Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0001966.1

Orthogroup ID

OG0004583

Physical Location & Seq

Genomic Coordinates Forward (+)

13984 .. 23342

Gene Structure 9359 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 4359 bp

atgtcgccggcgttgctagagtcccgagctccggcgcaccaccctaatctgaacaccggtcagatttctcaccctcctttctccttgttcaacttttctgaatataaatttaagatgaacccatcgaatgctagtgatgtgtcctctggatttgggaactctggtcacgattttagcttcaattcgtcgtccccttcgcgccaaggctcgggtcttgcgaggccgaggcttttgaaggtcagaaaaggcctcatcaatccgcagttattgagaccctcggccgaaaccggggctcctcctccgggatttaatccctttgggaactccgtttctggggaattcaggagtgattccgattcgaatttgaatccggggataggagtggctgaccaaatgagcaatttgaaaataattgggagtggcagtgagtttggggatgccaaagaagctgctggttttcattttgatacaggaactaggttgagttcgagttcgacttcagctgggaggttggatggaggtggttttgtatttggaagtgagtttttcaagagttctggttttgattacggcattgcgtcgaagcttcctgaggatatgagcaagttgaatattgagggccctgggaatggtggagctgttgagaaaggtgaggatcggaggtttgatggaggtgcaaataccttaaccgggtttgggcaggggagtaatgacaatgtgggtggttcattgggtagaaacgtgggatcggaactcccccacgagttggagaagaagttgaacattaacgagaatgtgcagatgggcggcaggactgacacgcataatgccgatggtgtgaataagtttgtatttaatactagtaagaaggatgaccattcctctgctggaagctcggtgaatgcacttccagataagatgaagaatctgaacataggtcttagttttgatggaagaaaagagagtcttctgttgagaaagatggagactttggatataggaactaaggctggacactctactcaatcagatacagggacatcttcccgccaaacatctgtgaagaacatggaaactgagagggaggatgaatttaattttacaagcaaacaagatcatttgagcacatcttccgtagagtttaaaacaccaaacactaaagccaacttgttttcgggcataaacaagaaattggaattcaatgcaaagcgggaaccagcaagggctaggcccgctagggatacaagaatgaaaaaagcaagtggaaaattaagacgtcctacttcatcccagctggggcttgggcatgatgttgtttcaaaaggtggttctccagtaaacgttgaggcttttgaatcctattcgccaatggacatttctccttatcaagaaacattggctgatcaccaatattcgaaagaaaattctgcatcttccgagtcatttagtctcgtcaacgattatccggaaaccgattcagttccaaaagttacaaataattctattgatgaagatcttgctatggcaacagaatgtctgaatataaataaagttgatgcagtgagcagacctccacaagaggaagcttttgagcaccatttaggtggaagtgttaatgctgatgaacctgttgaaggatctgtttctggggctgaaaccgaaagctttaagtctgcaactgatgaggtagactatatcagtgacaccgctaattcagcggagactgaagttagttcaagcccaaatatggagagacatgatactgatggcaggatacactttggctttcatgcaagttcattgaatagaagtggattaaacttcacgtttgctgcctctactgctgctcaatgtccattatcaccatcaaaacgcatgcacaaaaagaaaaatatggtaaaggctggtcaagatgccaatagttttgttccaaatgcaaaggttccatatggatcatcctctgcagagtttttgccatattctggagctccagtacgttcaactccaggacactatcaggaaataaaccctccaatttcagttatttcacaatgcaatgaagataattctggggttcagaaggaaaaggagatcaaacaagaggctgtctctttgtctgctgaaacagctgcagctcaggaagcatgtgagaagtggcgactaaggggtaaccaagcatattctaatggggatctatctaaagccgaggactgctatacccaaggggtaaatggtgtttctgaaaatgagacatctacaagctgtctcagggcactgatgctgtgctatagcaaccgtgcagcaacacgcatgtctcttggaagaattcgagatgcacttggagattgtatgatggctgctgcaatagatcctaacttcctcaaagtgcaagttagagctgccaactgttatcttacccttggggaggttcaagatgcttcaaaacattttagtaggtgcctccaattggcaagtgatgtctctgtcgaccaaaagattgcagtagaagcctctgatgggttacaaaaggcgcagaaagtgtctgaatgtctgaatctctgtgctgagcttatgcaaaggaagacatctaccaatgcagagagtgctttggaacttattgctgaggctttggcaattagccctagctcagaaaaattatttgaaatgaaagcagaggctcttttcacgatgcggaggtatgatgaggtgattgagctttgtgagaagacccttggttatgctgaaaagaactgccctttagtagataccgccatttctttagatggatctgaactctcaaagtacttgcacttcagactttggcggtgtcgtttgacttttaaatcctatttccatctaggaaaacttgaggagggccttgcttcactagagaaacaagaggaaaagttttctaccacgtataggaattggagaaaaactctggaatcatctattccccttgttcacattgttcgtgagctgttatcttataaggttgcagggaatgaagcatttcaggctgggaggcatactgaagctgttgaacgttatactactgctttgtcatgtaatgcggaatctcgtcctttcacagctgtttgtttttgcaatcgtgctgctgcatacaaagcgctgggtcagattactgacgctattgcagattgcagcctagctatagctcttgatggaagttatctaaaggctatttctaggcgagctacattatatgagatgatcagagattatggacaagcagctaaagatcttcatagacttgtatctcttctcactaagcagttagaggaaaatatcaatcaatgtggaacctctgatatatccaatagctgcaaaagtgatttgaaacaagctcgtcttcgtctttcagaaatagaagaagaagccagaaaggacatccccttggatatgtacattattctggcggacgtccgcactgtcgctaaagtgcggacgtcgacgcagcaggcggcgacggtagcccggggcttgcagcagggaggccagaggcgtcccggaccgttctgggcaccgttcgaggtcggaggaggtcaggcttaccggtttctgggcaaccacctcacctgcaactgcaggttctgtgcagcacctctaaacccgtcgccggcgactccacctgaccgcagacccctccgcacgacccctggtctccctccggcaagctccgccgtgccgtcgccgctcgatcgaggccggaccagcgacgtccgcactttttctgggttgcggacgtctgctctcgaactgctccgtcatcgacggacacacacacactcacacacacgaagccgttcgagagcggacgtccgcaacccagagaaagtgcggacgtcgctcctccggcctcgatcaagcatcgatggcgtggcgcagcttgacggacggaggccaggggtctgcgaagccagtctgccgtcgggtggagtcgccggcaagcggtttgcagcgctgtctagaacctgcagttgcagtggaatcaaaccatctatttcagcatcagaaattaagaaggcctatcggaaagctgcactcagacatcatcctgacaaggctgtacaattctttgctaggagtgaaacaggtgatgatgggctttggaaggagatagcagaagaagcgcacaaggatgctgacaggcttttcaaaatgattggggaggcatatgcagtactttcagactctaccaagcgtgcacggtatgatgctgaagaggagactaggaatgcgcagaagaaacgcactggaagcagtgcagctagaatgcctgcagatgctcaaaattacccatttgaaagaagcggaagtagccgacaatggagatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001671 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005737 GO:0005829 GO:0006457 GO:0006458 GO:0008047 GO:0008150 GO:0009987 GO:0030234 GO:0031072 GO:0031974 GO:0031981 GO:0032781 GO:0043085 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043462 GO:0044093 GO:0044422 GO:0044424 GO:0044428 GO:0044444 GO:0044446 GO:0044464 GO:0048583 GO:0050789 GO:0050790 GO:0050794 GO:0051084 GO:0051085 GO:0051336 GO:0051345 GO:0060589 GO:0060590 GO:0061077 GO:0065007 GO:0065009 GO:0070013 GO:0080134 GO:0080135 GO:0098772 GO:1900034

