Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001803.1

Orthogroup ID

OG0007193

Physical Location & Seq

Genomic Coordinates Reverse (-)

113896 .. 119915

Gene Structure 6020 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 894 bp

atgaaaatttcaagggtccagatttacttggtcaggctggtagccgcacagaaaatttctaccatcacagtttcttcatttccctctttacatttactccttcattcactacgccaaaggtcggagaattccttgattaccaattcgtactcacattcccgtaacttggaaagcgaagaggaccctgtgaagaagactcaagtggtggatgcccgggctagaaatatcagtcataatgttaggtgcactgagtgtgggagtcagtccattgaggattcacaagctgatatcgccattcttcttagaaagattcatgctgtgaagagtgacaaggagatctacaagaagcttgaggaggattttggggagacggtactttatgccccaaaatttgatgtgcagactgcaggcttatggctatcaccgcttgtggttgccggtgctgctgcaggtatttgggcttataagaagcacagacaaaggactaacgtccacgtcatggctttgaaccttattagaggtgttccactgaccccaaatgagaagcaaaccatgttagacctcctcacaccgccatcttcacgaggaaatataccttcatcttggtggaggtggagtggcggatctgttgtagcgttctttgaggacgacaatgaaggcttggatctacaaggggtcgaaggcgttcgatgggacaggggagtgggcctgagcttagagcttgggtgctcgcggatgatcaacaagttggaaaatacgattggagaagatgcgaagatgaaggggccattttttcactacagagttttctttttcttggcaaatcttgatctacagagtgtgaggcgcgtagttccttttcgttcatctttcatgtttgtgattatcatctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0003006 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0007275 GO:0008150 GO:0008152 GO:0009790 GO:0009791 GO:0009793 GO:0009987 GO:0010154 GO:0016020 GO:0016043 GO:0016491 GO:0017004 GO:0019866 GO:0022414 GO:0022607 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0032501 GO:0032502 GO:0034622 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043933 GO:0044085 GO:0044422 GO:0044424 GO:0044429 GO:0044444 GO:0044446 GO:0044464 GO:0048316 GO:0048608 GO:0048731 GO:0048856 GO:0055114 GO:0061458 GO:0065003 GO:0071840

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CcmH

Protein Analysis

297

Amino Acids

33.54

Weight (kDa)

9.22

Isoelectric Point (pI)

59.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
CcmH	PF03918	56 - 188	1.4e-22	Cytochrome C biogenesis protein

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007193)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G15220 AT1G15220
fragaria_vesca	FvH4_6g31840
malus_domestica	MD17G1190700.v1.1
prunus_persica	Prupe.6G357100_v2.0.a1 Prupe.6G357100_v2.0.a1 Prupe.6G357100_v2.0.a1
pyrus_communis	pycom17g19790
rosa_chinensis	RchiOBHm_Chr2g0139101 RchiOBHm_Chr2g0139151
rosa_laevigata	RLG00000019791
rosa_multiflora	Rmu_sc0001803.1_g000023 Rmu_sc0001803.1_g000031 Rmu_sc0006014.1_g000018 Rmu_sc0014249.1_g000001
rosa_roxburghii	Rroxscaffold_2G00105620
rosa_rugosa	Rorug02G0354800 Rorug02G0355100
rosa_samantha	Rh2AG404800 Rh2BG415300 Rh2CG391100 Rh2DG424600 Rh2DG425000
rosa_wichuraiana	Rw2G033070 Rw2G033090

