Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001787.1

Orthogroup ID

OG0002327

Physical Location & Seq

Genomic Coordinates Reverse (-)

89752 .. 96538

Gene Structure 6787 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2634 bp

atgcgggaatccgaaaatggttgccacgcaagcagtcacgaaattggtgatccccatgttgtgggtccccccactctagctgttttccaatcacactatatcggtggtgcaccctactcccttcacaactcagcttcagcttcggctcggctcggcttcctccacccgctcattgactctcctcggctacggagtccaaatggcaccgcttggtccagacaaaacccctcttctgctcggctcggcttatcaaagccggctgaatccttcaacgtcaaatctcacacattttccgagacggctccaaacgacgccgtcgcgatcttctccactaccagctctgctgacagaccggccggcgaggcttctccggcaatgtggaactcacgcgctccggtcgccgtacttgctgctcttctctactcagtagctctggtctctgctcagggatctagtcaatggaaaacactcacaggagatccgcctttggtcatagcacgagggggcttttcaggactctttcctggtttcagtacttcagcttacagcttcgcattgatcgctagtgtaccaaaagtggtattatattgtgaagtccaactgacaaaggatgcagctggaatttgctttccagatttgctgctgaataacaattcgaatgttattagtatgtttccaaagatggaaaatacatacccggttgatggagttccgactaaagggtggtttagcattgactatactctcaaagacctccttgcaaatgttattgttactcagggagtatttactcgatctaacaagtttgatggcaatataaacccaattctcaccgtagaagatgtggctatgcaattcagaccaccaggcttatggttgaatattaagaacaatatattcttcacgcaacacaacttgagtatgagaaactatgtgctttctgtatcaaagaaagtggttgtcaattttatctcatcaccagaggtggatttcctgaacagtattaaagcacgtgttagtccaagcgcaacaaagttgatctttaagtttcttgatgtagctgtgattgagccttcgacaaaccagacttatggttctctattgaagaatctcacatttatcaagacatttgccgctggaattatagttccaaaaacttacatatggcctgctgtggacaattatttagaacctcacactaacattgtttcggatgctcataaagcagggctcacagtatttgtgtcaggtttgtataatgacgtgccattccccttcaattacagttatgatccagtttctgagtacctgtcattctttgacaatggcgatttcagtgttgacggtgtgctgtctgactttcccataactccatcagcagccatagattgttatgctcacccagaaaagaatgcttcagtaaaagatacacctttggttatctcgaaagacggagatagtggggactaccctggctgtactgacttggcgtataagcatgcaattgcagatggtgtagatgtactcgattgtaacgtccaaatgtccaaggacgggataccattttgctcgagctctataaatcttattgatagcacaacagttgctcaaacaagctttagcagctacacaacggttgttcctgaaattaaggttggcagtggaatatatacctttagcctgacatgggatcagatcaaaacactacaaccaactatatcaaacccggcgaaaagttacatgttgtacaggaatccaagattcaagaatgctggcacttacttgaaactatctgaatttttgaccttggcaaagaattcgagttctctaattggtgtcttaattggcatagagtatgcggcatatcttgtagagaagaagggactaagtgtaacagatgcagtcatgactgagttggacaaagctggttttggtaatcagattgctctagatgtcatgattcagtccagcaatagttctgttctgatgaaatttaaggagaaaaacaagtataaacttgtttacaagattgacgaggacattggtgatgcccctgataaaactgttcaggacatcaagaagtttgccgatgctgtggtcatcaataaggcctctgtctttccagacaatcagttcttcctcagtggagcaaccaatgttgtaaagaagtttcatggatttaaactacttgtttatgttgaactcttcagcaatgagtttgtatctcaagcatgggacttcttctcagatccatccgtggagatcaattcatttgtgacgggggccgcagttgatggtgttatcacaggcttccccaaaacagctgctagatacaaaagaaaccggtgtttaagttataaagagaaaccttcctacatgagccctgttgagccaggcagtctgatacaagttgtttctcctctttacttgccacctgctgaggccccaaatccagccctgacagagagtgatgtggttgagccgcctttgccgtcagccgaaacagccttagctcctgggccagctggtggatctacagtagcaccaccacggccgaacgggcagcctaagactgctgcgtgcttctttctctcaactctggctatgctagttgccactctttttcttgtctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006952 GO:0006968 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009505 GO:0009506 GO:0009653 GO:0009664 GO:0009791 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010016 GO:0010026 GO:0010052 GO:0010053 GO:0010054 GO:0010103 GO:0010374 GO:0010383 GO:0010441 GO:0010442 GO:0016020 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0021700 GO:0022622 GO:0030054 GO:0030154 GO:0030243 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042578 GO:0043167 GO:0043169 GO:0043170 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0046872 GO:0048364 GO:0048367 GO:0048468 GO:0048469 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050896 GO:0051273 GO:0052541 GO:0055044 GO:0060560 GO:0071554 GO:0071555 GO:0071669 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

