Rmu_sc0001849.1_g000083

DNA photolyase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001849.1
OG0005426
Physical Location & Seq
Reverse (-)
317168 .. 322497
5330 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1428 bp
ctggacagtaatggcttcactcttcactctccctcgctttccttctccccaagaacccacctttacttgccgaaatggtgccgtttcagagctcaaatttcaattaacagcggagcgaaaaccggcgccgccgtcgtttggctaaagcacgacctccgaatcgaatatcatctagctcttctcgccgccgctgatcattttggagcaattcctctctatgtcttcgaccaccgtattctctcccgttttgaagacgaaatgctagaaatggttgcggttgctttagaagatttgagaaactcgttgagagataaaggtaccaacttgatggtgaggtttgggaatgtagagaatgtgatacaagagattgtagaaaaggttgtgagcactatgtatgctgaggaggaggtggagtatggtcgtttgagagacatggttggttttgtcaaggacagattgggaacaatgccttctgcccctgagtttgtgctgtggcgaacaccgttttatgatgtgaagagcttgaagggcattcctgattcgtacaatgactttaataaacttcgactgccaataaccatgccgcttccgccagctacattttccggtcctatgcccacatttaatgatttgaaggagtttgtaaatttgagcaatgcgaacttggaaggtgcatttactacatgcaacacatcttttaaaggatcaactccacttccaaagaggagaactccaaagtttccagaatacaccaaggactggaaatatcgcataagcaacgacctcttaggtgggccccgcggcatgactaatccctcctacgacatacatccggtagtccgacaccccgagctacctcgctatggtggaggtcggccggaccccgcaccctctactccctcacctcccaagttccactcttctccgggactcatgagtaggcgagtatgtgcaggaccctgcaccctcatagctcatcaccgcactcatgtcatttctacaaccaaggtactactgaagatgtcatttctacaaccaaggtccactttcagtagtacccgaccgggactcgttgagaagatccagctcttggtcctcttccaacatccccatctctccggcaacactgatgcagataaattttctggcgactcttcagcacccactggtcccgtccaagtttcaatcgattgggccaacctccatcagggaacaacttacaaacttcccggccgagtggcgcactcggatcctcttctcgattctaaactcataagtggcaacttagatccgggacctgaaagtccgacgattccaaaagccagatgcataaccggttaccacctccatcaccggagactcatctctcccacgcctcccagcgcaacatctctctccggctctcggtccttcacctcatcccggtag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Abhydrolase_1 Abhydrolase_6 DNA_photolyase

Protein Analysis

475

Amino Acids

52.87

Weight (kDa)

9.41

Isoelectric Point (pI)

47.43

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DNA_photolyase PF00875 44 - 138 5.5e-14 DNA photolyase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 1302
Acc65I GGTACC 1 cut(s) 317
AccB1I GGYRCC 3 cut(s) 78, 125, 317
AccB7I CCANNNNNTGG 2 cut(s) 759, 1090
AccII CGCG 1 cut(s) 801
AclWI GGATC 5 cut(s) 712, 1075, 1244, 1257, 1283
AcoI YGGCCR 2 cut(s) 875, 1231