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	465
Acc36I	ACCTGC	1 cut(s)	440
AccB7I	CCANNNNNTGG	1 cut(s)	499
AccII	CGCG	2 cut(s)	733, 849
AciI	CCGC	5 cut(s)	45, 425, 572, 621, 733
AclWI	GGATC	2 cut(s)	631, 672
AcsI	RAATTY	4 cut(s)	6, 54, 127, 389
AdeI	CACNNNGTG	1 cut(s)	252
AfaI	GTAC	2 cut(s)	149, 375
AfiI	CCNNNNNNNGG	3 cut(s)	121, 166, 499
AgsI	TTSAA	2 cut(s)	12, 508
AjiI	CACGTC	1 cut(s)	496
AjuI	GAANNNNNNNTTGG	2 cut(s)	744, 776
AluBI	AGCT	4 cut(s)	284, 349, 714, 721
AluI	AGCT	4 cut(s)	284, 349, 714, 721
Alw21I	GWGCWC	2 cut(s)	248, 731
Alw26I	GTCTC	1 cut(s)	362
Alw44I	GTGCAC	1 cut(s)	244
AlwI	GGATC	2 cut(s)	631, 672
Ama87I	CYCGRG	1 cut(s)	213
AoxI	GGCC	2 cut(s)	706, 785
ApaLI	GTGCAC	1 cut(s)	244
ApeKI	GCWGC	2 cut(s)	443, 446
ApoI	RAATTY	4 cut(s)	6, 54, 127, 389
Asp700I	GAANNNNTTC	1 cut(s)	684
AspLEI	GCGC	1 cut(s)	849
AspS9I	GGNCC	4 cut(s)	16, 181, 706, 785
AsuC2I	CCSGG	2 cut(s)	214, 215
AsuHPI	GGTGA	1 cut(s)	414
AvaI	CYCGRG	1 cut(s)	213
AvaII	GGWCC	2 cut(s)	16, 181
BaeGI	GKGCMC	1 cut(s)	248
BauI	CACGAG	1 cut(s)	582
BbsI	GAAGAC	1 cut(s)	200
Bbv12I	GWGCWC	2 cut(s)	248, 731
BbvI	GCAGC	2 cut(s)	430, 433
BccI	CCATC	3 cut(s)	71, 583, 684
BclI	TGATCA	1 cut(s)	738
BcnI	CCSGG	2 cut(s)	214, 215
BcoDI	GTCTC	1 cut(s)	362
BfaI	CTAG	1 cut(s)	219
BfmI	CTRYAG	4 cut(s)	405, 447, 799, 833
BfuAI	ACCTGC	1 cut(s)	440
BglII	AGATCT	1 cut(s)	336
BisI	GCNGC	3 cut(s)	45, 444, 447
BlsI	GCNGC	3 cut(s)	46, 445, 448
Bme1390I	CCNGG	2 cut(s)	214, 215
Bme18I	GGWCC	2 cut(s)	16, 181
BmeT110I	CYCGRG	1 cut(s)	213
BmgBI	CACGTC	1 cut(s)	496
BmgT120I	GGNCC	4 cut(s)	16, 181, 706, 785
BmiI	GGNNCC	3 cut(s)	17, 183, 786
BmrFI	CCNGG	2 cut(s)	214, 215
BmsI	GCATC	2 cut(s)	199, 760
BoxI	GACNNNNGTC	1 cut(s)	488
BpiI	GAAGAC	1 cut(s)	200
Bpu10I	CCTNAGC	1 cut(s)	710
BpuEI	CTTGAG	2 cut(s)	183, 371
BpuMI	CCSGG	2 cut(s)	214, 215
BsaBI	GATNNNNATC	1 cut(s)	887
BsaJI	CCNNGG	1 cut(s)	213
BsaXI	ACNNNNNCTCC	4 cut(s)	81, 111, 601, 631
Bsc4I	CCNNNNNNNGG	3 cut(s)	121, 166, 499
Bse118I	RCCGGY	1 cut(s)	437
Bse8I	GATNNNNATC	1 cut(s)	887
BseDI	CCNNGG	1 cut(s)	213
BseGI	GGATG	2 cut(s)	214, 741
BseJI	GATNNNNATC	1 cut(s)	887