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DnaJ TPR_8

Protein Analysis

1452

Amino Acids

158.22

Weight (kDa)

8.09

Isoelectric Point (pI)

48.35

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DnaJ	PF00226	1337 - 1413	6.3e-12	DnaJ domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004583)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G12430
fragaria_vesca	FvH4_3g28360 FvH4_3g28360 FvH4_3g28360 FvH4_3g28360
malus_domestica	MD03G1171100.v1.1 MD03G1171300.v1.1 MD11G1188500.v1.1 MD11G1188700.v1.1
prunus_persica	Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1 Prupe.4G255700_v2.0.a1
pyrus_communis	pycom03g12820 pycom03g12830 pycom03g12840 pycom03g12860 pycom11g16530 pycom15g27190
rosa_chinensis	RchiOBHm_Chr5g0053371
rosa_laevigata	RLG00000034766
rosa_multiflora	Rmu_sc0001966.1_g000003
rosa_roxburghii	Rroxscaffold_1G00029100
rosa_rugosa	Rorug05G0267200 Rorug05G0267300
rosa_samantha	Rh5AG339800 Rh5BG350200 Rh5CG376600 Rh5DG364200
rosa_wichuraiana	Rw5G032070 Rw5G032080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2991
AarI	CACCTGC	1 cut(s)	3608
AatII	GACGTC	7 cut(s)	1279, 3447, 3473, 3744, 3770, 3843, 3869
Acc16I	TGCGCA	1 cut(s)	4263
Acc36I	ACCTGC	3 cut(s)	3600, 3608, 4004
AccB1I	GGYRCC	2 cut(s)	2457, 3544
AccB7I	CCANNNNNTGG	2 cut(s)	766, 1982
AccBSI	CCGCTC	2 cut(s)	3718, 3836
AccI	GTMKAC	3 cut(s)	1689, 2487, 3473
AccII	CGCG	1 cut(s)	199
AccIII	TCCGGA	1 cut(s)	1465
AclI	AACGTT	2 cut(s)	1341, 3046
AclWI	GGATC	7 cut(s)	663, 754, 1645, 1960, 2199, 2363, 2794
AcoI	YGGCCR	1 cut(s)	279
AcsI	RAATTY	7 cut(s)	107, 338, 361, 1091, 1196, 1423, 2325
AcuI	CTGAAG	5 cut(s)	483, 1746, 2797, 3054, 4263
AcyI	GRCGYC	8 cut(s)	1276, 3444, 3470, 3526, 3741, 3767, 3840, 3866
AfaI	GTAC	5 cut(s)	1995, 2804, 3428, 4092, 4206
AfeI	AGCGCT	2 cut(s)	3132, 3984
AgeI	ACCGGT	2 cut(s)	56, 3576
AhdI	GACNNNNNGTC	1 cut(s)	3681
AhlI	ACTAGT	1 cut(s)	860
AjnI	CCWGG	4 cut(s)	622, 2005, 3679, 3925
AjuI	GAANNNNNNNTTGG	2 cut(s)	1360, 1392
Alw21I	GWGCWC	5 cut(s)	31, 1127, 1596, 1990, 4231
Alw44I	GTGCAC	1 cut(s)	4227
AlwI	GGATC	7 cut(s)	663, 754, 1645, 1960, 2199, 2363, 2794
AlwNI	CAGNNNCTG	1 cut(s)	3615
Ama87I	CYCGRG	3 cut(s)	24, 208, 3498
Aor13HI	TCCGGA	1 cut(s)	1465
Aor51HI	AGCGCT	2 cut(s)	3132, 3984
ApaI	GGGCCC	1 cut(s)	623
ApaLI	GTGCAC	1 cut(s)	4227
ApoI	RAATTY	7 cut(s)	107, 338, 361, 1091, 1196, 1423, 2325
AsiGI	ACCGGT	2 cut(s)	56, 3576
Asp700I	GAANNNNTTC	2 cut(s)	3012, 3826
AspLEI	GCGC	8 cut(s)	37, 201, 2533, 3133, 3907, 3985, 4156, 4264
AspS9I	GGNCC	6 cut(s)	619, 620, 1230, 2875, 3533, 3732
AsuC2I	CCSGG	7 cut(s)	289, 303, 372, 691, 3499, 3500, 3531
AsuHPI	GGTGA	8 cut(s)	62, 662, 910, 1397, 1854, 2719, 3589, 4130
