Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001850.1

Orthogroup ID

OG0006471

Physical Location & Seq

Genomic Coordinates Forward (+)

113082 .. 115324

Gene Structure 2243 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 450 bp

atggcctctctgaccaccaccaacaccagcgtcggcctctccaaaactttcatcaaactgaaggagcaagacaaggttgcattaatcccttacactactgccggtgatcctgatctatcaatcaccgcagaagcattgaaggtcctggattcttgtggatcggacataattgaattaggcatgccatactctgatccattagcagctgggccagctgcagccactcgtgccttggcaagaggaactaatttgaattcaatcctggaaatagaaactggggccttatgtgcaatgaaggaagttgatctcattcctcatgatcctaaatctgcagaaagtatcaagcaatcggaaaatgcttcagttacatggcatttcttcaatgttgctggttgcctcgcggaactaaatttgataagtgattcatctgtaacgagactggtcacctga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000162 GO:0003674 GO:0003824 GO:0004834 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006082 GO:0006520 GO:0006568 GO:0006576 GO:0006586 GO:0006725 GO:0006807 GO:0006950 GO:0006952 GO:0008150 GO:0008152 GO:0008652 GO:0009058 GO:0009072 GO:0009073 GO:0009308 GO:0009309 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009605 GO:0009606 GO:0009607 GO:0009617 GO:0009628 GO:0009629 GO:0009630 GO:0009719 GO:0009725 GO:0009735 GO:0009987 GO:0010033 GO:0016043 GO:0016053 GO:0016829 GO:0016835 GO:0016836 GO:0018130 GO:0019438 GO:0019752 GO:0033036 GO:0033037 GO:0033554 GO:0034641 GO:0042221 GO:0042401 GO:0042430 GO:0042435 GO:0042545 GO:0042742 GO:0043207 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044106 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0045229 GO:0046219 GO:0046394 GO:0046483 GO:0050896 GO:0051179 GO:0051641 GO:0051704 GO:0051707 GO:0051716 GO:0052386 GO:0052482 GO:0052542 GO:0052543 GO:0052544 GO:0052545 GO:0070727 GO:0071554 GO:0071555 GO:0071704 GO:0071840 GO:0098542 GO:1901360 GO:1901362 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901607

KEGG Pathways

Metabolic & Signaling

ko00260 ko00400 ko00402 ko01100 ko01110 ko01130 ko01230 map00260 map00400 map00402 map01100 map01110 map01130 map01230

Pfam Domains

Protein Families

Trp_syntA

Protein Analysis

149

Amino Acids

15.68

Weight (kDa)

4.68

Isoelectric Point (pI)

