Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002525.1

Orthogroup ID

OG0002491

Physical Location & Seq

Genomic Coordinates Forward (+)

67606 .. 69049

Gene Structure 1444 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 846 bp

atggtacgccaattcggtactcaatttaacatttctgctgtttttacagagaattttagtagctacggttcaaatttgagttatgttggtggttttctgattgagaatttttgccgaaatggggagttggattctgctgttgaggcattggtctgtatgtgtgcattgggtgcttcggtgcctcctttgatgtgtgttgcatgtagagaaaatcagagaggagcggaggatttctttgatgtgttactaagggttggtccggagccgaatgtggtgacttttagcaccatgattaacacgtacggtaaagatcggaggttggaagaggcaattaagctttatgaggttatgaaagagaagggtatcagtccggacttggttgtgtatagcattcttattgacagtctctttaaggcagggaagttggaggaggggcatcgacttttttctgttgcattagatagtgggattaagttggatgtagtcatcttcagttctgttatggatgcatatgtaagaactagaaatttggaaaagctagtggagatgtacagaaggatgtataacgaagggatctcacagaacactgttagttacagtccgcacgcctcctctacttcaccctcagcccaccacctcacttgccatgctcctgctgctcaccacaacgcaactagtattgctagccttcggaccgctcgtcccctcgcaccaagctgctgccctcggccttctacctttggcaacaactgcaaactctcctcttccatcgacgccaacttcttcaagctcccaagctttcaaacttcaaggtttcaatctccaattaatcaagatgccgtatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

281

Amino Acids

31.01

Weight (kDa)

6.65

Isoelectric Point (pI)