AsuII	TTCGAA	2 cut(s)	359, 1415
AvaI	CYCGRG	3 cut(s)	24, 208, 3498
AvaII	GGWCC	2 cut(s)	3533, 3732
AxyI	CCTNAGG	1 cut(s)	591
BaeGI	GKGCMC	4 cut(s)	623, 2275, 3547, 4231
BanI	GGYRCC	2 cut(s)	2457, 3544
BanII	GRGCYC	4 cut(s)	31, 295, 623, 1990
BarI	GAAGNNNNNNTAC	2 cut(s)	2795, 2827
BauI	CACGAG	1 cut(s)	761
BbsI	GAAGAC	4 cut(s)	959, 2588, 2732, 3365
Bbv12I	GWGCWC	5 cut(s)	31, 1127, 1596, 1990, 4231
BbvCI	CCTCAGC	1 cut(s)	2622
BceAI	ACGGC	5 cut(s)	586, 3689, 3694, 3810, 3934
BciT130I	CCWGG	4 cut(s)	624, 2007, 3681, 3927
BciVI	GTATCC	2 cut(s)	1234, 1767
BclI	TGATCA	2 cut(s)	1402, 3234
BcnI	CCSGG	7 cut(s)	289, 303, 372, 691, 3499, 3500, 3531
BcuI	ACTAGT	1 cut(s)	860
BfmI	CTRYAG	7 cut(s)	1962, 2130, 2287, 3174, 3607, 3997, 4302
BfoI	RGCGCY	2 cut(s)	3134, 3986
BfuAI	ACCTGC	3 cut(s)	3600, 3608, 4004
BfuI	GTATCC	2 cut(s)	1234, 1767
BglII	AGATCT	2 cut(s)	1513, 3262
BlpI	GCTNAGC	1 cut(s)	2565
BmcAI	AGTACT	2 cut(s)	2804, 4206
Bme18I	GGWCC	2 cut(s)	3533, 3732
BmeRI	GACNNNNNGTC	1 cut(s)	3681
BmeT110I	CYCGRG	3 cut(s)	24, 208, 3498
BmgT120I	GGNCC	6 cut(s)	619, 620, 1230, 2875, 3533, 3732
BmiI	GGNNCC	7 cut(s)	294, 621, 1215, 1944, 2459, 3325, 3546
BpiI	GAAGAC	4 cut(s)	959, 2588, 2732, 3365
BplI	GAGNNNNNCTC	6 cut(s)	1555, 1587, 2093, 2125, 2923, 2955
BpmI	CTGGAG	4 cut(s)	1317, 1974, 1989, 2004
Bpu10I	CCTNAGC	2 cut(s)	2136, 2622
Bpu1102I	GCTNAGC	1 cut(s)	2565
Bpu14I	TTCGAA	2 cut(s)	359, 1415
BpuEI	CTTGAG	1 cut(s)	2888
BpuMI	CCSGG	7 cut(s)	289, 303, 372, 691, 3499, 3500, 3531
Bsa29I	ATCGAT	1 cut(s)	3894
BsaAI	YACGTR	1 cut(s)	2919
BsaBI	GATNNNNATC	1 cut(s)	1512
BsaHI	GRCGYC	8 cut(s)	1276, 3444, 3470, 3526, 3741, 3767, 3840, 3866
BsaI	GGTCTC	2 cut(s)	265, 3689
BsaWI	WCCGGW	3 cut(s)	56, 1465, 3576
BsaXI	ACNNNNNCTCC	8 cut(s)	277, 307, 409, 439, 761, 791, 1977, 2007
Bse118I	RCCGGY	5 cut(s)	7, 56, 3576, 3640, 3965
Bse1I	ACTGG	4 cut(s)	1334, 1991, 3942, 4282
Bse21I	CCTNAGG	1 cut(s)	591
Bse3DI	GCAATG	2 cut(s)	573, 2062
Bse8I	GATNNNNATC	1 cut(s)	1512
BseAI	TCCGGA	1 cut(s)	1465
BseBI	CCWGG	4 cut(s)	624, 2007, 3681, 3927
BseCI	ATCGAT	1 cut(s)	3894
BseGI	GGATG	9 cut(s)	442, 520, 877, 1093, 1286, 1955, 3411, 4075, 4168
BseJI	GATNNNNATC	1 cut(s)	1512
BseMI	GCAATG	2 cut(s)	573, 2062
BseMII	CTCAG	8 cut(s)	582, 1068, 2150, 2281, 2556, 2613, 2661, 4081
BseNI	ACTGG	4 cut(s)	1334, 1991, 3942, 4282
BseRI	GAGGAG	6 cut(s)	285, 288, 2885, 3576, 3863, 4262
BseSI	GKGCMC	4 cut(s)	623, 2275, 3547, 4231
BseX3I	CGGCCG	1 cut(s)	279
BseYI	CCCAGC	5 cut(s)	503, 1290, 1294, 3020, 3133
BsgI	GTGCAG	5 cut(s)	818, 2319, 3639, 4047, 4308
Bsh1236I	CGCG	1 cut(s)	199
Bsh1285I	CGRYCG	2 cut(s)	282, 3724
BshNI	GGYRCC	2 cut(s)	2457, 3544
BshTI	ACCGGT	2 cut(s)	56, 3576
BshVI	ATCGAT	1 cut(s)	3894