AcsI RAATTY 3 cut(s) 96, 646, 1139
AcuI CTGAAG 2 cut(s) 1037, 1140
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 4 cut(s) 319, 545, 1011, 1057
AfiI CCNNNNNNNGG 7 cut(s) 138, 759, 863, 1090, 1207, 1404, 1422
AgeI ACCGGT 1 cut(s) 1334
AgsI TTSAA 5 cut(s) 102, 251, 526, 634, 1185
AluBI AGCT 7 cut(s) 92, 176, 522, 596, 853, 974, 1087
AluI AGCT 7 cut(s) 92, 176, 522, 596, 853, 974, 1087
Alw21I GWGCWC 2 cut(s) 94, 389
Alw26I GTCTC 2 cut(s) 423, 1351
AlwI GGATC 5 cut(s) 712, 1075, 1244, 1257, 1283
Ama87I CYCGRG 1 cut(s) 848
AoxI GGCC 4 cut(s) 794, 875, 1194, 1231
ApaI GGGCCC 1 cut(s) 798
ApoI RAATTY 3 cut(s) 96, 646, 1139
AsiGI ACCGGT 1 cut(s) 1334
Asp718I GGTACC 1 cut(s) 317
AspLEI GCGC 3 cut(s) 128, 1243, 1385
AsuC2I CCSGG 5 cut(s) 927, 1065, 1230, 1293, 1423
AsuHPI GGTGA 5 cut(s) 343, 894, 971, 1343, 1405
AvaI CYCGRG 1 cut(s) 848
AvaII GGWCC 8 cut(s) 608, 880, 956, 1041, 1093, 1169, 1295, 1407
BaeGI GKGCMC 1 cut(s) 798
BamHI GGATCC 1 cut(s) 1249
BanI GGYRCC 3 cut(s) 78, 125, 317
BanII GRGCYC 2 cut(s) 94, 798
BbsI GAAGAC 2 cut(s) 214, 258
Bbv12I GWGCWC 2 cut(s) 94, 389
BbvCI CCTCAGC 1 cut(s) 399
BccI CCATC 4 cut(s) 322, 1119, 1212, 1356
BceAI ACGGC 2 cut(s) 66, 116
BclI TGATCA 1 cut(s) 193
BcnI CCSGG 5 cut(s) 927, 1065, 1230, 1293, 1423
BcoDI GTCTC 2 cut(s) 423, 1351
BfaI CTAG 2 cut(s) 173, 263
BfoI RGCGCY 1 cut(s) 129
BisI GCNGC 5 cut(s) 129, 186, 189, 584, 802
BlsI GCNGC 5 cut(s) 130, 187, 190, 585, 803
Bme1390I CCNGG 5 cut(s) 927, 1065, 1230, 1293, 1423
Bme18I GGWCC 8 cut(s) 608, 880, 956, 1041, 1093, 1169, 1295, 1407
BmeT110I CYCGRG 1 cut(s) 848
BmrFI CCNGG 5 cut(s) 927, 1065, 1230, 1293, 1423
BmsI GCATC 2 cut(s) 1120, 1316
BpiI GAAGAC 2 cut(s) 214, 258
BplI GAGNNNNNCTC 2 cut(s) 715, 747
Bpu10I CCTNAGC 1 cut(s) 399
BpuMI CCSGG 5 cut(s) 927, 1065, 1230, 1293, 1423
Bsa29I ATCGAT 1 cut(s) 1188
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 4 cut(s) 753, 799, 1005, 1037
BsaWI WCCGGW 4 cut(s) 605, 832, 1334, 1353
BsaXI ACNNNNNCTCC 2 cut(s) 398, 428
Bsc4I CCNNNNNNNGG 7 cut(s) 138, 759, 863, 1090, 1207, 1404, 1422
Bse118I RCCGGY 2 cut(s) 122, 1334
Bse1I ACTGG 2 cut(s) 764, 1171
Bse3DI GCAATG 1 cut(s) 661
BseCI ATCGAT 1 cut(s) 1188