BseLI	CCNNNNNNNGG	3 cut(s)	121, 166, 499
BseMII	CTCAG	2 cut(s)	240, 701
BseRI	GAGGAG	2 cut(s)	368, 554
BseSI	GKGCMC	1 cut(s)	248
BseXI	GCAGC	2 cut(s)	430, 433
BsgI	GTGCAG	1 cut(s)	419
Bsh1236I	CGCG	2 cut(s)	733, 849
BshFI	GGCC	2 cut(s)	708, 787
BsiHKAI	GWGCWC	2 cut(s)	248, 731
BsiHKCI	CYCGRG	1 cut(s)	213
BsiSI	CCGG	2 cut(s)	214, 438
BslFI	GGGAC	1 cut(s)	707
BslI	CCNNNNNNNGG	3 cut(s)	121, 166, 499
BsmAI	GTCTC	1 cut(s)	362
BsmBI	CGTCTC	1 cut(s)	362
BsmFI	GGGAC	1 cut(s)	707
BsnI	GGCC	2 cut(s)	708, 787
BsoBI	CYCGRG	1 cut(s)	213
Bsp1286I	GDGCHC	2 cut(s)	248, 731
Bsp143I	GATC	5 cut(s)	336, 623, 664, 738, 829
BspACI	CCGC	5 cut(s)	45, 425, 572, 621, 733
BspANI	GGCC	2 cut(s)	708, 787
BspCNI	CTCAG	2 cut(s)	241, 702
BspFNI	CGCG	2 cut(s)	733, 849
BspLI	GGNNCC	3 cut(s)	17, 183, 786
BspMAI	CTGCAG	2 cut(s)	409, 451
BspMI	ACCTGC	1 cut(s)	440
BspPI	GGATC	2 cut(s)	631, 672
BsrFI	RCCGGY	1 cut(s)	437
BssAI	RCCGGY	1 cut(s)	437
BssECI	CCNNGG	1 cut(s)	213
BssMI	GATC	5 cut(s)	336, 623, 664, 738, 829
BssSI	CACGAG	1 cut(s)	582
Bst2BI	CACGAG	1 cut(s)	582
Bst4CI	ACNGT	2 cut(s)	70, 373
Bst6I	CTCTTC	2 cut(s)	171, 317
BstC8I	GCNNGC	2 cut(s)	409, 731
BstDEI	CTNAG	4 cut(s)	249, 302, 710, 715
BstF5I	GGATG	2 cut(s)	214, 741
BstFNI	CGCG	2 cut(s)	733, 849
BstHHI	GCGC	1 cut(s)	849
BstKTI	GATC	5 cut(s)	339, 626, 667, 741, 832
BstMAI	GTCTC	1 cut(s)	362
BstMBI	GATC	5 cut(s)	336, 623, 664, 738, 829
BstMWI	GCNNNNNNNGC	3 cut(s)	290, 424, 443
BstPAI	GACNNNNGTC	1 cut(s)	488
BstSCI	CCNGG	2 cut(s)	212, 213
BstSFI	CTRYAG	4 cut(s)	405, 447, 799, 833
BstSLI	GKGCMC	1 cut(s)	248
BstUI	CGCG	2 cut(s)	733, 849
BstV1I	GCAGC	2 cut(s)	430, 433
BstV2I	GAAGAC	1 cut(s)	200
BstX2I	RGATCY	3 cut(s)	336, 623, 664
BstYI	RGATCY	3 cut(s)	336, 623, 664
BsuRI	GGCC	2 cut(s)	708, 787
BtrI	CACGTC	1 cut(s)	496
BtsCI	GGATG	2 cut(s)	214, 741
BtsIMutI	CAGTG	2 cut(s)	246, 527
BveI	ACCTGC	1 cut(s)	440
Cac8I	GCNNGC	2 cut(s)	409, 731
CfoI	GCGC	1 cut(s)	849
Cfr10I	RCCGGY	1 cut(s)	437
Cfr13I	GGNCC	4 cut(s)	16, 181, 706, 785
Cfr9I	CCCGGG	1 cut(s)	213
Csp6I	GTAC	2 cut(s)	148, 374
CviAII	CATG	4 cut(s)	314, 499, 553, 874
CviQI	GTAC	2 cut(s)	148, 374
DdeI	CTNAG	4 cut(s)	249, 302, 710, 715
