr7g0229191
rosa_laevigata	RLG00000006185 RLG00000007431 RLG00000016147 RLG00000022439 RLG00000022857 RLG00000035073
rosa_multiflora	Rmu_sc0000014.1_g000037 Rmu_sc0000014.1_g000038 Rmu_sc0000800.1_g000015 Rmu_sc0001342.1_g000010 Rmu_sc0002983.1_g000064 Rmu_sc0008770.1_g000021 Rmu_sc0009252.1_g000009 Rmu_sc0009895.1_g000009 Rmu_sc0011973.1_g000004 Rmu_sc0014425.1_g000005 Rmu_ssc0000278.1_g000017
rosa_roxburghii	Rroxscaffold_2G00145630
rosa_samantha	Rh1AG324700 Rh2BG367500 Rh7AG407100 Rh7CG425300
rosa_wichuraiana	Rw7G004330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	314
AccI	GTMKAC	1 cut(s)	69
AccII	CGCG	1 cut(s)	168
AciI	CCGC	3 cut(s)	29, 46, 86
AclWI	GGATC	4 cut(s)	220, 326, 359, 372
AcyI	GRCGYC	1 cut(s)	110
AfiI	CCNNNNNNNGG	2 cut(s)	208, 314
AgsI	TTSAA	2 cut(s)	126, 292
AluBI	AGCT	1 cut(s)	141
AluI	AGCT	1 cut(s)	141
Alw26I	GTCTC	1 cut(s)	211
AlwI	GGATC	4 cut(s)	220, 326, 359, 372
AlwNI	CAGNNNCTG	1 cut(s)	195
Ama87I	CYCGRG	1 cut(s)	208
AoxI	GGCC	1 cut(s)	305
AspLEI	GCGC	2 cut(s)	20, 170
AspS9I	GGNCC	1 cut(s)	305
AsuHPI	GGTGA	1 cut(s)	313
AvaI	CYCGRG	1 cut(s)	208
BamHI	GGATCC	1 cut(s)	364
BccI	CCATC	2 cut(s)	122, 355
BceAI	ACGGC	1 cut(s)	312
BcoDI	GTCTC	1 cut(s)	211
BfaI	CTAG	1 cut(s)	356
BfmI	CTRYAG	1 cut(s)	349
BfoI	RGCGCY	1 cut(s)	21
BisI	GCNGC	1 cut(s)	46
BlsI	GCNGC	1 cut(s)	47
BmeT110I	CYCGRG	1 cut(s)	208
BmgT120I	GGNCC	1 cut(s)	305
BmiI	GGNNCC	1 cut(s)	366
BmrI	ACTGGG	1 cut(s)	183
BmsI	GCATC	2 cut(s)	61, 101
BmuI	ACTGGG	1 cut(s)	183
Bsa29I	ATCGAT	1 cut(s)	95
BsaBI	GATNNNNATC	1 cut(s)	369
BsaHI	GRCGYC	1 cut(s)	110
Bsc4I	CCNNNNNNNGG	2 cut(s)	208, 314
Bse118I	RCCGGY	1 cut(s)	48
Bse1I	ACTGG	1 cut(s)	189
Bse8I	GATNNNNATC	1 cut(s)	369
BseCI	ATCGAT	1 cut(s)	95
BseGI	GGATG	2 cut(s)	181, 366
BseJI	GATNNNNATC	1 cut(s)	369
BseLI	CCNNNNNNNGG	2 cut(s)	208, 314
BseNI	ACTGG	1 cut(s)	189
BseRI	GAGGAG	1 cut(s)	281
Bsh1236I	CGCG	1 cut(s)	168
Bsh1285I	CGRYCG	1 cut(s)	163
BshFI	GGCC	1 cut(s)	307
BshVI	ATCGAT	1 cut(s)	95
BsiEI	CGRYCG	1 cut(s)	163
BsiHKCI	CYCGRG	1 cut(s)	208
BsiSI	CCGG	1 cut(s)	49
BslI	CCNNNNNNNGG	2 cut(s)	208, 314
BsmAI	GTCTC	1 cut(s)	211
BsmBI	CGTCTC	1 cut(s)	211
BsnI	GGCC	1 cut(s)	307
BsoBI	CYCGRG	1 cut(s)	208
Bsp143I	GATC	7 cut(s)	40, 77, 96, 151, 212, 318, 364