BseDI CCNNGG 4 cut(s) 753, 799, 1005, 1037
BseGI GGATG 3 cut(s) 829, 1105, 1418
BseLI CCNNNNNNNGG 7 cut(s) 138, 759, 863, 1090, 1207, 1404, 1422
BseMI GCAATG 1 cut(s) 661
BseMII CTCAG 2 cut(s) 390, 471
BseNI ACTGG 2 cut(s) 764, 1171
BseRI GAGGAG 3 cut(s) 416, 419, 739
BseSI GKGCMC 1 cut(s) 798
BseX3I CGGCCG 2 cut(s) 875, 1231
BseYI CCCAGC 1 cut(s) 1379
BsgI GTGCAG 2 cut(s) 946, 972
Bsh1236I CGCG 1 cut(s) 801
Bsh1285I CGRYCG 3 cut(s) 878, 1064, 1234
BshFI GGCC 4 cut(s) 796, 877, 1196, 1233
BshNI GGYRCC 3 cut(s) 78, 125, 317
BshTI ACCGGT 1 cut(s) 1334
BshVI ATCGAT 1 cut(s) 1188
BsiEI CGRYCG 3 cut(s) 878, 1064, 1234
BsiHKAI GWGCWC 2 cut(s) 94, 389
BsiHKCI CYCGRG 1 cut(s) 848
BslFI GGGAC 4 cut(s) 942, 1080, 1155, 1308
BslI CCNNNNNNNGG 7 cut(s) 138, 759, 863, 1090, 1207, 1404, 1422
BsmAI GTCTC 2 cut(s) 423, 1351
BsmFI GGGAC 4 cut(s) 942, 1080, 1155, 1308
BsmI GAATGC 1 cut(s) 531
BsnI GGCC 4 cut(s) 796, 877, 1196, 1233
BsoBI CYCGRG 1 cut(s) 848
Bsp120I GGGCCC 1 cut(s) 794
Bsp1286I GDGCHC 3 cut(s) 94, 389, 798
Bsp143I GATC 5 cut(s) 193, 704, 1080, 1249, 1288
BspANI GGCC 4 cut(s) 796, 877, 1196, 1233
BspCNI CTCAG 2 cut(s) 391, 472
BspDI ATCGAT 1 cut(s) 1188
BspFNI CGCG 1 cut(s) 801
BspHI TCATGA 1 cut(s) 933
BspPI GGATC 5 cut(s) 712, 1075, 1244, 1257, 1283
BspQI GCTCTTC 2 cut(s) 183, 512
BspT107I GGYRCC 3 cut(s) 78, 125, 317
BsrDI GCAATG 1 cut(s) 661
BsrFI RCCGGY 2 cut(s) 122, 1334
BsrI ACTGG 2 cut(s) 764, 1171
BssAI RCCGGY 2 cut(s) 122, 1334
BssECI CCNNGG 4 cut(s) 753, 799, 1005, 1037
BssMI GATC 5 cut(s) 193, 704, 1080, 1249, 1288
BssNI GRCGYC 1 cut(s) 126
BssT1I CCWWGG 3 cut(s) 753, 1005, 1037
Bst4CI ACNGT 3 cut(s) 8, 233, 504
Bst6I CTCTTC 7 cut(s) 27, 183, 512, 925, 1103, 1159, 1260
BstACI GRCGYC 1 cut(s) 126
BstC8I GCNNGC 1 cut(s) 594
BstDEI CTNAG 4 cut(s) 399, 480, 787, 1285
BstDSI CCRYGG 1 cut(s) 799
BstEII GGTNACC 1 cut(s) 1337
BstENI CCTNNNNNAGG 1 cut(s) 1205
BstF5I GGATG 3 cut(s) 829, 1105, 1418
BstFNI CGCG 1 cut(s) 801
BstH2I RGCGCY 1 cut(s) 129
BstHHI GCGC 3 cut(s) 128, 1243, 1385
BstKTI GATC 5 cut(s) 196, 707, 1083, 1252, 1291
BstMAI GTCTC 2 cut(s) 423, 1351
BstMBI GATC 5 cut(s) 193, 704, 1080, 1249, 1288
BstMCI CGRYCG 3 cut(s) 878, 1064, 1234
BstMWI GCNNNNNNNGC 3 cut(s) 182, 528, 589