GDPD

Protein Analysis

877

Amino Acids

94.95

Weight (kDa)

5.96

Isoelectric Point (pI)

38.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	485 - 773	9e-20	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Orthologous Genes (Group: OG0002327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66970 AT1G66970 AT1G66970 AT4G26690
fragaria_vesca	FvH4_3g13670 FvH4_3g13670 FvH4_3g13670 FvH4_3g30290 FvH4_3g30290
malus_domestica	MD03G1190400.v1.1 MD11G1207100.v1.1
prunus_persica	Prupe.4G228400_v2.0.a1 Prupe.4G228400_v2.0.a1
pyrus_communis	pycom03g14330 pycom03g14370 pycom11g18010
rosa_chinensis	RchiOBHm_Chr5g0022921 RchiOBHm_Chr5g0056171
rosa_laevigata	RLG00000032682 RLG00000035057 RLG00000035060
rosa_multiflora	Rmu_sc0000680.1_g000027 Rmu_sc0001787.1_g000024 Rmu_sc0002675.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024130 Rroxscaffold_1G00056420
rosa_rugosa	Rorug05G0075500 Rorug05G0297800 Rorug05G0297800
rosa_samantha	Rh5AG162000 Rh5AG368900 Rh5BG161200 Rh5BG379900 Rh5CG175800 Rh5CG402700 Rh5DG162500 Rh5DG392700 Rh5DG392900
rosa_wichuraiana	Rw0G004450 Rw0G012690 Rw5G014580 Rw5G034630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2358
AarI	CACCTGC	1 cut(s)	2443
Acc36I	ACCTGC	1 cut(s)	2443
AccB1I	GGYRCC	1 cut(s)	203
AccB7I	CCANNNNNTGG	2 cut(s)	61, 2528
AccBSI	CCGCTC	1 cut(s)	169
AccII	CGCG	2 cut(s)	320, 390
AciI	CCGC	8 cut(s)	4, 167, 207, 482, 1134, 1859, 2286, 2483
AclWI	GGATC	7 cut(s)	44, 457, 473, 1286, 1698, 2243, 2539
AcoI	YGGCCR	2 cut(s)	354, 2552
AcsI	RAATTY	4 cut(s)	621, 1796, 1816, 1991
AcuI	CTGAAG	4 cut(s)	120, 522, 1401, 2191
AcvI	CACGTG	1 cut(s)	1013
AcyI	GRCGYC	1 cut(s)	312
AfaI	GTAC	7 cut(s)	405, 535, 570, 1307, 1480, 1524, 1748
AfiI	CCNNNNNNNGG	6 cut(s)	61, 704, 719, 1554, 1687, 2528
AflIII	ACRYGT	2 cut(s)	1012, 1740
AgeI	ACCGGT	1 cut(s)	2343
AgsI	TTSAA	7 cut(s)	271, 880, 1105, 1279, 1765, 1786, 2201
AjiI	CACGTC	1 cut(s)	1264
AjnI	CCWGG	5 cut(s)	523, 865, 1471, 2392, 2515
AjuI	GAANNNNNNNTTGG	2 cut(s)	1638, 1670
AloI	GAACNNNNNNTCC	2 cut(s)	1131, 1163
Alw21I	GWGCWC	2 cut(s)	112, 1577
Alw26I	GTCTC	2 cut(s)	290, 442
Alw44I	GTGCAC	1 cut(s)	108
AlwI	GGATC	7 cut(s)	44, 457, 473, 1286, 1698, 2243, 2539
AlwNI	CAGNNNCTG	1 cut(s)	1301
