Rmu_sc0002512.1_g000003

palmitoyl-(protein) hydrolase activity

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002512.1
OG0007162
Physical Location & Seq
Forward (+)
12206 .. 13316
1111 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 672 bp
atgtacggtagtgtgaggaagatgatcagattatggatagccgcactgcaattttcggagctgtttgtgagcaccatggttcatttgctttatgggttttacatattcagctccgccgtcgccggtgacctctcgctggcattgaatgagctcttgtgtaagcccaacacggacaagaaagagtcggtgcccagtgggacctcggccaatggggctctgcctcctattgtgttggtccatgggatttttggctttggcaaagggaggctgggaggtttgtcgtatttcgccggagctgagaagaaagacgagagggttctggtgccggatttgggatctctgaccagcgtttacgacagggctcgtgagttgttctactatttgaaaggtgggcgggtcgattatggtgaagaacacagcaaagcctgtgggcattcccagtttggccgtctttatgaacaagggcactaccctgaatgggatgaggatcatcctattcactttgtgggccattccgccggagctcaggtcgtccgtgttctgcagcaaatgcttgctgataaggctttcaaggggtatgagaatactaatgagaattgggtattgagcatcacatcattgtccggagcgttcaatgggactacaagaacttacttggatggaatgcagtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

223

Amino Acids

24.68

Weight (kDa)

6.44

Isoelectric Point (pI)