27.09

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Trp_syntA	PF00290	17 - 90	3.1e-22	Tryptophan synthase alpha chain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006471)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G54640
fragaria_vesca	FvH4_2g22570
malus_domestica	MD05G1206300.v1.1 MD10G1193300.v1.1
prunus_persica	Prupe.8G232700_v2.0.a1
pyrus_communis	pycom05g19230 pycom10g16710
rosa_chinensis	RchiOBHm_Chr3g0488871 RchiOBHm_Chr6g0284041 RchiOBHm_Chr6g0289611
rosa_laevigata	RLG00000012288 RLG00000026432
rosa_multiflora	Rmu_co8332575.1_g000001 Rmu_sc0000607.1_g000042 Rmu_sc0001527.1_g000067 Rmu_sc0001850.1_g000026 Rmu_sc0005376.1_g000002
rosa_roxburghii	Rroxscaffold_1G00026080 Rroxscaffold_7G00177810
rosa_rugosa	Rorug06G0205100
rosa_samantha	Rh5AG506400 Rh6BG323300 Rh6CG329700 Rh6DG267800 Rh6DG315100
rosa_wichuraiana	Rw6G027310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	401
AciI	CCGC	2 cut(s)	126, 401
AclWI	GGATC	4 cut(s)	101, 166, 188, 314
AcsI	RAATTY	2 cut(s)	253, 409
AcuI	CTGAAG	2 cut(s)	80, 345
AgsI	TTSAA	5 cut(s)	139, 173, 253, 258, 382
AjnI	CCWGG	2 cut(s)	144, 261
AluBI	AGCT	2 cut(s)	206, 215
AluI	AGCT	2 cut(s)	206, 215
Alw26I	GTCTC	1 cut(s)	430
AlwI	GGATC	4 cut(s)	101, 166, 188, 314
AoxI	GGCC	4 cut(s)	3, 34, 209, 279
ApeKI	GCWGC	3 cut(s)	203, 215, 218
ApoI	RAATTY	2 cut(s)	253, 409
AseI	ATTAAT	1 cut(s)	83
AspS9I	GGNCC	3 cut(s)	142, 209, 279
AsuHPI	GGTGA	3 cut(s)	115, 116, 436
AvaII	GGWCC	1 cut(s)	142
BauI	CACGAG	1 cut(s)	225
BbvI	GCAGC	3 cut(s)	202, 215, 230
BciT130I	CCWGG	2 cut(s)	146, 263
BcoDI	GTCTC	1 cut(s)	430
BfmI	CTRYAG	2 cut(s)	216, 330
BisI	GCNGC	3 cut(s)	204, 216, 219
BlsI	GCNGC	3 cut(s)	205, 217, 220
Bme1390I	CCNGG	2 cut(s)	146, 263
Bme18I	GGWCC	1 cut(s)	142
BmgT120I	GGNCC	3 cut(s)	142, 209, 279
BmiI	GGNNCC	1 cut(s)	280
BmrFI	CCNGG	2 cut(s)	146, 263
BmrI	ACTGGG	1 cut(s)	285
BmuI	ACTGGG	1 cut(s)	285
BsaBI	GATNNNNATC	1 cut(s)	111
BsaJI	CCNNGG	1 cut(s)	231
Bse118I	RCCGGY	1 cut(s)	101
Bse1I	ACTGG	2 cut(s)	280, 444
Bse3DI	GCAATG	1 cut(s)	297
Bse8I	GATNNNNATC	1 cut(s)	111
BseBI	CCWGG	2 cut(s)	146, 263
BseDI	CCNNGG	1 cut(s)	231
BseJI	GATNNNNATC	1 cut(s)	111
BseMI	GCAATG	1 cut(s)	297
BseNI	ACTGG	2 cut(s)	280, 444
BseXI	GCAGC	3 cut(s)	202, 215, 230
BseYI	CCCAGC	1 cut(s)	206
Bsh1236I	CGCG	1 cut(s)	401
BshFI	GGCC	4 cut(s)	5, 36, 211, 281