Ama87I	CYCGRG	1 cut(s)	1570
AoxI	GGCC	7 cut(s)	354, 1166, 2109, 2283, 2442, 2519, 2552
ApaLI	GTGCAC	1 cut(s)	108
ApeKI	GCWGC	8 cut(s)	410, 614, 640, 1379, 1623, 2324, 2563, 2576
ApoI	RAATTY	4 cut(s)	621, 1796, 1816, 1991
AsiGI	ACCGGT	1 cut(s)	2343
AspLEI	GCGC	2 cut(s)	392, 1028
AspS9I	GGNCC	5 cut(s)	65, 213, 2283, 2443, 2519
AsuC2I	CCSGG	2 cut(s)	698, 1727
AsuHPI	GGTGA	5 cut(s)	59, 823, 969, 1391, 2057
AsuII	TTCGAA	1 cut(s)	656
AvaI	CYCGRG	1 cut(s)	1570
AvaII	GGWCC	2 cut(s)	65, 213
BaeGI	GKGCMC	1 cut(s)	112
BanI	GGYRCC	1 cut(s)	203
BanII	GRGCYC	3 cut(s)	1233, 1577, 2384
BauI	CACGAG	1 cut(s)	498
BbrPI	CACGTG	1 cut(s)	1013
Bbv12I	GWGCWC	2 cut(s)	112, 1577
BbvCI	CCTCAGC	1 cut(s)	2439
BbvI	GCAGC	8 cut(s)	397, 626, 627, 1391, 1635, 2311, 2563, 2575
BccI	CCATC	7 cut(s)	676, 698, 803, 1381, 1505, 2260, 2288
BceAI	ACGGC	5 cut(s)	299, 315, 386, 2476, 2567
BcgI	CGANNNNNNTGC	2 cut(s)	1800, 1834
BciT130I	CCWGG	5 cut(s)	525, 867, 1473, 2394, 2517
BciVI	GTATCC	1 cut(s)	1551
BcnI	CCSGG	2 cut(s)	698, 1727
BcoDI	GTCTC	2 cut(s)	290, 442
BfaI	CTAG	6 cut(s)	77, 453, 564, 1949, 2328, 2609
BfmI	CTRYAG	1 cut(s)	2535
BfuAI	ACCTGC	1 cut(s)	2443
BfuI	GTATCC	1 cut(s)	1551
BglI	GCCNNNNNGGC	2 cut(s)	362, 2560
BmcAI	AGTACT	1 cut(s)	535
Bme1390I	CCNGG	7 cut(s)	525, 698, 867, 1473, 1727, 2394, 2517
Bme18I	GGWCC	2 cut(s)	65, 213
BmeT110I	CYCGRG	1 cut(s)	1570
BmgBI	CACGTC	1 cut(s)	1264
BmgT120I	GGNCC	5 cut(s)	65, 213, 2283, 2443, 2519
BmiI	GGNNCC	6 cut(s)	66, 67, 205, 303, 2284, 2445
BmrFI	CCNGG	7 cut(s)	525, 698, 867, 1473, 1727, 2394, 2517
BmsI	GCATC	5 cut(s)	601, 1204, 1888, 2038, 2080
Bpu10I	CCTNAGC	3 cut(s)	444, 2439, 2509
Bpu14I	TTCGAA	1 cut(s)	656
BpuEI	CTTGAG	2 cut(s)	937, 2211
BpuMI	CCSGG	2 cut(s)	698, 1727
BsaAI	YACGTR	1 cut(s)	1013
BsaHI	GRCGYC	1 cut(s)	312
BsaI	GGTCTC	1 cut(s)	442
BsaJI	CCNNGG	7 cut(s)	182, 1471, 1548, 1806, 2256, 2516, 2549
BsaWI	WCCGGW	2 cut(s)	394, 2343
Bsc4I	CCNNNNNNNGG	6 cut(s)	61, 704, 719, 1554, 1687, 2528
Bse118I	RCCGGY	4 cut(s)	256, 352, 356, 2343
Bse1I	ACTGG	1 cut(s)	1295
Bse3DI	GCAATG	2 cut(s)	381, 2218
BseBI	CCWGG	5 cut(s)	525, 867, 1473, 2394, 2517
BseDI	CCNNGG	7 cut(s)	182, 1471, 1548, 1806, 2256, 2516, 2549
BseGI	GGATG	3 cut(s)	616, 1219, 2252