BsiEI	CGRYCG	2 cut(s)	282, 3724
BsiHKAI	GWGCWC	5 cut(s)	31, 1127, 1596, 1990, 4231
BsiHKCI	CYCGRG	3 cut(s)	24, 208, 3498
BslFI	GGGAC	4 cut(s)	7, 175, 1051, 3513
BsmFI	GGGAC	4 cut(s)	7, 175, 1051, 3513
BsmI	GAATGC	4 cut(s)	133, 907, 4264, 4302
Bso31I	GGTCTC	2 cut(s)	265, 3689
BsoBI	CYCGRG	3 cut(s)	24, 208, 3498
Bsp119I	TTCGAA	2 cut(s)	359, 1415
Bsp120I	GGGCCC	1 cut(s)	619
Bsp1286I	GDGCHC	9 cut(s)	31, 295, 623, 1127, 1596, 1990, 2275, 3547, 4231
Bsp13I	TCCGGA	1 cut(s)	1465
Bsp1407I	TGTACA	2 cut(s)	3426, 4090
Bsp1720I	GCTNAGC	1 cut(s)	2565
BspCNI	CTCAG	8 cut(s)	583, 1069, 2149, 2280, 2557, 2614, 2660, 4080
BspDI	ATCGAT	1 cut(s)	3894
BspEI	TCCGGA	1 cut(s)	1465
BspFNI	CGCG	1 cut(s)	199
BspLI	GGNNCC	7 cut(s)	294, 621, 1215, 1944, 2459, 3325, 3546
BspMAI	CTGCAG	5 cut(s)	1966, 2134, 3611, 4001, 4306
BspMI	ACCTGC	3 cut(s)	3600, 3608, 4004
BspPI	GGATC	7 cut(s)	663, 754, 1645, 1960, 2199, 2363, 2794
BspT104I	TTCGAA	2 cut(s)	359, 1415
BspT107I	GGYRCC	2 cut(s)	2457, 3544
BspTNI	GGTCTC	2 cut(s)	265, 3689
BsrBI	CCGCTC	2 cut(s)	3718, 3836
BsrDI	GCAATG	2 cut(s)	573, 2062
BsrFI	RCCGGY	5 cut(s)	7, 56, 3576, 3640, 3965
BsrGI	TGTACA	2 cut(s)	3426, 4090
BsrI	ACTGG	4 cut(s)	1334, 1991, 3942, 4282
BssAI	RCCGGY	5 cut(s)	7, 56, 3576, 3640, 3965
BssNI	GRCGYC	8 cut(s)	1276, 3444, 3470, 3526, 3741, 3767, 3840, 3866
BssSI	CACGAG	1 cut(s)	761
BssT1I	CCWWGG	5 cut(s)	202, 2221, 2419, 2731, 3417
Bst2BI	CACGAG	1 cut(s)	761
Bst2UI	CCWGG	4 cut(s)	624, 2007, 3681, 3927
Bst4CI	ACNGT	7 cut(s)	2297, 2408, 3454, 3493, 3537, 3549, 4233
Bst6I	CTCTTC	2 cut(s)	3288, 4239
BstACI	GRCGYC	8 cut(s)	1276, 3444, 3470, 3526, 3741, 3767, 3840, 3866
BstAPI	GCANNNNNTGC	1 cut(s)	2603
BstAUI	TGTACA	2 cut(s)	3426, 4090
BstBAI	YACGTR	1 cut(s)	2919
BstBI	TTCGAA	2 cut(s)	359, 1415
BstEII	GGTNACC	1 cut(s)	2168
BstENI	CCTNNNNNAGG	2 cut(s)	1632, 2423
BstF5I	GGATG	9 cut(s)	442, 520, 877, 1093, 1286, 1955, 3411, 4075, 4168
BstFNI	CGCG	1 cut(s)	199
BstH2I	RGCGCY	2 cut(s)	3134, 3986
BstHHI	GCGC	8 cut(s)	37, 201, 2533, 3133, 3907, 3985, 4156, 4264
BstMCI	CGRYCG	2 cut(s)	282, 3724
BstNI	CCWGG	4 cut(s)	624, 2007, 3681, 3927
BstNSI	RCATGY	3 cut(s)	1879, 2148, 2314
BstPI	GGTNACC	1 cut(s)	2168
BstSFI	CTRYAG	7 cut(s)	1962, 2130, 2287, 3174, 3607, 3997, 4302
BstSLI	GKGCMC	4 cut(s)	623, 2275, 3547, 4231
BstUI	CGCG	1 cut(s)	199
BstV2I	GAAGAC	4 cut(s)	959, 2588, 2732, 3365
BstX2I	RGATCY	6 cut(s)	1513, 1637, 2191, 2368, 2786, 3262
BstXI	CCANNNNNNTGG	1 cut(s)	1604
BstYI	RGATCY	6 cut(s)	1513, 1637, 2191, 2368, 2786, 3262
BstZI	CGGCCG	1 cut(s)	279
Bsu15I	ATCGAT	1 cut(s)	3894
Bsu36I	CCTNAGG	1 cut(s)	591
BsuI	GTATCC	2 cut(s)	1234, 1767
BsuTUI	ATCGAT	1 cut(s)	3894
BtsCI	GGATG	9 cut(s)	442, 520, 877, 1093, 1286, 1955, 3411, 4075, 4168