BsiSI	CCGG	1 cut(s)	102
BsmAI	GTCTC	1 cut(s)	430
BsnI	GGCC	4 cut(s)	5, 36, 211, 281
Bsp143I	GATC	6 cut(s)	106, 112, 158, 193, 304, 319
BspACI	CCGC	2 cut(s)	126, 401
BspANI	GGCC	4 cut(s)	5, 36, 211, 281
BspFNI	CGCG	1 cut(s)	401
BspHI	TCATGA	1 cut(s)	316
BspLI	GGNNCC	1 cut(s)	280
BspMAI	CTGCAG	2 cut(s)	220, 334
BspPI	GGATC	4 cut(s)	101, 166, 188, 314
BsrDI	GCAATG	1 cut(s)	297
BsrFI	RCCGGY	1 cut(s)	101
BsrI	ACTGG	2 cut(s)	280, 444
BssAI	RCCGGY	1 cut(s)	101
BssECI	CCNNGG	1 cut(s)	231
BssMI	GATC	6 cut(s)	106, 112, 158, 193, 304, 319
BssSI	CACGAG	1 cut(s)	225
BssT1I	CCWWGG	1 cut(s)	231
Bst2BI	CACGAG	1 cut(s)	225
Bst2UI	CCWGG	2 cut(s)	146, 263
BstC8I	GCNNGC	2 cut(s)	182, 213
BstEII	GGTNACC	1 cut(s)	442
BstFNI	CGCG	1 cut(s)	401
BstKTI	GATC	6 cut(s)	109, 115, 161, 196, 307, 322
BstMAI	GTCTC	1 cut(s)	430
BstMBI	GATC	6 cut(s)	106, 112, 158, 193, 304, 319
BstMWI	GCNNNNNNNGC	3 cut(s)	212, 227, 287
BstNI	CCWGG	2 cut(s)	146, 263
BstNSI	RCATGY	1 cut(s)	184
BstPI	GGTNACC	1 cut(s)	442
BstSCI	CCNGG	2 cut(s)	144, 261
BstSFI	CTRYAG	2 cut(s)	216, 330
BstUI	CGCG	1 cut(s)	401
BstV1I	GCAGC	3 cut(s)	202, 215, 230
BsuRI	GGCC	4 cut(s)	5, 36, 211, 281
Cac8I	GCNNGC	2 cut(s)	182, 213
CciI	TCATGA	1 cut(s)	316
Cfr10I	RCCGGY	1 cut(s)	101
Cfr13I	GGNCC	3 cut(s)	142, 209, 279
CseI	GACGC	1 cut(s)	19
CviAII	CATG	3 cut(s)	181, 317, 369
CviJI	RGCY	7 cut(s)	5, 36, 206, 211, 215, 221, 281
CviKI_1	RGCY	7 cut(s)	5, 36, 206, 211, 215, 221, 281
DpnI	GATC	6 cut(s)	108, 114, 160, 195, 306, 321
DpnII	GATC	6 cut(s)	106, 112, 158, 193, 304, 319
Eco130I	CCWWGG	1 cut(s)	231
Eco47I	GGWCC	1 cut(s)	142
Eco57I	CTGAAG	2 cut(s)	80, 345
Eco91I	GGTNACC	1 cut(s)	442
EcoO109I	RGGNCCY	2 cut(s)	142, 279
EcoO65I	GGTNACC	1 cut(s)	442
EcoRI	GAATTC	1 cut(s)	253
EcoRII	CCWGG	2 cut(s)	144, 261
EcoT14I	CCWWGG	1 cut(s)	231
ErhI	CCWWGG	1 cut(s)	231
FaeI	CATG	3 cut(s)	184, 320, 372
FaiI	YATR	6 cut(s)	167, 182, 187, 286, 318, 370
FatI	CATG	3 cut(s)	180, 316, 368
Fnu4HI	GCNGC	3 cut(s)	204, 216, 219
Fsp4HI	GCNGC	3 cut(s)	204, 216, 219
GluI	GCNGC	3 cut(s)	204, 216, 219
GsaI	CCCAGC	1 cut(s)	210
HaeIII	GGCC	4 cut(s)	5, 36, 211, 281
HapII	CCGG	1 cut(s)	102
HgaI	GACGC	1 cut(s)	19
Hin1II	CATG	3 cut(s)	184, 320, 372
HinfI	GANTC	2 cut(s)	149, 422
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	3 cut(s)	115, 116, 436
Hpy188I	TCNGA	4 cut(s)	12, 163, 193, 352