DpnI	GATC	5 cut(s)	338, 625, 666, 740, 831
DpnII	GATC	5 cut(s)	336, 623, 664, 738, 829
DraIII	CACNNNGTG	1 cut(s)	252
Eam1104I	CTCTTC	2 cut(s)	171, 317
EarI	CTCTTC	2 cut(s)	171, 317
EciI	GGCGGA	1 cut(s)	636
Eco32I	GATATC	1 cut(s)	289
Eco47I	GGWCC	2 cut(s)	16, 181
Eco88I	CYCGRG	1 cut(s)	213
EcoO109I	RGGNCCY	1 cut(s)	181
EcoRI	GAATTC	1 cut(s)	127
EcoRV	GATATC	1 cut(s)	289
Esp3I	CGTCTC	1 cut(s)	362
FaeI	CATG	4 cut(s)	317, 502, 556, 877
FaiI	YATR	9 cut(s)	234, 315, 381, 415, 465, 500, 554, 593, 875
FaqI	GGGAC	1 cut(s)	707
FatI	CATG	4 cut(s)	313, 498, 552, 873
FbaI	TGATCA	1 cut(s)	738
Fnu4HI	GCNGC	3 cut(s)	45, 444, 447
FokI	GGATG	2 cut(s)	221, 748
Fsp4HI	GCNGC	3 cut(s)	45, 444, 447
FspBI	CTAG	1 cut(s)	219
GlaI	GCGC	1 cut(s)	848
GluI	GCNGC	3 cut(s)	45, 444, 447
HaeIII	GGCC	2 cut(s)	708, 787
HapII	CCGG	2 cut(s)	214, 438
HhaI	GCGC	1 cut(s)	849
Hin1II	CATG	4 cut(s)	317, 502, 556, 877
Hin6I	GCGC	1 cut(s)	847
HinP1I	GCGC	1 cut(s)	847
HindIII	AAGCTT	1 cut(s)	347
HinfI	GANTC	4 cut(s)	196, 259, 275, 310
HpaII	CCGG	2 cut(s)	214, 438
HphI	GGTGA	1 cut(s)	414
Hpy166II	GTNNAC	2 cut(s)	246, 493
Hpy188I	TCNGA	1 cut(s)	124
Hpy188III	TCNNGA	3 cut(s)	19, 582, 827
Hpy8I	GTNNAC	2 cut(s)	246, 493
HpyAV	CCTTC	5 cut(s)	110, 606, 650, 674, 775
HpyCH4III	ACNGT	2 cut(s)	70, 373
HpyCH4IV	ACGT	2 cut(s)	489, 495
HpyCH4V	TGCA	4 cut(s)	246, 400, 407, 449
HpyF10VI	GCNNNNNNNGC	3 cut(s)	290, 424, 443
HpyF3I	CTNAG	4 cut(s)	249, 302, 710, 715
HpySE526I	ACGT	2 cut(s)	489, 495
Hsp92II	CATG	4 cut(s)	317, 502, 556, 877
HspAI	GCGC	1 cut(s)	847
Ksp22I	TGATCA	1 cut(s)	738
Kzo9I	GATC	5 cut(s)	336, 623, 664, 738, 829
Lsp1109I	GCAGC	2 cut(s)	430, 433
LweI	GCATC	2 cut(s)	199, 760
MaeI	CTAG	1 cut(s)	219
MaeII	ACGT	2 cut(s)	489, 495
MaeIII	GTNAC	2 cut(s)	161, 326
MalI	GATC	5 cut(s)	338, 625, 666, 740, 831
MboI	GATC	5 cut(s)	336, 623, 664, 738, 829
MboII	GAAGA	9 cut(s)	66, 188, 202, 205, 290, 334, 570, 779, 787
MflI	RGATCY	3 cut(s)	336, 623, 664
MhlI	GDGCHC	2 cut(s)	248, 731
MluCI	AATT	5 cut(s)	6, 54, 127, 142, 389
MlyI	GAGTC	2 cut(s)	190, 268
MmeI	TCCRAC	2 cut(s)	102, 729
MroXI	GAANNNNTTC	1 cut(s)	684
MslI	CAYNNNNRTG	2 cut(s)	604, 878