BseLI	CCNNNNNNNGG	6 cut(s)	61, 704, 719, 1554, 1687, 2528
BseMI	GCAATG	2 cut(s)	381, 2218
BseMII	CTCAG	9 cut(s)	144, 438, 458, 791, 1293, 1902, 2155, 2259, 2430
BseNI	ACTGG	1 cut(s)	1295
BseRI	GAGGAG	2 cut(s)	171, 2409
BseSI	GKGCMC	1 cut(s)	112
BseX3I	CGGCCG	2 cut(s)	354, 2552
BseXI	GCAGC	8 cut(s)	397, 626, 627, 1391, 1635, 2311, 2563, 2575
Bsh1236I	CGCG	2 cut(s)	320, 390
Bsh1285I	CGRYCG	3 cut(s)	357, 399, 2555
BshFI	GGCC	7 cut(s)	356, 1168, 2111, 2285, 2444, 2521, 2554
BshNI	GGYRCC	1 cut(s)	203
BshTI	ACCGGT	1 cut(s)	2343
BsiEI	CGRYCG	3 cut(s)	357, 399, 2555
BsiHKAI	GWGCWC	2 cut(s)	112, 1577
BsiHKCI	CYCGRG	1 cut(s)	1570
BsiSI	CCGG	8 cut(s)	257, 353, 357, 371, 395, 698, 1727, 2344
BslFI	GGGAC	4 cut(s)	51, 1478, 1896, 2249
BslI	CCNNNNNNNGG	6 cut(s)	61, 704, 719, 1554, 1687, 2528
BsmAI	GTCTC	2 cut(s)	290, 442
BsmBI	CGTCTC	1 cut(s)	290
BsmFI	GGGAC	4 cut(s)	51, 1478, 1896, 2249
BsmI	GAATGC	2 cut(s)	1417, 1774
BsnI	GGCC	7 cut(s)	356, 1168, 2111, 2285, 2444, 2521, 2554
Bso31I	GGTCTC	1 cut(s)	442
BsoBI	CYCGRG	1 cut(s)	1570
Bsp119I	TTCGAA	1 cut(s)	656
Bsp1286I	GDGCHC	4 cut(s)	112, 1233, 1577, 2384
Bsp1407I	TGTACA	1 cut(s)	1746
Bsp68I	TCGCGA	1 cut(s)	320
BspACI	CCGC	8 cut(s)	4, 167, 207, 482, 1134, 1859, 2286, 2483
BspANI	GGCC	7 cut(s)	356, 1168, 2111, 2285, 2444, 2521, 2554
BspCNI	CTCAG	9 cut(s)	143, 437, 457, 790, 1294, 1903, 2154, 2258, 2431
BspFNI	CGCG	2 cut(s)	320, 390
BspHI	TCATGA	2 cut(s)	1905, 1956
BspLI	GGNNCC	6 cut(s)	66, 67, 205, 303, 2284, 2445
BspMI	ACCTGC	1 cut(s)	2443
BspPI	GGATC	7 cut(s)	44, 457, 473, 1286, 1698, 2243, 2539
BspQI	GCTCTTC	1 cut(s)	420
BspT104I	TTCGAA	1 cut(s)	656
BspT107I	GGYRCC	1 cut(s)	203
BspTNI	GGTCTC	1 cut(s)	442
BsrBI	CCGCTC	1 cut(s)	169
BsrDI	GCAATG	2 cut(s)	381, 2218
BsrFI	RCCGGY	4 cut(s)	256, 352, 356, 2343
BsrGI	TGTACA	1 cut(s)	1746
BsrI	ACTGG	1 cut(s)	1295
BssAI	RCCGGY	4 cut(s)	256, 352, 356, 2343
BssECI	CCNNGG	7 cut(s)	182, 1471, 1548, 1806, 2256, 2516, 2549
BssNI	GRCGYC	1 cut(s)	312
BssSI	CACGAG	1 cut(s)	498
BssT1I	CCWWGG	2 cut(s)	1548, 1806
Bst2BI	CACGAG	1 cut(s)	498
Bst2UI	CCWGG	5 cut(s)	525, 867, 1473, 2394, 2517
Bst4CI	ACNGT	9 cut(s)	835, 1001, 1237, 1286, 1346, 1603, 1636, 2065, 2539
Bst6I	CTCTTC	3 cut(s)	235, 420, 2210