BstNSI RCATGY 1 cut(s) 687
BstPI GGTNACC 1 cut(s) 1337
BstSCI CCNGG 5 cut(s) 925, 1063, 1228, 1291, 1421
BstSLI GKGCMC 1 cut(s) 798
BstUI CGCG 1 cut(s) 801
BstV2I GAAGAC 2 cut(s) 214, 258
BstX2I RGATCY 3 cut(s) 1080, 1249, 1288
BstXI CCANNNNNNTGG 1 cut(s) 328
BstYI RGATCY 3 cut(s) 1080, 1249, 1288
BstZI CGGCCG 2 cut(s) 875, 1231
Bsu15I ATCGAT 1 cut(s) 1188
BsuRI GGCC 4 cut(s) 796, 877, 1196, 1233
BsuTUI ATCGAT 1 cut(s) 1188
BtgI CCRYGG 1 cut(s) 799
BtsCI GGATG 3 cut(s) 829, 1105, 1418
BtsIMutI CAGTG 2 cut(s) 1125, 1164
Cac8I GCNNGC 1 cut(s) 594
CciI TCATGA 1 cut(s) 933
CfoI GCGC 3 cut(s) 128, 1243, 1385
Cfr10I RCCGGY 2 cut(s) 122, 1334
Cfr42I CCGCGG 1 cut(s) 802
ClaI ATCGAT 1 cut(s) 1188
Csp6I GTAC 4 cut(s) 318, 544, 1010, 1056
CspAI ACCGGT 1 cut(s) 1334
CviAII CATG 6 cut(s) 433, 580, 684, 805, 934, 989
CviQI GTAC 4 cut(s) 318, 544, 1010, 1056
DdeI CTNAG 4 cut(s) 399, 480, 787, 1285
DinI GGCGCC 1 cut(s) 127
DpnI GATC 5 cut(s) 195, 706, 1082, 1251, 1290
DpnII GATC 5 cut(s) 193, 704, 1080, 1249, 1288
DraI TTTAAA 1 cut(s) 700
DrdI GACNNNNNNGTC 1 cut(s) 1302
DseDI GACNNNNNNGTC 1 cut(s) 1302
EaeI YGGCCR 2 cut(s) 875, 1231
EagI CGGCCG 2 cut(s) 875, 1231
Eam1104I CTCTTC 7 cut(s) 27, 183, 512, 925, 1103, 1159, 1260
EarI CTCTTC 7 cut(s) 27, 183, 512, 925, 1103, 1159, 1260
EciI GGCGGA 1 cut(s) 579
Ecl136II GAGCTC 1 cut(s) 92
EclXI CGGCCG 2 cut(s) 875, 1231
Eco130I CCWWGG 3 cut(s) 753, 1005, 1037
Eco24I GRGCYC 2 cut(s) 94, 798
Eco47I GGWCC 8 cut(s) 608, 880, 956, 1041, 1093, 1169, 1295, 1407
Eco52I CGGCCG 2 cut(s) 875, 1231
Eco53kI GAGCTC 1 cut(s) 92
Eco57I CTGAAG 2 cut(s) 1037, 1140
Eco88I CYCGRG 1 cut(s) 848
Eco91I GGTNACC 1 cut(s) 1337
EcoICRI GAGCTC 1 cut(s) 92
EcoNI CCTNNNNNAGG 1 cut(s) 1205
EcoO109I RGGNCCY 3 cut(s) 795, 956, 1295
EcoO65I GGTNACC 1 cut(s) 1337
EcoT14I CCWWGG 3 cut(s) 753, 1005, 1037
EcoT22I ATGCAT 1 cut(s) 1331
EcoT38I GRGCYC 2 cut(s) 94, 798
EgeI GGCGCC 1 cut(s) 127
EheI GGCGCC 1 cut(s) 127
ErhI CCWWGG 3 cut(s) 753, 1005, 1037
FaeI CATG 6 cut(s) 436, 583, 687, 808, 937, 992
FalI AAGNNNNNCTT 2 cut(s) 1030, 1062
FaqI GGGAC 4 cut(s) 942, 1080, 1155, 1308
FatI CATG 6 cut(s) 432, 579, 683, 804, 933, 988
FauI CCCGC 2 cut(s) 806, 892
FbaI TGATCA 1 cut(s) 193