MspI	CCGG	2 cut(s)	214, 438
MspR9I	CCNGG	2 cut(s)	214, 215
MvnI	CGCG	2 cut(s)	733, 849
MwoI	GCNNNNNNNGC	3 cut(s)	290, 424, 443
NciI	CCSGG	2 cut(s)	214, 215
NdeII	GATC	5 cut(s)	336, 623, 664, 738, 829
NlaIII	CATG	4 cut(s)	317, 502, 556, 877
NlaIV	GGNNCC	3 cut(s)	17, 183, 786
NmuCI	GTSAC	1 cut(s)	326
PdmI	GAANNNNTTC	1 cut(s)	684
PfeI	GAWTC	2 cut(s)	275, 310
PflMI	CCANNNNNTGG	1 cut(s)	499
PkrI	GCNGC	3 cut(s)	46, 445, 448
PleI	GAGTC	2 cut(s)	190, 267
PpsI	GAGTC	2 cut(s)	190, 267
PpuMI	RGGWCCY	1 cut(s)	181
PshAI	GACNNNNGTC	1 cut(s)	488
PsiI	TTATAA	1 cut(s)	465
Psp5II	RGGWCCY	1 cut(s)	181
PspN4I	GGNNCC	3 cut(s)	17, 183, 786
PspPI	GGNCC	4 cut(s)	16, 181, 706, 785
PspPPI	RGGWCCY	1 cut(s)	181
PstI	CTGCAG	2 cut(s)	409, 451
PsuI	RGATCY	3 cut(s)	336, 623, 664
RsaI	GTAC	2 cut(s)	149, 375
RsaNI	GTAC	2 cut(s)	148, 374
RseI	CAYNNNNRTG	2 cut(s)	604, 878
SatI	GCNGC	3 cut(s)	45, 444, 447
Sau3AI	GATC	5 cut(s)	336, 623, 664, 738, 829
Sau96I	GGNCC	4 cut(s)	16, 181, 706, 785
SchI	GAGTC	2 cut(s)	190, 268
ScrFI	CCNGG	2 cut(s)	214, 215
SduI	GDGCHC	2 cut(s)	248, 731
SfaNI	GCATC	2 cut(s)	199, 760
SfcI	CTRYAG	4 cut(s)	405, 447, 799, 833
SinI	GGWCC	2 cut(s)	16, 181
SmaI	CCCGGG	1 cut(s)	215
SmiMI	CAYNNNNRTG	2 cut(s)	604, 878
SmlI	CTYRAG	2 cut(s)	198, 350
SmoI	CTYRAG	2 cut(s)	198, 350
SrfI	GCCCGGGC	1 cut(s)	215
Sse9I	AATT	5 cut(s)	6, 54, 127, 142, 389
SsiI	CCGC	5 cut(s)	45, 425, 572, 621, 733
SspMI	CTAG	1 cut(s)	219
StyD4I	CCNGG	2 cut(s)	212, 213
TaaI	ACNGT	2 cut(s)	70, 373
TaiI	ACGT	2 cut(s)	492, 498
TaqI	TCGA	2 cut(s)	678, 688
TasI	AATT	5 cut(s)	6, 54, 127, 142, 389
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	2 cut(s)	275, 310
TscAI	CASTG	2 cut(s)	253, 534
TseFI	GTSAC	1 cut(s)	326
TseI	GCWGC	2 cut(s)	443, 446
Tsp45I	GTSAC	1 cut(s)	326
TspDTI	ATGAA	9 cut(s)	17, 66, 92, 302, 588, 669, 794, 855, 862
TspMI	CCCGGG	1 cut(s)	213
TspRI	CASTG	2 cut(s)	253, 534
Van91I	CCANNNNNTGG	1 cut(s)	499
VneI	GTGCAC	1 cut(s)	244
VpaK11BI	GGWCC	2 cut(s)	16, 181
XapI	RAATTY	4 cut(s)	6, 54, 127, 389
XmaI	CCCGGG	1 cut(s)	213
XmnI	GAANNNNTTC	1 cut(s)	684
XspI	CTAG	1 cut(s)	219

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.