BspACI	CCGC	3 cut(s)	29, 46, 86
BspANI	GGCC	1 cut(s)	307
BspDI	ATCGAT	1 cut(s)	95
BspFNI	CGCG	1 cut(s)	168
BspLI	GGNNCC	1 cut(s)	366
BspMAI	CTGCAG	1 cut(s)	353
BspPI	GGATC	4 cut(s)	220, 326, 359, 372
BsrFI	RCCGGY	1 cut(s)	48
BsrI	ACTGG	1 cut(s)	189
BssAI	RCCGGY	1 cut(s)	48
BssMI	GATC	7 cut(s)	40, 77, 96, 151, 212, 318, 364
BssNI	GRCGYC	1 cut(s)	110
Bst4CI	ACNGT	3 cut(s)	67, 164, 336
Bst6I	CTCTTC	1 cut(s)	161
BstACI	GRCGYC	1 cut(s)	110
BstC8I	GCNNGC	6 cut(s)	33, 50, 90, 345, 349, 353
BstDEI	CTNAG	1 cut(s)	74
BstF5I	GGATG	2 cut(s)	181, 366
BstFNI	CGCG	1 cut(s)	168
BstH2I	RGCGCY	1 cut(s)	21
BstHHI	GCGC	2 cut(s)	20, 170
BstKTI	GATC	7 cut(s)	43, 80, 99, 154, 215, 321, 367
BstMAI	GTCTC	1 cut(s)	211
BstMBI	GATC	7 cut(s)	40, 77, 96, 151, 212, 318, 364
BstMCI	CGRYCG	1 cut(s)	163
BstSFI	CTRYAG	1 cut(s)	349
BstUI	CGCG	1 cut(s)	168
BstX2I	RGATCY	2 cut(s)	212, 364
BstYI	RGATCY	2 cut(s)	212, 364
Bsu15I	ATCGAT	1 cut(s)	95
BsuRI	GGCC	1 cut(s)	307
BsuTUI	ATCGAT	1 cut(s)	95
BtsCI	GGATG	2 cut(s)	181, 366
BtsIMutI	CAGTG	1 cut(s)	196
Cac8I	GCNNGC	6 cut(s)	33, 50, 90, 345, 349, 353
CaiI	CAGNNNCTG	1 cut(s)	195
CfoI	GCGC	2 cut(s)	20, 170
Cfr10I	RCCGGY	1 cut(s)	48
Cfr13I	GGNCC	1 cut(s)	305
ClaI	ATCGAT	1 cut(s)	95
CseI	GACGC	2 cut(s)	118, 187
CviAII	CATG	1 cut(s)	309
CviJI	RGCY	3 cut(s)	141, 307, 355
CviKI_1	RGCY	3 cut(s)	141, 307, 355
DdeI	CTNAG	1 cut(s)	74
DpnI	GATC	7 cut(s)	42, 79, 98, 153, 214, 320, 366
DpnII	GATC	7 cut(s)	40, 77, 96, 151, 212, 318, 364
Eam1104I	CTCTTC	1 cut(s)	161
EarI	CTCTTC	1 cut(s)	161
Eco88I	CYCGRG	1 cut(s)	208
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	1 cut(s)	312
FaiI	YATR	3 cut(s)	303, 310, 370
FatI	CATG	1 cut(s)	308
FauI	CCCGC	1 cut(s)	93
FblI	GTMKAC	1 cut(s)	69
Fnu4HI	GCNGC	1 cut(s)	46
FokI	GGATG	2 cut(s)	168, 373
Fsp4HI	GCNGC	1 cut(s)	46
FspBI	CTAG	1 cut(s)	356
GlaI	GCGC	2 cut(s)	19, 169
GluI	GCNGC	1 cut(s)	46
HaeII	RGCGCY	1 cut(s)	21
HaeIII	GGCC	1 cut(s)	307
HapII	CCGG	1 cut(s)	49
HgaI	GACGC	2 cut(s)	118, 187
HhaI	GCGC	2 cut(s)	20, 170
Hin1I	GRCGYC	1 cut(s)	110
Hin1II	CATG	1 cut(s)	312
Hin6I	GCGC	2 cut(s)	18, 168
HinP1I	GCGC	2 cut(s)	18, 168
HpaII	CCGG	1 cut(s)	49
HphI	GGTGA	1 cut(s)	313
Hpy166II	GTNNAC	1 cut(s)	70