BtsI	GCAGTG	4 cut(s)	430, 1566, 4012, 4291
BtsIMutI	CAGTG	8 cut(s)	430, 1566, 1705, 2273, 3450, 4012, 4275, 4291
BveI	ACCTGC	3 cut(s)	3600, 3608, 4004
CaiI	CAGNNNCTG	1 cut(s)	3615
CfoI	GCGC	8 cut(s)	37, 201, 2533, 3133, 3907, 3985, 4156, 4264
Cfr10I	RCCGGY	5 cut(s)	7, 56, 3576, 3640, 3965
Cfr13I	GGNCC	6 cut(s)	619, 620, 1230, 2875, 3533, 3732
Cfr9I	CCCGGG	1 cut(s)	3498
ClaI	ATCGAT	1 cut(s)	3894
CpoI	CGGWCCG	1 cut(s)	3533
CseI	GACGC	4 cut(s)	567, 3158, 3484, 3515
Csp6I	GTAC	5 cut(s)	1994, 2803, 3427, 4091, 4205
CspAI	ACCGGT	2 cut(s)	56, 3576
CspCI	CAANNNNNGTGG	4 cut(s)	703, 738, 3301, 3336
CspI	CGGWCCG	1 cut(s)	3533
CviAII	CATG	8 cut(s)	1069, 1307, 1757, 1790, 1876, 2145, 2311, 3066
CviQI	GTAC	5 cut(s)	1994, 2803, 3427, 4091, 4205
DraI	TTTAAA	2 cut(s)	1144, 2842
DriI	GACNNNNNGTC	1 cut(s)	3681
EaeI	YGGCCR	1 cut(s)	279
EagI	CGGCCG	1 cut(s)	279
Eam1104I	CTCTTC	2 cut(s)	3288, 4239
Eam1105I	GACNNNNNGTC	1 cut(s)	3681
EarI	CTCTTC	2 cut(s)	3288, 4239
EciI	GGCGGA	2 cut(s)	3455, 3691
Ecl136II	GAGCTC	2 cut(s)	29, 1988
EclXI	CGGCCG	1 cut(s)	279
Eco130I	CCWWGG	5 cut(s)	202, 2221, 2419, 2731, 3417
Eco147I	AGGCCT	2 cut(s)	249, 4049
Eco24I	GRGCYC	4 cut(s)	31, 295, 623, 1990
Eco31I	GGTCTC	2 cut(s)	265, 3689
Eco47I	GGWCC	2 cut(s)	3533, 3732
Eco47III	AGCGCT	2 cut(s)	3132, 3984
Eco52I	CGGCCG	1 cut(s)	279
Eco53kI	GAGCTC	2 cut(s)	29, 1988
Eco57I	CTGAAG	5 cut(s)	483, 1746, 2797, 3054, 4263
Eco81I	CCTNAGG	1 cut(s)	591
Eco88I	CYCGRG	3 cut(s)	24, 208, 3498
Eco91I	GGTNACC	1 cut(s)	2168
EcoICRI	GAGCTC	2 cut(s)	29, 1988
EcoNI	CCTNNNNNAGG	2 cut(s)	1632, 2423
EcoO109I	RGGNCCY	3 cut(s)	619, 620, 2875
EcoO65I	GGTNACC	1 cut(s)	2168
EcoRI	GAATTC	3 cut(s)	338, 1196, 2325
EcoRII	CCWGG	4 cut(s)	622, 2005, 3679, 3925
EcoT14I	CCWWGG	5 cut(s)	202, 2221, 2419, 2731, 3417
EcoT38I	GRGCYC	4 cut(s)	31, 295, 623, 1990
ErhI	CCWWGG	5 cut(s)	202, 2221, 2419, 2731, 3417
FaeI	CATG	8 cut(s)	1072, 1310, 1760, 1793, 1879, 2148, 2314, 3069
FalI	AAGNNNNNCTT	4 cut(s)	951, 983, 3357, 3389
FaqI	GGGAC	4 cut(s)	7, 175, 1051, 3513
FatI	CATG	8 cut(s)	1068, 1306, 1756, 1789, 1875, 2144, 2310, 3065
FauI	CCCGC	3 cut(s)	1055, 1203, 1240
FauNDI	CATATG	2 cut(s)	1948, 4198
FbaI	TGATCA	2 cut(s)	1402, 3234
FblI	GTMKAC	3 cut(s)	1689, 2487, 3473
FokI	GGATG	9 cut(s)	449, 527, 884, 1100, 1273, 1942, 3398, 4062, 4175
FriOI	GRGCYC	4 cut(s)	31, 295, 623, 1990
FspI	TGCGCA	1 cut(s)	4263
GlaI	GCGC	8 cut(s)	36, 200, 2532, 3132, 3906, 3984, 4155, 4263
GsaI	CCCAGC	5 cut(s)	507, 1294, 1298, 3024, 3137
GsuI	CTGGAG	4 cut(s)	1317, 1974, 1989, 2004
HaeII	RGCGCY	2 cut(s)	3134, 3986
HgaI	GACGC	4 cut(s)	567, 3158, 3484, 3515
HhaI	GCGC	8 cut(s)	37, 201, 2533, 3133, 3907, 3985, 4156, 4264