43.52

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPR_24	PF23276	75 - 186	2.4e-07	Fungal tetratrico peptide repeats
PPR_1	PF12854	86 - 118	3.1e-09	PPR repeat
PPR_3	PF13812	86 - 134	2.5e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	89 - 138	2e-16	PPR repeat family
PPR	PF01535	92 - 122	3.3e-08	PPR repeat
PPR_1	PF12854	120 - 150	2e-07	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31840 AT1G31840
malus_domestica	MD12G1033400.v1.1
prunus_persica	Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1
pyrus_communis	pycom12g03070
rosa_chinensis	RchiOBHm_Chr2g0139321 RchiOBHm_Chr7g0227311
rosa_laevigata	RLG00000001660
rosa_multiflora	Rmu_sc0001246.1_g000012 Rmu_sc0002525.1_g000013 Rmu_sc0003153.1_g000006 Rmu_sc0011922.1_g000005
rosa_roxburghii	Rroxscaffold_3G00232240
rosa_rugosa	Rorug07G0241200
rosa_samantha	Rh2BG417100 Rh7AG391100 Rh7AG391600 Rh7AG392200 Rh7AG392500 Rh7BG376100 Rh7CG192200 Rh7CG410100 Rh7CG410500 Rh7CG411300 Rh7CG411800 Rh7DG388700
rosa_wichuraiana	Rw7G032710 Rw7G032740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	178
AccBSI	CCGCTC	2 cut(s)	224, 698
AccIII	TCCGGA	2 cut(s)	259, 370
AciI	CCGC	3 cut(s)	224, 602, 696
AclWI	GGATC	1 cut(s)	581
AcsI	RAATTY	4 cut(s)	52, 73, 106, 526
AcuI	CTGAAG	1 cut(s)	475
AcyI	GRCGYC	1 cut(s)	774
AfaI	GTAC	4 cut(s)	6, 19, 302, 551
AfiI	CCNNNNNNNGG	1 cut(s)	121
AflIII	ACRYGT	1 cut(s)	297
AgsI	TTSAA	5 cut(s)	72, 787, 803, 810, 818
AhdI	GACNNNNNGTC	1 cut(s)	699
AhlI	ACTAGT	1 cut(s)	674
AluBI	AGCT	6 cut(s)	63, 337, 538, 717, 790, 798
AluI	AGCT	6 cut(s)	63, 337, 538, 717, 790, 798
Alw26I	GTCTC	1 cut(s)	410
AlwI	GGATC	1 cut(s)	581
Aor13HI	TCCGGA	2 cut(s)	259, 370
AoxI	GGCC	1 cut(s)	728
ApeKI	GCWGC	3 cut(s)	656, 717, 720
ApoI	RAATTY	4 cut(s)	52, 73, 106, 526
AseI	ATTAAT	1 cut(s)	828
AspS9I	GGNCC	2 cut(s)	257, 693
AsuHPI	GGTGA	3 cut(s)	286, 612, 653
AsuNHI	GCTAGC	1 cut(s)	683
AvaII	GGWCC	2 cut(s)	257, 693
BanI	GGYRCC	1 cut(s)	178
BbvCI	CCTCAGC	1 cut(s)	625
BbvI	GCAGC	3 cut(s)	643, 704, 707
BccI	CCATC	1 cut(s)	776
BceAI	ACGGC	1 cut(s)	824
BcoDI	GTCTC	1 cut(s)	410
BcuI	ACTAGT	1 cut(s)	674
BfaI	CTAG	4 cut(s)	522, 539, 675, 684
BisI	GCNGC	3 cut(s)	657, 718, 721
BlsI	GCNGC	3 cut(s)	658, 719, 722
Bme18I	GGWCC	2 cut(s)	257, 693
BmeRI	GACNNNNNGTC	1 cut(s)	699
BmgT120I	GGNCC	2 cut(s)	257, 693
BmiI	GGNNCC	2 cut(s)	180, 264
BmsI	GCATC	3 cut(s)	445, 496, 826
BmtI	GCTAGC	1 cut(s)	687
Bpu10I	CCTNAGC	1 cut(s)	625
BsaAI	YACGTR	1 cut(s)	300
BsaHI	GRCGYC	1 cut(s)	774
BsaJI	CCNNGG	1 cut(s)	725
BsaWI	WCCGGW	2 cut(s)	259, 370
Bsc4I	CCNNNNNNNGG	1 cut(s)	121
BseAI	TCCGGA	2 cut(s)	259, 370
BseDI	CCNNGG	1 cut(s)	725
BseGI	GGATG	3 cut(s)	484, 511, 564
BseLI	CCNNNNNNNGG	1 cut(s)	121
BseMII	CTCAG	1 cut(s)	639
BseRI	GAGGAG	4 cut(s)	234, 443, 601, 751
BseXI	GCAGC	3 cut(s)	643, 704, 707
BshFI	GGCC	1 cut(s)	730
BshNI	GGYRCC	1 cut(s)	178
BsiSI	CCGG	2 cut(s)	260, 371