Fnu4HI GCNGC 5 cut(s) 129, 186, 189, 584, 802
FokI GGATG 3 cut(s) 816, 1092, 1405
FriOI GRGCYC 2 cut(s) 94, 798
Fsp4HI GCNGC 5 cut(s) 129, 186, 189, 584, 802
FspBI CTAG 2 cut(s) 173, 263
GlaI GCGC 3 cut(s) 127, 1242, 1384
GluI GCNGC 5 cut(s) 129, 186, 189, 584, 802
GsaI CCCAGC 1 cut(s) 1383
HaeII RGCGCY 1 cut(s) 129
HaeIII GGCC 4 cut(s) 796, 877, 1196, 1233
HhaI GCGC 3 cut(s) 128, 1243, 1385
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 6 cut(s) 436, 583, 687, 808, 937, 992
Hin6I GCGC 3 cut(s) 126, 1241, 1383
HinP1I GCGC 3 cut(s) 126, 1241, 1383
HinfI GANTC 8 cut(s) 159, 539, 930, 1068, 1151, 1262, 1312, 1359
HphI GGTGA 5 cut(s) 343, 894, 971, 1343, 1405
Hpy166II GTNNAC 1 cut(s) 1044
Hpy188I TCNGA 5 cut(s) 89, 158, 842, 1249, 1308
Hpy188III TCNNGA 4 cut(s) 536, 743, 934, 1259
Hpy8I GTNNAC 1 cut(s) 1044
Hpy99I CGWCG 2 cut(s) 137, 1312
HpyAV CCTTC 6 cut(s) 52, 480, 520, 628, 662, 1420
HpyCH4III ACNGT 3 cut(s) 8, 233, 504
HpyCH4V TGCA 6 cut(s) 674, 687, 953, 963, 1133, 1329
HpyF10VI GCNNNNNNNGC 3 cut(s) 182, 528, 589
HpyF3I CTNAG 4 cut(s) 399, 480, 787, 1285
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 6 cut(s) 436, 583, 687, 808, 937, 992
HspAI GCGC 3 cut(s) 126, 1241, 1383
KasI GGCGCC 1 cut(s) 125
KpnI GGTACC 1 cut(s) 321
Ksp22I TGATCA 1 cut(s) 193
KspI CCGCGG 1 cut(s) 802
Kzo9I GATC 5 cut(s) 193, 704, 1080, 1249, 1288
LguI GCTCTTC 2 cut(s) 183, 512
LmnI GCTCC 2 cut(s) 113, 203
LweI GCATC 2 cut(s) 1120, 1316
MaeI CTAG 2 cut(s) 173, 263
MaeIII GTNAC 1 cut(s) 1337
MalI GATC 5 cut(s) 195, 706, 1082, 1251, 1290
MboI GATC 5 cut(s) 193, 704, 1080, 1249, 1288
MflI RGATCY 3 cut(s) 1080, 1249, 1288
MhlI GDGCHC 3 cut(s) 94, 389, 798
MluCI AATT 5 cut(s) 96, 102, 207, 646, 1139
Mly113I GGCGCC 1 cut(s) 126
MlyI GAGTC 4 cut(s) 924, 1062, 1145, 1353
MmeI TCCRAC 3 cut(s) 865, 1126, 1331
Mph1103I ATGCAT 1 cut(s) 1331
MseI TTAA 4 cut(s) 105, 555, 624, 699
MspA1I CMGCKG 3 cut(s) 111, 191, 801
MspR9I CCNGG 5 cut(s) 927, 1065, 1230, 1293, 1423
Mva1269I GAATGC 1 cut(s) 531
MvnI CGCG 1 cut(s) 801
MwoI GCNNNNNNNGC 3 cut(s) 182, 528, 589
NarI GGCGCC 1 cut(s) 126
NciI CCSGG 5 cut(s) 927, 1065, 1230, 1293, 1423
NdeII GATC 5 cut(s) 193, 704, 1080, 1249, 1288
NlaIII CATG 6 cut(s) 436, 583, 687, 808, 937, 992