Hin1I	GRCGYC	8 cut(s)	1276, 3444, 3470, 3526, 3741, 3767, 3840, 3866
Hin1II	CATG	8 cut(s)	1072, 1310, 1760, 1793, 1879, 2148, 2314, 3069
Hin6I	GCGC	8 cut(s)	35, 199, 2531, 3131, 3905, 3983, 4154, 4262
HinP1I	GCGC	8 cut(s)	35, 199, 2531, 3131, 3905, 3983, 4154, 4262
HincII	GTYRAC	3 cut(s)	1456, 2488, 3474
HindII	GTYRAC	3 cut(s)	1456, 2488, 3474
HindIII	AAGCTT	3 cut(s)	584, 1584, 1663
HphI	GGTGA	8 cut(s)	62, 662, 910, 1397, 1854, 2719, 3589, 4130
Hpy166II	GTNNAC	7 cut(s)	1339, 1456, 1690, 2488, 2965, 3474, 4229
Hpy8I	GTNNAC	7 cut(s)	1339, 1456, 1690, 2488, 2965, 3474, 4229
HpyAV	CCTTC	7 cut(s)	204, 229, 862, 1628, 2074, 4039, 4129
HpyCH4III	ACNGT	7 cut(s)	2297, 2408, 3454, 3493, 3537, 3549, 4233
Hsp92I	GRCGYC	8 cut(s)	1276, 3444, 3470, 3526, 3741, 3767, 3840, 3866
Hsp92II	CATG	8 cut(s)	1072, 1310, 1760, 1793, 1879, 2148, 2314, 3069
HspAI	GCGC	8 cut(s)	35, 199, 2531, 3131, 3905, 3983, 4154, 4262
Kpn2I	TCCGGA	1 cut(s)	1465
KroI	GCCGGC	3 cut(s)	7, 3640, 3965
KroNI	GCCGGC	3 cut(s)	9, 3642, 3967
Ksp22I	TGATCA	2 cut(s)	1402, 3234
LmnI	GCTCC	8 cut(s)	34, 298, 635, 1985, 1993, 3704, 3789, 3876
MaeIII	GTNAC	5 cut(s)	164, 1489, 1700, 2168, 2520
MbiI	CCGCTC	2 cut(s)	3718, 3836
MfeI	CAATTG	1 cut(s)	2465
MflI	RGATCY	6 cut(s)	1513, 1637, 2191, 2368, 2786, 3262
MhlI	GDGCHC	9 cut(s)	31, 295, 623, 1127, 1596, 1990, 2275, 3547, 4231
MlyI	GAGTC	6 cut(s)	29, 973, 1448, 3640, 3969, 4208
MmeI	TCCRAC	3 cut(s)	492, 747, 3538
MreI	CGCCGGCG	2 cut(s)	7, 3640
MroI	TCCGGA	1 cut(s)	1465
MroNI	GCCGGC	3 cut(s)	7, 3640, 3965
MroXI	GAANNNNTTC	2 cut(s)	3012, 3826
MslI	CAYNNNNRTG	2 cut(s)	1602, 4161
MspA1I	CMGCKG	5 cut(s)	503, 1294, 1718, 2129, 3095
MunI	CAATTG	1 cut(s)	2465
Mva1269I	GAATGC	4 cut(s)	133, 907, 4264, 4302
MvaI	CCWGG	4 cut(s)	624, 2007, 3681, 3927
MvnI	CGCG	1 cut(s)	199
NaeI	GCCGGC	3 cut(s)	9, 3642, 3967
NciI	CCSGG	7 cut(s)	289, 303, 372, 691, 3499, 3500, 3531
NdeI	CATATG	2 cut(s)	1948, 4198
NgoMIV	GCCGGC	3 cut(s)	7, 3640, 3965
NlaIII	CATG	8 cut(s)	1072, 1310, 1760, 1793, 1879, 2148, 2314, 3069
NlaIV	GGNNCC	7 cut(s)	294, 621, 1215, 1944, 2459, 3325, 3546
NmeAIII	GCCGAG	3 cut(s)	249, 257, 2230
NmuCI	GTSAC	2 cut(s)	164, 1700
NsbI	TGCGCA	1 cut(s)	4263
NspI	RCATGY	3 cut(s)	1879, 2148, 2314
NspV	TTCGAA	2 cut(s)	359, 1415
PaeI	GCATGC	1 cut(s)	1879
PaqCI	CACCTGC	1 cut(s)	3608
PasI	CCCWGGG	1 cut(s)	623
PceI	AGGCCT	2 cut(s)	249, 4049
PcsI	WCGNNNNNNNCGW	1 cut(s)	215
PctI	GAATGC	4 cut(s)	133, 907, 4264, 4302
PdiI	GCCGGC	3 cut(s)	9, 3642, 3967
PdmI	GAANNNNTTC	2 cut(s)	3012, 3826
PflMI	CCANNNNNTGG	2 cut(s)	766, 1982
PfoI	TCCNGGA	3 cut(s)	301, 2005, 3529
PinAI	ACCGGT	2 cut(s)	56, 3576
Ple19I	CGATCG	1 cut(s)	3724
PleI	GAGTC	6 cut(s)	28, 972, 1447, 3640, 3968, 4208