21.0

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Lip_C PF24708 75 - 187 1.4e-20 Lipase-like, C-terminal domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 2 cut(s) 187, 322
AccIII TCCGGA 1 cut(s) 623
AciI CCGC 4 cut(s) 42, 114, 394, 516
AclWI GGATC 2 cut(s) 343, 495
AcoI YGGCCR 2 cut(s) 204, 445
AdeI CACNNNGTG 1 cut(s) 505
AfaI GTAC 1 cut(s) 5
AfiI CCNNNNNNNGG 3 cut(s) 136, 332, 478
AgsI TTSAA 4 cut(s) 145, 385, 571, 634
AluBI AGCT 5 cut(s) 61, 111, 151, 296, 524
AluI AGCT 5 cut(s) 61, 111, 151, 296, 524
Alw21I GWGCWC 3 cut(s) 74, 153, 526
AlwI GGATC 2 cut(s) 343, 495
Aor13HI TCCGGA 1 cut(s) 623
AoxI GGCC 3 cut(s) 204, 445, 508
ApeKI GCWGC 1 cut(s) 544
AspS9I GGNCC 3 cut(s) 198, 235, 508
AsuHPI GGTGA 2 cut(s) 137, 419
AvaII GGWCC 2 cut(s) 198, 235
BaeGI GKGCMC 2 cut(s) 192, 468
BanI GGYRCC 2 cut(s) 187, 322
BanII GRGCYC 4 cut(s) 153, 217, 364, 526
BauI CACGAG 1 cut(s) 363
Bbv12I GWGCWC 3 cut(s) 74, 153, 526
BbvI GCAGC 1 cut(s) 556
BccI CCATC 1 cut(s) 653
BceAI ACGGC 2 cut(s) 101, 432
BclI TGATCA 1 cut(s) 24
BfmI CTRYAG 1 cut(s) 542
BglI GCCNNNNNGGC 1 cut(s) 212
BisI GCNGC 2 cut(s) 42, 545
BlsI GCNGC 2 cut(s) 43, 546
Bme18I GGWCC 2 cut(s) 198, 235
BmgT120I GGNCC 3 cut(s) 198, 235, 508
BmiI GGNNCC 3 cut(s) 189, 199, 324
BmrI ACTGGG 2 cut(s) 186, 433
BmsI GCATC 1 cut(s) 618
BmuI ACTGGG 2 cut(s) 186, 433
Bpu10I CCTNAGC 1 cut(s) 525
BsaBI GATNNNNATC 1 cut(s) 486
BsaJI CCNNGG 3 cut(s) 75, 201, 238
BsaWI WCCGGW 1 cut(s) 623
BsaXI ACNNNNNCTCC 2 cut(s) 513, 543
Bsc4I CCNNNNNNNGG 3 cut(s) 136, 332, 478
Bse118I RCCGGY 1 cut(s) 122
Bse1I ACTGG 2 cut(s) 192, 439
Bse8I GATNNNNATC 1 cut(s) 486
BseAI TCCGGA 1 cut(s) 623
BseDI CCNNGG 3 cut(s) 75, 201, 238
BseGI GGATG 3 cut(s) 487, 490, 664
BseJI GATNNNNATC 1 cut(s) 486
BseLI CCNNNNNNNGG 3 cut(s) 136, 332, 478
BseMII CTCAG 2 cut(s) 288, 539
BseNI ACTGG 2 cut(s) 192, 439
BseSI GKGCMC 2 cut(s) 192, 468
BseXI GCAGC 1 cut(s) 556
BseYI CCCAGC 1 cut(s) 268
BshFI GGCC 3 cut(s) 206, 447, 510
BshNI GGYRCC 2 cut(s) 187, 322
BsiHKAI GWGCWC 3 cut(s) 74, 153, 526
BsiSI CCGG 5 cut(s) 123, 291, 326, 519, 624
BslFI GGGAC 2 cut(s) 211, 652
BslI CCNNNNNNNGG 3 cut(s) 136, 332, 478
BsmFI GGGAC 2 cut(s) 211, 652
BsmI GAATGC 2 cut(s) 433, 669
BsnI GGCC 3 cut(s) 206, 447, 510
Bsp1286I GDGCHC 7 cut(s) 74, 153, 192, 217, 364, 468, 526
Bsp13I TCCGGA 1 cut(s) 623
Bsp143I GATC 3 cut(s) 24, 335, 487
Bsp19I CCATGG 2 cut(s) 75, 238
BspACI CCGC 4 cut(s) 42, 114, 394, 516
BspANI GGCC 3 cut(s) 206, 447, 510
BspCNI CTCAG 2 cut(s) 289, 538
BspEI TCCGGA 1 cut(s) 623
BspLI GGNNCC 3 cut(s) 189, 199, 324
BspMAI CTGCAG 1 cut(s) 546
BspPI GGATC 2 cut(s) 343, 495
BspT107I GGYRCC 2 cut(s) 187, 322
BsrFI RCCGGY 1 cut(s) 122
BsrI ACTGG 2 cut(s) 192, 439
BssAI RCCGGY 1 cut(s) 122
BssECI CCNNGG 3 cut(s) 75, 201, 238
BssMI GATC 3 cut(s) 24, 335, 487
BssSI CACGAG 1 cut(s) 363
BssT1I CCWWGG 2 cut(s) 75, 238
Bst2BI CACGAG 1 cut(s) 363
Bst4CI ACNGT 1 cut(s) 8
BstAPI GCANNNNNTGC 1 cut(s) 550
BstC8I GCNNGC 2 cut(s) 138, 555
BstDEI CTNAG 2 cut(s) 297, 525
BstDSI CCRYGG 2 cut(s) 75, 238
BstEII GGTNACC 1 cut(s) 125
BstF5I GGATG 3 cut(s) 487, 490, 664
BstKTI GATC 3 cut(s) 27, 338, 490
BstMBI GATC 3 cut(s) 24, 335, 487
BstMWI GCNNNNNNNGC 3 cut(s) 212, 550, 563
BstPI GGTNACC 1 cut(s) 125
BstSFI CTRYAG 1 cut(s) 542
BstSLI GKGCMC 2 cut(s) 192, 468
BstV1I GCAGC 1 cut(s) 556
BstX2I RGATCY 1 cut(s) 335
BstYI RGATCY 1 cut(s) 335
BsuRI GGCC 3 cut(s) 206, 447, 510
BtgI CCRYGG 2 cut(s) 75, 238
BtsCI GGATG 3 cut(s) 487, 490, 664
BtsI GCAGTG 1 cut(s) 44
BtsIMutI CAGTG 2 cut(s) 44, 199
Cac8I GCNNGC 2 cut(s) 138, 555
Cfr10I RCCGGY 1 cut(s) 122
Cfr13I GGNCC 3 cut(s) 198, 235, 508
Csp6I GTAC 1 cut(s) 4