BstACI	GRCGYC	1 cut(s)	312
BstAUI	TGTACA	1 cut(s)	1746
BstBAI	YACGTR	1 cut(s)	1013
BstBI	TTCGAA	1 cut(s)	656
BstC8I	GCNNGC	8 cut(s)	31, 258, 358, 1170, 1500, 1774, 2523, 2581
BstDSI	CCRYGG	2 cut(s)	2256, 2549
BstF5I	GGATG	3 cut(s)	616, 1219, 2252
BstFNI	CGCG	2 cut(s)	320, 390
BstHHI	GCGC	2 cut(s)	392, 1028
BstMAI	GTCTC	2 cut(s)	290, 442
BstMCI	CGRYCG	3 cut(s)	357, 399, 2555
BstNI	CCWGG	5 cut(s)	525, 867, 1473, 2394, 2517
BstNSI	RCATGY	2 cut(s)	1502, 1744
BstSCI	CCNGG	7 cut(s)	523, 696, 865, 1471, 1725, 2392, 2515
BstSFI	CTRYAG	1 cut(s)	2535
BstSLI	GKGCMC	1 cut(s)	112
BstUI	CGCG	2 cut(s)	320, 390
BstV1I	GCAGC	8 cut(s)	397, 626, 627, 1391, 1635, 2311, 2563, 2575
BstX2I	RGATCY	4 cut(s)	449, 478, 2248, 2531
BstXI	CCANNNNNNTGG	2 cut(s)	873, 1091
BstYI	RGATCY	4 cut(s)	449, 478, 2248, 2531
BstZI	CGGCCG	2 cut(s)	354, 2552
BsuI	GTATCC	1 cut(s)	1551
BsuRI	GGCC	7 cut(s)	356, 1168, 2111, 2285, 2444, 2521, 2554
BtgI	CCRYGG	2 cut(s)	2256, 2549
BtrI	CACGTC	1 cut(s)	1264
BtsCI	GGATG	3 cut(s)	616, 1219, 2252
BtsI	GCAGTG	1 cut(s)	1666
BtsIMutI	CAGTG	3 cut(s)	1342, 1666, 2149
BtuMI	TCGCGA	1 cut(s)	320
BveI	ACCTGC	1 cut(s)	2443
Cac8I	GCNNGC	8 cut(s)	31, 258, 358, 1170, 1500, 1774, 2523, 2581
CaiI	CAGNNNCTG	1 cut(s)	1301
CciI	TCATGA	2 cut(s)	1905, 1956
CfoI	GCGC	2 cut(s)	392, 1028
Cfr10I	RCCGGY	4 cut(s)	256, 352, 356, 2343
Cfr13I	GGNCC	5 cut(s)	65, 213, 2283, 2443, 2519
CseI	GACGC	1 cut(s)	320
Csp6I	GTAC	7 cut(s)	404, 534, 569, 1306, 1479, 1523, 1747
CspAI	ACCGGT	1 cut(s)	2343
CspCI	CAANNNNNGTGG	2 cut(s)	936, 971
CviAII	CATG	9 cut(s)	56, 1499, 1686, 1741, 1906, 1957, 2174, 2232, 2377
CviQI	GTAC	7 cut(s)	404, 534, 569, 1306, 1479, 1523, 1747
DraI	TTTAAA	1 cut(s)	2182
EaeI	YGGCCR	2 cut(s)	354, 2552
EagI	CGGCCG	2 cut(s)	354, 2552
Eam1104I	CTCTTC	3 cut(s)	235, 420, 2210
EarI	CTCTTC	3 cut(s)	235, 420, 2210
EciI	GGCGGA	1 cut(s)	471
Ecl136II	GAGCTC	1 cut(s)	1575
EclXI	CGGCCG	2 cut(s)	354, 2552
Eco130I	CCWWGG	2 cut(s)	1548, 1806
Eco147I	AGGCCT	1 cut(s)	2111
Eco24I	GRGCYC	3 cut(s)	1233, 1577, 2384
Eco31I	GGTCTC	1 cut(s)	442
Eco47I	GGWCC	2 cut(s)	65, 213
Eco52I	CGGCCG	2 cut(s)	354, 2552
Eco53kI	GAGCTC	1 cut(s)	1575
Eco57I	CTGAAG	4 cut(s)	120, 522, 1401, 2191
Eco72I	CACGTG	1 cut(s)	1013
Eco88I	CYCGRG	1 cut(s)	1570