NmeAIII GCCGAG 1 cut(s) 1259
NsiI ATGCAT 1 cut(s) 1331
NspI RCATGY 1 cut(s) 687
PagI TCATGA 1 cut(s) 933
PciSI GCTCTTC 2 cut(s) 183, 512
PctI GAATGC 1 cut(s) 531
PfeI GAWTC 4 cut(s) 159, 539, 1262, 1312
PflMI CCANNNNNTGG 2 cut(s) 759, 1090
PfoI TCCNGGA 2 cut(s) 925, 1291
PinAI ACCGGT 1 cut(s) 1334
PkrI GCNGC 5 cut(s) 130, 187, 190, 585, 803
PleI GAGTC 4 cut(s) 924, 1062, 1145, 1353
PluTI GGCGCC 1 cut(s) 129
PpsI GAGTC 4 cut(s) 924, 1062, 1145, 1353
PpuMI RGGWCCY 2 cut(s) 956, 1295
Psp124BI GAGCTC 1 cut(s) 94
Psp5II RGGWCCY 2 cut(s) 956, 1295
PspEI GGTNACC 1 cut(s) 1337
PspFI CCCAGC 1 cut(s) 1379
PspOMI GGGCCC 1 cut(s) 794
PspPPI RGGWCCY 2 cut(s) 956, 1295
PsuI RGATCY 3 cut(s) 1080, 1249, 1288
RsaI GTAC 4 cut(s) 319, 545, 1011, 1057
RsaNI GTAC 4 cut(s) 318, 544, 1010, 1056
SacI GAGCTC 1 cut(s) 94
SacII CCGCGG 1 cut(s) 802
SapI GCTCTTC 2 cut(s) 183, 512
SaqAI TTAA 4 cut(s) 105, 555, 624, 699
SatI GCNGC 5 cut(s) 129, 186, 189, 584, 802
Sau3AI GATC 5 cut(s) 193, 704, 1080, 1249, 1288
SchI GAGTC 4 cut(s) 924, 1062, 1145, 1353
ScrFI CCNGG 5 cut(s) 927, 1065, 1230, 1293, 1423
SduI GDGCHC 3 cut(s) 94, 389, 798
SfaNI GCATC 2 cut(s) 1120, 1316
SfoI GGCGCC 1 cut(s) 127
Sfr303I CCGCGG 1 cut(s) 802
SgrBI CCGCGG 1 cut(s) 802
SinI GGWCC 8 cut(s) 608, 880, 956, 1041, 1093, 1169, 1295, 1407
Sse9I AATT 5 cut(s) 96, 102, 207, 646, 1139
SspDI GGCGCC 1 cut(s) 125
SspMI CTAG 2 cut(s) 173, 263
SstI GAGCTC 1 cut(s) 94
StyD4I CCNGG 5 cut(s) 925, 1063, 1228, 1291, 1421
StyI CCWWGG 3 cut(s) 753, 1005, 1037
TaaI ACNGT 3 cut(s) 8, 233, 504
TaqI TCGA 5 cut(s) 162, 225, 565, 1188, 1260
TaqII GACCGA 1 cut(s) 1395
TasI AATT 5 cut(s) 96, 102, 207, 646, 1139
TauI GCSGC 5 cut(s) 131, 188, 191, 586, 804
TfiI GAWTC 4 cut(s) 159, 539, 1262, 1312
Tru1I TTAA 4 cut(s) 105, 555, 624, 699
Tru9I TTAA 4 cut(s) 105, 555, 624, 699
TscAI CASTG 2 cut(s) 1132, 1171
TspRI CASTG 2 cut(s) 1132, 1171
Van91I CCANNNNNTGG 2 cut(s) 759, 1090
VpaK11BI GGWCC 8 cut(s) 608, 880, 956, 1041, 1093, 1169, 1295, 1407
XagI CCTNNNNNAGG 1 cut(s) 1205
XapI RAATTY 3 cut(s) 96, 646, 1139
XceI RCATGY 1 cut(s) 687
XspI CTAG 2 cut(s) 173, 263
Zsp2I ATGCAT 1 cut(s) 1331
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.