CspCI CAANNNNNGTGG 2 cut(s) 409, 444
CviAII CATG 2 cut(s) 76, 239
CviQI GTAC 1 cut(s) 4
DdeI CTNAG 2 cut(s) 297, 525
DpnI GATC 3 cut(s) 26, 337, 489
DpnII GATC 3 cut(s) 24, 335, 487
DraIII CACNNNGTG 1 cut(s) 505
EaeI YGGCCR 2 cut(s) 204, 445
EciI GGCGGA 2 cut(s) 103, 505
Ecl136II GAGCTC 2 cut(s) 151, 524
Eco130I CCWWGG 2 cut(s) 75, 238
Eco24I GRGCYC 4 cut(s) 153, 217, 364, 526
Eco47I GGWCC 2 cut(s) 198, 235
Eco53kI GAGCTC 2 cut(s) 151, 524
Eco91I GGTNACC 1 cut(s) 125
EcoICRI GAGCTC 2 cut(s) 151, 524
EcoO109I RGGNCCY 1 cut(s) 198
EcoO65I GGTNACC 1 cut(s) 125
EcoT14I CCWWGG 2 cut(s) 75, 238
EcoT38I GRGCYC 4 cut(s) 153, 217, 364, 526
ErhI CCWWGG 2 cut(s) 75, 238
FaeI CATG 2 cut(s) 79, 242
FaiI YATR 8 cut(s) 34, 77, 93, 104, 240, 405, 456, 579
FaqI GGGAC 2 cut(s) 211, 652
FatI CATG 2 cut(s) 75, 238
FauI CCCGC 1 cut(s) 387
FbaI TGATCA 1 cut(s) 24
Fnu4HI GCNGC 2 cut(s) 42, 545
FokI GGATG 2 cut(s) 477, 494
FriOI GRGCYC 4 cut(s) 153, 217, 364, 526
Fsp4HI GCNGC 2 cut(s) 42, 545
GluI GCNGC 2 cut(s) 42, 545
GsaI CCCAGC 1 cut(s) 272
HaeIII GGCC 3 cut(s) 206, 447, 510
HapII CCGG 5 cut(s) 123, 291, 326, 519, 624
Hin1II CATG 2 cut(s) 79, 242
HinfI GANTC 1 cut(s) 182
HpaII CCGG 5 cut(s) 123, 291, 326, 519, 624
HphI GGTGA 2 cut(s) 137, 419
Hpy166II GTNNAC 1 cut(s) 352
Hpy188I TCNGA 3 cut(s) 29, 58, 342
Hpy188III TCNNGA 2 cut(s) 365, 624
Hpy8I GTNNAC 1 cut(s) 352
Hpy99I CGWCG 1 cut(s) 122
HpyCH4III ACNGT 1 cut(s) 8
HpyCH4V TGCA 3 cut(s) 49, 544, 667
HpyF10VI GCNNNNNNNGC 3 cut(s) 212, 550, 563
HpyF3I CTNAG 2 cut(s) 297, 525
Hsp92II CATG 2 cut(s) 79, 242
Kpn2I TCCGGA 1 cut(s) 623
Ksp22I TGATCA 1 cut(s) 24
Kzo9I GATC 3 cut(s) 24, 335, 487
LmnI GCTCC 5 cut(s) 58, 116, 293, 521, 626
Lsp1109I GCAGC 1 cut(s) 556
LweI GCATC 1 cut(s) 618
MaeIII GTNAC 1 cut(s) 125
MalI GATC 3 cut(s) 26, 337, 489
MboI GATC 3 cut(s) 24, 335, 487
MboII GAAGA 3 cut(s) 31, 313, 422
MflI RGATCY 1 cut(s) 335
MhlI GDGCHC 7 cut(s) 74, 153, 192, 217, 364, 468, 526
MluCI AATT 2 cut(s) 50, 595
MlyI GAGTC 1 cut(s) 191
MnlI CCTC 8 cut(s) 9, 140, 211, 231, 258, 266, 306, 478
MroI TCCGGA 1 cut(s) 623
MspI CCGG 5 cut(s) 123, 291, 326, 519, 624
Mva1269I GAATGC 2 cut(s) 433, 669
MwoI GCNNNNNNNGC 3 cut(s) 212, 550, 563
NcoI CCATGG 2 cut(s) 75, 238
NdeII GATC 3 cut(s) 24, 335, 487
NlaIII CATG 2 cut(s) 79, 242
NlaIV GGNNCC 3 cut(s) 189, 199, 324
NmeAIII GCCGAG 1 cut(s) 182
NmuCI GTSAC 1 cut(s) 125
PctI GAATGC 2 cut(s) 433, 669
PkrI GCNGC 2 cut(s) 43, 546
PleI GAGTC 1 cut(s) 190
PpsI GAGTC 1 cut(s) 190
PpuMI RGGWCCY 1 cut(s) 198
Psp124BI GAGCTC 2 cut(s) 153, 526
Psp5II RGGWCCY 1 cut(s) 198
PspEI GGTNACC 1 cut(s) 125
PspFI CCCAGC 1 cut(s) 268
PspN4I GGNNCC 3 cut(s) 189, 199, 324
PspPI GGNCC 3 cut(s) 198, 235, 508
PspPPI RGGWCCY 1 cut(s) 198
PstI CTGCAG 1 cut(s) 546
PsuI RGATCY 1 cut(s) 335
RsaI GTAC 1 cut(s) 5
RsaNI GTAC 1 cut(s) 4
SacI GAGCTC 2 cut(s) 153, 526
SatI GCNGC 2 cut(s) 42, 545
Sau3AI GATC 3 cut(s) 24, 335, 487
Sau96I GGNCC 3 cut(s) 198, 235, 508
SchI GAGTC 1 cut(s) 191
SduI GDGCHC 7 cut(s) 74, 153, 192, 217, 364, 468, 526
SfaNI GCATC 1 cut(s) 618
SfcI CTRYAG 1 cut(s) 542
SgrAI CRCCGGYG 1 cut(s) 122
SinI GGWCC 2 cut(s) 198, 235
Sse9I AATT 2 cut(s) 50, 595
SsiI CCGC 4 cut(s) 42, 114, 394, 516
SstI GAGCTC 2 cut(s) 153, 526
StyI CCWWGG 2 cut(s) 75, 238
TaaI ACNGT 1 cut(s) 8
TaqI TCGA 1 cut(s) 399
TasI AATT 2 cut(s) 50, 595
TauI GCSGC 1 cut(s) 44
TscAI CASTG 2 cut(s) 51, 199
TseFI GTSAC 1 cut(s) 125
TseI GCWGC 1 cut(s) 544
Tsp45I GTSAC 1 cut(s) 125
TspDTI ATGAA 2 cut(s) 71, 471
TspGWI ACGGA 2 cut(s) 185, 524
TspRI CASTG 2 cut(s) 51, 199
VpaK11BI GGWCC 2 cut(s) 198, 235
XcmI CCANNNNNNNNNTGG 1 cut(s) 245
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.