EcoICRI	GAGCTC	1 cut(s)	1575
EcoO109I	RGGNCCY	2 cut(s)	65, 2443
EcoRI	GAATTC	1 cut(s)	1816
EcoRII	CCWGG	5 cut(s)	523, 865, 1471, 2392, 2515
EcoT14I	CCWWGG	2 cut(s)	1548, 1806
EcoT38I	GRGCYC	3 cut(s)	1233, 1577, 2384
ErhI	CCWWGG	2 cut(s)	1548, 1806
Esp3I	CGTCTC	1 cut(s)	290
FaeI	CATG	9 cut(s)	59, 1502, 1689, 1744, 1909, 1960, 2177, 2235, 2380
FalI	AAGNNNNNCTT	4 cut(s)	741, 773, 1025, 1057
FaqI	GGGAC	4 cut(s)	51, 1478, 1896, 2249
FatI	CATG	9 cut(s)	55, 1498, 1685, 1740, 1905, 1956, 2173, 2231, 2376
FauI	CCCGC	1 cut(s)	174
FauNDI	CATATG	1 cut(s)	1163
FokI	GGATG	3 cut(s)	623, 1226, 2239
FriOI	GRGCYC	3 cut(s)	1233, 1577, 2384
FspBI	CTAG	6 cut(s)	77, 453, 564, 1949, 2328, 2609
GlaI	GCGC	2 cut(s)	391, 1027
HaeIII	GGCC	7 cut(s)	356, 1168, 2111, 2285, 2444, 2521, 2554
HapII	CCGG	8 cut(s)	257, 353, 357, 371, 395, 698, 1727, 2344
HgaI	GACGC	1 cut(s)	320
HhaI	GCGC	2 cut(s)	392, 1028
Hin1I	GRCGYC	1 cut(s)	312
Hin1II	CATG	9 cut(s)	59, 1502, 1689, 1744, 1909, 1960, 2177, 2235, 2380
Hin6I	GCGC	2 cut(s)	390, 1026
HinP1I	GCGC	2 cut(s)	390, 1026
HincII	GTYRAC	1 cut(s)	1342
HindII	GTYRAC	1 cut(s)	1342
HindIII	AAGCTT	1 cut(s)	1615
HinfI	GANTC	9 cut(s)	8, 176, 193, 263, 516, 1108, 1753, 1761, 1960
HpaII	CCGG	8 cut(s)	257, 353, 357, 371, 395, 698, 1727, 2344
HphI	GGTGA	5 cut(s)	59, 823, 969, 1391, 2057
Hpy166II	GTNNAC	5 cut(s)	110, 569, 1177, 1342, 2023
Hpy8I	GTNNAC	5 cut(s)	110, 569, 1177, 1342, 2023
Hpy99I	CGWCG	2 cut(s)	314, 320
HpyAV	CCTTC	6 cut(s)	131, 277, 1083, 1285, 1873, 2379
HpyCH4III	ACNGT	9 cut(s)	835, 1001, 1237, 1286, 1346, 1603, 1636, 2065, 2539
HpyCH4IV	ACGT	4 cut(s)	273, 1012, 1263, 1536
HpyCH4V	TGCA	7 cut(s)	110, 614, 761, 853, 1502, 1508, 1901
HpySE526I	ACGT	4 cut(s)	273, 1012, 1263, 1536
Hsp92I	GRCGYC	1 cut(s)	312
Hsp92II	CATG	9 cut(s)	59, 1502, 1689, 1744, 1909, 1960, 2177, 2235, 2380
HspAI	GCGC	2 cut(s)	390, 1026
KflI	GGGWCCC	1 cut(s)	65
KroI	GCCGGC	2 cut(s)	256, 356
KroNI	GCCGGC	2 cut(s)	258, 358
LguI	GCTCTTC	1 cut(s)	420
LmnI	GCTCC	4 cut(s)	307, 397, 2147, 2518
Lsp1109I	GCAGC	8 cut(s)	397, 626, 627, 1391, 1635, 2311, 2563, 2575
LweI	GCATC	5 cut(s)	601, 1204, 1888, 2038, 2080
MaeI	CTAG	6 cut(s)	77, 453, 564, 1949, 2328, 2609
MaeII	ACGT	4 cut(s)	273, 1012, 1263, 1536