PpsI	GAGTC	6 cut(s)	28, 972, 1447, 3640, 3968, 4208
Ppu21I	YACGTR	1 cut(s)	2919
PsiI	TTATAA	1 cut(s)	2991
Psp124BI	GAGCTC	2 cut(s)	31, 1990
Psp1406I	AACGTT	2 cut(s)	1341, 3046
Psp6I	CCWGG	4 cut(s)	622, 2005, 3679, 3925
PspEI	GGTNACC	1 cut(s)	2168
PspFI	CCCAGC	5 cut(s)	503, 1290, 1294, 3020, 3133
PspGI	CCWGG	4 cut(s)	622, 2005, 3679, 3925
PspN4I	GGNNCC	7 cut(s)	294, 621, 1215, 1944, 2459, 3325, 3546
PspOMI	GGGCCC	1 cut(s)	619
PspPI	GGNCC	6 cut(s)	619, 620, 1230, 2875, 3533, 3732
PstI	CTGCAG	5 cut(s)	1966, 2134, 3611, 4001, 4306
PstNI	CAGNNNCTG	1 cut(s)	3615
PsuI	RGATCY	6 cut(s)	1513, 1637, 2191, 2368, 2786, 3262
PvuI	CGATCG	1 cut(s)	3724
PvuII	CAGCTG	4 cut(s)	503, 1294, 2129, 3095
RsaI	GTAC	5 cut(s)	1995, 2804, 3428, 4092, 4206
RsaNI	GTAC	5 cut(s)	1994, 2803, 3427, 4091, 4205
RseI	CAYNNNNRTG	2 cut(s)	1602, 4161
Rsr2I	CGGWCCG	1 cut(s)	3533
RsrII	CGGWCCG	1 cut(s)	3533
SacI	GAGCTC	2 cut(s)	31, 1990
SalI	GTCGAC	2 cut(s)	2486, 3472
Sau96I	GGNCC	6 cut(s)	619, 620, 1230, 2875, 3533, 3732
ScaI	AGTACT	2 cut(s)	2804, 4206
SchI	GAGTC	6 cut(s)	29, 973, 1448, 3640, 3969, 4208
SduI	GDGCHC	9 cut(s)	31, 295, 623, 1127, 1596, 1990, 2275, 3547, 4231
SfcI	CTRYAG	7 cut(s)	1962, 2130, 2287, 3174, 3607, 3997, 4302
SfuI	TTCGAA	2 cut(s)	359, 1415
SgrAI	CRCCGGYG	2 cut(s)	7, 3640
SgrDI	CGTCGACG	1 cut(s)	3472
SinI	GGWCC	2 cut(s)	3533, 3732
SmaI	CCCGGG	1 cut(s)	3500
SmiMI	CAYNNNNRTG	2 cut(s)	1602, 4161
SmlI	CTYRAG	1 cut(s)	2867
SmoI	CTYRAG	1 cut(s)	2867
SpeI	ACTAGT	1 cut(s)	860
SphI	GCATGC	1 cut(s)	1879
SseBI	AGGCCT	2 cut(s)	249, 4049
SspI	AATATT	2 cut(s)	613, 1412
SstI	GAGCTC	2 cut(s)	31, 1990
StuI	AGGCCT	2 cut(s)	249, 4049
StyI	CCWWGG	5 cut(s)	202, 2221, 2419, 2731, 3417
TaaI	ACNGT	7 cut(s)	2297, 2408, 3454, 3493, 3537, 3549, 4233
TatI	WGTACW	4 cut(s)	2802, 3426, 4090, 4204
TauI	GCSGC	3 cut(s)	810, 3488, 3718
TscAI	CASTG	8 cut(s)	430, 1566, 1705, 2280, 3457, 4012, 4282, 4291
TseFI	GTSAC	2 cut(s)	164, 1700
Tsp45I	GTSAC	2 cut(s)	164, 1700
TspGWI	ACGGA	6 cut(s)	316, 1123, 3776, 3811, 3930, 3934
TspMI	CCCGGG	1 cut(s)	3498
TspRI	CASTG	8 cut(s)	430, 1566, 1705, 2280, 3457, 4012, 4282, 4291
Van91I	CCANNNNNTGG	2 cut(s)	766, 1982
VneI	GTGCAC	1 cut(s)	4227
VpaK11BI	GGWCC	2 cut(s)	3533, 3732
XagI	CCTNNNNNAGG	2 cut(s)	1632, 2423
XapI	RAATTY	7 cut(s)	107, 338, 361, 1091, 1196, 1423, 2325
XbaI	TCTAGA	1 cut(s)	3989
XceI	RCATGY	3 cut(s)	1879, 2148, 2314
XcmI	CCANNNNNNNNNTGG	3 cut(s)	884, 1298, 2228
XmaI	CCCGGG	1 cut(s)	3498
XmiI	GTMKAC	3 cut(s)	1689, 2487, 3473
XmnI	GAANNNNTTC	2 cut(s)	3012, 3826
ZraI	GACGTC	7 cut(s)	1277, 3445, 3471, 3742, 3768, 3841, 3867
ZrmI	AGTACT	2 cut(s)	2804, 4206

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.