Hpy188III	TCNNGA	2 cut(s)	110, 317
Hpy99I	CGWCG	1 cut(s)	35
HpyAV	CCTTC	3 cut(s)	55, 133, 289
HpyCH4V	TGCA	4 cut(s)	80, 218, 290, 332
HpyF10VI	GCNNNNNNNGC	3 cut(s)	212, 227, 287
Hsp92II	CATG	3 cut(s)	184, 320, 372
Kzo9I	GATC	6 cut(s)	106, 112, 158, 193, 304, 319
LmnI	GCTCC	1 cut(s)	64
Lsp1109I	GCAGC	3 cut(s)	202, 215, 230
MaeIII	GTNAC	3 cut(s)	364, 430, 442
MalI	GATC	6 cut(s)	108, 114, 160, 195, 306, 321
MboI	GATC	6 cut(s)	106, 112, 158, 193, 304, 319
MboII	GAAGA	1 cut(s)	370
MluCI	AATT	5 cut(s)	168, 173, 247, 253, 409
MnlI	CCTC	5 cut(s)	16, 47, 233, 324, 407
MseI	TTAA	1 cut(s)	83
MspA1I	CMGCKG	2 cut(s)	206, 215
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	2 cut(s)	146, 263
MvaI	CCWGG	2 cut(s)	146, 263
MvnI	CGCG	1 cut(s)	401
MwoI	GCNNNNNNNGC	3 cut(s)	212, 227, 287
NdeII	GATC	6 cut(s)	106, 112, 158, 193, 304, 319
NlaIII	CATG	3 cut(s)	184, 320, 372
NlaIV	GGNNCC	1 cut(s)	280
NmuCI	GTSAC	1 cut(s)	442
NspI	RCATGY	1 cut(s)	184
PaeI	GCATGC	1 cut(s)	184
PagI	TCATGA	1 cut(s)	316
PfeI	GAWTC	2 cut(s)	149, 422
PfoI	TCCNGGA	2 cut(s)	144, 261
PkrI	GCNGC	3 cut(s)	205, 217, 220
PpuMI	RGGWCCY	1 cut(s)	142
PshBI	ATTAAT	1 cut(s)	83
Psp5II	RGGWCCY	1 cut(s)	142
Psp6I	CCWGG	2 cut(s)	144, 261
PspEI	GGTNACC	1 cut(s)	442
PspFI	CCCAGC	1 cut(s)	206
PspGI	CCWGG	2 cut(s)	144, 261
PspN4I	GGNNCC	1 cut(s)	280
PspPI	GGNCC	3 cut(s)	142, 209, 279
PspPPI	RGGWCCY	1 cut(s)	142
PstI	CTGCAG	2 cut(s)	220, 334
PvuII	CAGCTG	2 cut(s)	206, 215
SaqAI	TTAA	1 cut(s)	83
SatI	GCNGC	3 cut(s)	204, 216, 219
Sau3AI	GATC	6 cut(s)	106, 112, 158, 193, 304, 319
Sau96I	GGNCC	3 cut(s)	142, 209, 279
ScrFI	CCNGG	2 cut(s)	146, 263
SetI	ASST	5 cut(s)	78, 144, 208, 217, 449
SfcI	CTRYAG	2 cut(s)	216, 330
SinI	GGWCC	1 cut(s)	142
SphI	GCATGC	1 cut(s)	184
Sse9I	AATT	5 cut(s)	168, 173, 247, 253, 409
SsiI	CCGC	2 cut(s)	126, 401
StyD4I	CCNGG	2 cut(s)	144, 261
StyI	CCWWGG	1 cut(s)	231
TasI	AATT	5 cut(s)	168, 173, 247, 253, 409
TfiI	GAWTC	2 cut(s)	149, 422
Tru1I	TTAA	1 cut(s)	83
Tru9I	TTAA	1 cut(s)	83
TseFI	GTSAC	1 cut(s)	442
TseI	GCWGC	3 cut(s)	203, 215, 218
Tsp45I	GTSAC	1 cut(s)	442
TspDTI	ATGAA	3 cut(s)	40, 308, 414
VpaK11BI	GGWCC	1 cut(s)	142
VspI	ATTAAT	1 cut(s)	83
XapI	RAATTY	2 cut(s)	253, 409
XceI	RCATGY	1 cut(s)	184
XcmI	CCANNNNNNNNNTGG	1 cut(s)	229

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.