MaeIII	GTNAC	6 cut(s)	35, 772, 1532, 1736, 1891, 2275
MbiI	CCGCTC	1 cut(s)	169
MfeI	CAATTG	1 cut(s)	1503
MflI	RGATCY	4 cut(s)	449, 478, 2248, 2531
MhlI	GDGCHC	4 cut(s)	112, 1233, 1577, 2384
MlyI	GAGTC	3 cut(s)	170, 202, 510
MmeI	TCCRAC	3 cut(s)	622, 737, 1896
MroNI	GCCGGC	2 cut(s)	256, 356
MseI	TTAA	8 cut(s)	885, 1005, 1044, 1650, 1841, 1995, 2181, 2351
MspA1I	CMGCKG	4 cut(s)	617, 1136, 2324, 2525
MspI	CCGG	8 cut(s)	257, 353, 357, 371, 395, 698, 1727, 2344
MspR9I	CCNGG	7 cut(s)	525, 698, 867, 1473, 1727, 2394, 2517
MunI	CAATTG	1 cut(s)	1503
Mva1269I	GAATGC	2 cut(s)	1417, 1774
MvaI	CCWGG	5 cut(s)	525, 867, 1473, 2394, 2517
MvnI	CGCG	2 cut(s)	320, 390
NaeI	GCCGGC	2 cut(s)	258, 358
NciI	CCSGG	2 cut(s)	698, 1727
NdeI	CATATG	1 cut(s)	1163
NgoMIV	GCCGGC	2 cut(s)	256, 356
NlaIII	CATG	9 cut(s)	59, 1502, 1689, 1744, 1909, 1960, 2177, 2235, 2380
NlaIV	GGNNCC	6 cut(s)	66, 67, 205, 303, 2284, 2445
NmeAIII	GCCGAG	5 cut(s)	127, 132, 163, 217, 222
NmuCI	GTSAC	2 cut(s)	35, 2275
NruI	TCGCGA	1 cut(s)	320
NspI	RCATGY	2 cut(s)	1502, 1744
NspV	TTCGAA	1 cut(s)	656
PaeI	GCATGC	1 cut(s)	1502
PaeR7I	CTCGAG	1 cut(s)	1570
PagI	TCATGA	2 cut(s)	1905, 1956
PaqCI	CACCTGC	1 cut(s)	2443
PceI	AGGCCT	1 cut(s)	2111
PciI	ACATGT	1 cut(s)	1740
PciSI	GCTCTTC	1 cut(s)	420
PcsI	WCGNNNNNNNCGW	1 cut(s)	1533
PctI	GAATGC	2 cut(s)	1417, 1774
PdiI	GCCGGC	2 cut(s)	258, 358
PfeI	GAWTC	6 cut(s)	8, 263, 1108, 1753, 1761, 1960
PflFI	GACNNNGTC	1 cut(s)	314
PflMI	CCANNNNNTGG	2 cut(s)	61, 2528
PinAI	ACCGGT	1 cut(s)	2343
PleI	GAGTC	3 cut(s)	170, 201, 510
PmaCI	CACGTG	1 cut(s)	1013
PmlI	CACGTG	1 cut(s)	1013
PpsI	GAGTC	3 cut(s)	170, 201, 510
Ppu21I	YACGTR	1 cut(s)	1013
PpuMI	RGGWCCY	1 cut(s)	65
PscI	ACATGT	1 cut(s)	1740
PsiI	TTATAA	1 cut(s)	2358
Psp124BI	GAGCTC	1 cut(s)	1577
Psp5II	RGGWCCY	1 cut(s)	65
Psp6I	CCWGG	5 cut(s)	523, 865, 1471, 2392, 2515
PspCI	CACGTG	1 cut(s)	1013
PspGI	CCWGG	5 cut(s)	523, 865, 1471, 2392, 2515
PspN4I	GGNNCC	6 cut(s)	66, 67, 205, 303, 2284, 2445
PspPI	GGNCC	5 cut(s)	65, 213, 2283, 2443, 2519
PspPPI	RGGWCCY	1 cut(s)	65
PspXI	VCTCGAGB	1 cut(s)	1570
PstNI	CAGNNNCTG	1 cut(s)	1301
PsuI	RGATCY	4 cut(s)	449, 478, 2248, 2531
PsyI	GACNNNGTC	1 cut(s)	314
PvuII	CAGCTG	3 cut(s)	617, 2324, 2525