Hpy188I	TCNGA	1 cut(s)	57
Hpy188III	TCNNGA	2 cut(s)	210, 381
Hpy8I	GTNNAC	1 cut(s)	70
Hpy99I	CGWCG	1 cut(s)	168
HpyAV	CCTTC	2 cut(s)	141, 181
HpyCH4III	ACNGT	3 cut(s)	67, 164, 336
HpyCH4V	TGCA	4 cut(s)	35, 92, 332, 351
HpyF3I	CTNAG	1 cut(s)	74
Hsp92I	GRCGYC	1 cut(s)	110
Hsp92II	CATG	1 cut(s)	312
HspAI	GCGC	2 cut(s)	18, 168
KroI	GCCGGC	1 cut(s)	48
KroNI	GCCGGC	1 cut(s)	50
Kzo9I	GATC	7 cut(s)	40, 77, 96, 151, 212, 318, 364
LmnI	GCTCC	1 cut(s)	340
LpnPI	CCDG	9 cut(s)	34, 45, 62, 102, 119, 202, 337, 337, 361
LweI	GCATC	2 cut(s)	61, 101
MaeI	CTAG	1 cut(s)	356
MaeIII	GTNAC	1 cut(s)	191
MalI	GATC	7 cut(s)	42, 79, 98, 153, 214, 320, 366
MboI	GATC	7 cut(s)	40, 77, 96, 151, 212, 318, 364
MboII	GAAGA	2 cut(s)	148, 369
MflI	RGATCY	2 cut(s)	212, 364
MluCI	AATT	1 cut(s)	281
MnlI	CCTC	4 cut(s)	212, 259, 262, 270
MroNI	GCCGGC	1 cut(s)	48
MslI	CAYNNNNRTG	1 cut(s)	246
MspI	CCGG	1 cut(s)	49
MvnI	CGCG	1 cut(s)	168
NaeI	GCCGGC	1 cut(s)	50
NdeII	GATC	7 cut(s)	40, 77, 96, 151, 212, 318, 364
NgoMIV	GCCGGC	1 cut(s)	48
NlaIII	CATG	1 cut(s)	312
NlaIV	GGNNCC	1 cut(s)	366
NmeAIII	GCCGAG	1 cut(s)	162
NmuCI	GTSAC	1 cut(s)	191
PcsI	WCGNNNNNNNCGW	1 cut(s)	340
PdiI	GCCGGC	1 cut(s)	50
PflFI	GACNNNGTC	1 cut(s)	197
PflMI	CCANNNNNTGG	1 cut(s)	314
PkrI	GCNGC	1 cut(s)	47
PspN4I	GGNNCC	1 cut(s)	366
PspPI	GGNCC	1 cut(s)	305
PstI	CTGCAG	1 cut(s)	353
PstNI	CAGNNNCTG	1 cut(s)	195
PsuI	RGATCY	2 cut(s)	212, 364
PsyI	GACNNNGTC	1 cut(s)	197
RseI	CAYNNNNRTG	1 cut(s)	246
SatI	GCNGC	1 cut(s)	46
Sau3AI	GATC	7 cut(s)	40, 77, 96, 151, 212, 318, 364
Sau96I	GGNCC	1 cut(s)	305
SbfI	CCTGCAGG	1 cut(s)	353
SdaI	CCTGCAGG	1 cut(s)	353
SetI	ASST	4 cut(s)	75, 108, 143, 273
SfaNI	GCATC	2 cut(s)	61, 101
SfcI	CTRYAG	1 cut(s)	349
SmiMI	CAYNNNNRTG	1 cut(s)	246
Sse8387I	CCTGCAGG	1 cut(s)	353
Sse9I	AATT	1 cut(s)	281
SsiI	CCGC	3 cut(s)	29, 46, 86
SspMI	CTAG	1 cut(s)	356
TaaI	ACNGT	3 cut(s)	67, 164, 336
TaqI	TCGA	2 cut(s)	95, 159
TasI	AATT	1 cut(s)	281
TauI	GCSGC	1 cut(s)	48
TscAI	CASTG	1 cut(s)	196
TseFI	GTSAC	1 cut(s)	191
Tsp45I	GTSAC	1 cut(s)	191
TspRI	CASTG	1 cut(s)	196
Tth111I	GACNNNGTC	1 cut(s)	197
Van91I	CCANNNNNTGG	1 cut(s)	314
XmiI	GTMKAC	1 cut(s)	69
XspI	CTAG	1 cut(s)	356

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.