RruI	TCGCGA	1 cut(s)	320
RsaI	GTAC	7 cut(s)	405, 535, 570, 1307, 1480, 1524, 1748
RsaNI	GTAC	7 cut(s)	404, 534, 569, 1306, 1479, 1523, 1747
SacI	GAGCTC	1 cut(s)	1577
SapI	GCTCTTC	1 cut(s)	420
SaqAI	TTAA	8 cut(s)	885, 1005, 1044, 1650, 1841, 1995, 2181, 2351
Sau96I	GGNCC	5 cut(s)	65, 213, 2283, 2443, 2519
ScaI	AGTACT	1 cut(s)	535
SchI	GAGTC	3 cut(s)	170, 202, 510
ScrFI	CCNGG	7 cut(s)	525, 698, 867, 1473, 1727, 2394, 2517
SduI	GDGCHC	4 cut(s)	112, 1233, 1577, 2384
SfaNI	GCATC	5 cut(s)	601, 1204, 1888, 2038, 2080
SfcI	CTRYAG	1 cut(s)	2535
Sfr274I	CTCGAG	1 cut(s)	1570
SfuI	TTCGAA	1 cut(s)	656
SinI	GGWCC	2 cut(s)	65, 213
SlaI	CTCGAG	1 cut(s)	1570
SmlI	CTYRAG	3 cut(s)	916, 1570, 2226
SmoI	CTYRAG	3 cut(s)	916, 1570, 2226
SphI	GCATGC	1 cut(s)	1502
SseBI	AGGCCT	1 cut(s)	2111
SsiI	CCGC	8 cut(s)	4, 167, 207, 482, 1134, 1859, 2286, 2483
SspI	AATATT	1 cut(s)	883
SspMI	CTAG	6 cut(s)	77, 453, 564, 1949, 2328, 2609
SstI	GAGCTC	1 cut(s)	1577
StuI	AGGCCT	1 cut(s)	2111
StyD4I	CCNGG	7 cut(s)	523, 696, 865, 1471, 1725, 2392, 2515
StyI	CCWWGG	2 cut(s)	1548, 1806
TaaI	ACNGT	9 cut(s)	835, 1001, 1237, 1286, 1346, 1603, 1636, 2065, 2539
TaiI	ACGT	4 cut(s)	276, 1015, 1266, 1539
TaqI	TCGA	7 cut(s)	656, 793, 1076, 1445, 1527, 1571, 1820
TatI	WGTACW	4 cut(s)	533, 1478, 1522, 1746
TauI	GCSGC	4 cut(s)	1136, 1862, 2288, 2485
TfiI	GAWTC	6 cut(s)	8, 263, 1108, 1753, 1761, 1960
Tru1I	TTAA	8 cut(s)	885, 1005, 1044, 1650, 1841, 1995, 2181, 2351
Tru9I	TTAA	8 cut(s)	885, 1005, 1044, 1650, 1841, 1995, 2181, 2351
TscAI	CASTG	3 cut(s)	1342, 1666, 2149
TseFI	GTSAC	2 cut(s)	35, 2275
TseI	GCWGC	8 cut(s)	410, 614, 640, 1379, 1623, 2324, 2563, 2576
Tsp45I	GTSAC	2 cut(s)	35, 2275
TspDTI	ATGAA	3 cut(s)	2003, 2162, 2259
TspGWI	ACGGA	3 cut(s)	205, 1467, 2245
TspRI	CASTG	3 cut(s)	1342, 1666, 2149
Tth111I	GACNNNGTC	1 cut(s)	314
Van91I	CCANNNNNTGG	2 cut(s)	61, 2528
VneI	GTGCAC	1 cut(s)	108
VpaK11BI	GGWCC	2 cut(s)	65, 213
XapI	RAATTY	4 cut(s)	621, 1796, 1816, 1991
XbaI	TCTAGA	1 cut(s)	1948
XceI	RCATGY	2 cut(s)	1502, 1744
XcmI	CCANNNNNNNNNTGG	1 cut(s)	870
XhoI	CTCGAG	1 cut(s)	1570
XspI	CTAG	6 cut(s)	77, 453, 564, 1949, 2328, 2609
ZrmI	AGTACT	1 cut(s)	535

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.