BsiWI	CGTACG	1 cut(s)	300
BslFI	GGGAC	1 cut(s)	687
BslI	CCNNNNNNNGG	1 cut(s)	121
BsmAI	GTCTC	1 cut(s)	410
BsmFI	GGGAC	1 cut(s)	687
BsmI	GAATGC	1 cut(s)	390
BsnI	GGCC	1 cut(s)	730
Bsp13I	TCCGGA	2 cut(s)	259, 370
Bsp1407I	TGTACA	1 cut(s)	549
Bsp143I	GATC	2 cut(s)	310, 573
BspACI	CCGC	3 cut(s)	224, 602, 696
BspANI	GGCC	1 cut(s)	730
BspCNI	CTCAG	1 cut(s)	638
BspEI	TCCGGA	2 cut(s)	259, 370
BspLI	GGNNCC	2 cut(s)	180, 264
BspOI	GCTAGC	1 cut(s)	687
BspPI	GGATC	1 cut(s)	581
BspT107I	GGYRCC	1 cut(s)	178
BsrBI	CCGCTC	2 cut(s)	224, 698
BsrGI	TGTACA	1 cut(s)	549
BssECI	CCNNGG	1 cut(s)	725
BssMI	GATC	2 cut(s)	310, 573
BssNI	GRCGYC	1 cut(s)	774
Bst4CI	ACNGT	5 cut(s)	68, 305, 404, 589, 599
Bst6I	CTCTTC	2 cut(s)	318, 769
BstACI	GRCGYC	1 cut(s)	774
BstAPI	GCANNNNNTGC	2 cut(s)	170, 750
BstAUI	TGTACA	1 cut(s)	549
BstBAI	YACGTR	1 cut(s)	300
BstC8I	GCNNGC	2 cut(s)	606, 685
BstDEI	CTNAG	2 cut(s)	248, 625
BstF5I	GGATG	3 cut(s)	484, 511, 564
BstKTI	GATC	2 cut(s)	313, 576
BstMAI	GTCTC	1 cut(s)	410
BstMBI	GATC	2 cut(s)	310, 573
BstMWI	GCNNNNNNNGC	4 cut(s)	143, 170, 656, 750
BstNSI	RCATGY	1 cut(s)	204
BstV1I	GCAGC	3 cut(s)	643, 704, 707
BstX2I	RGATCY	1 cut(s)	573
BstYI	RGATCY	1 cut(s)	573
BsuRI	GGCC	1 cut(s)	730
BtsCI	GGATG	3 cut(s)	484, 511, 564
BtsIMutI	CAGTG	1 cut(s)	585
Cac8I	GCNNGC	2 cut(s)	606, 685
Cfr13I	GGNCC	2 cut(s)	257, 693
CpoI	CGGWCCG	1 cut(s)	693
CseI	GACGC	1 cut(s)	782
Csp6I	GTAC	4 cut(s)	5, 18, 301, 550
CspCI	CAANNNNNGTGG	2 cut(s)	623, 658
CspI	CGGWCCG	1 cut(s)	693
CviAII	CATG	3 cut(s)	201, 289, 647
CviQI	GTAC	4 cut(s)	5, 18, 301, 550
DdeI	CTNAG	2 cut(s)	248, 625
DpnI	GATC	2 cut(s)	312, 575
DpnII	GATC	2 cut(s)	310, 573
DriI	GACNNNNNGTC	1 cut(s)	699
Eam1104I	CTCTTC	2 cut(s)	318, 769
Eam1105I	GACNNNNNGTC	1 cut(s)	699
EarI	CTCTTC	2 cut(s)	318, 769
Eco47I	GGWCC	2 cut(s)	257, 693
Eco57I	CTGAAG	1 cut(s)	475
EcoT22I	ATGCAT	1 cut(s)	511
FaeI	CATG	3 cut(s)	204, 292, 650
FaqI	GGGAC	1 cut(s)	687
FatI	CATG	3 cut(s)	200, 288, 646
FauNDI	CATATG	1 cut(s)	511
Fnu4HI	GCNGC	3 cut(s)	657, 718, 721
FokI	GGATG	3 cut(s)	491, 518, 571
Fsp4HI	GCNGC	3 cut(s)	657, 718, 721
FspBI	CTAG	4 cut(s)	522, 539, 675, 684
GluI	GCNGC	3 cut(s)	657, 718, 721
HaeIII	GGCC	1 cut(s)	730
HapII	CCGG	2 cut(s)	260, 371
HgaI	GACGC	1 cut(s)	782
Hin1I	GRCGYC	1 cut(s)	774
Hin1II	CATG	3 cut(s)	204, 292, 650
HindIII	AAGCTT	2 cut(s)	335, 796
HinfI	GANTC	1 cut(s)	131
HpaII	CCGG	2 cut(s)	260, 371
HphI	GGTGA	3 cut(s)	286, 612, 653
Hpy188I	TCNGA	4 cut(s)	99, 216, 315, 693
Hpy188III	TCNNGA	3 cut(s)	260, 371, 833
Hpy99I	CGWCG	1 cut(s)	776
HpyAV	CCTTC	5 cut(s)	352, 549, 563, 698, 741
HpyCH4III	ACNGT	5 cut(s)	68, 305, 404, 589, 599
HpyCH4IV	ACGT	1 cut(s)	299
HpyCH4V	TGCA	5 cut(s)	164, 200, 455, 509, 753
HpyF10VI	GCNNNNNNNGC	4 cut(s)	143, 170, 656, 750
HpyF3I	CTNAG	2 cut(s)	248, 625
HpySE526I	ACGT	1 cut(s)	299
Hsp92I	GRCGYC	1 cut(s)	774
Hsp92II	CATG	3 cut(s)	204, 292, 650
Kpn2I	TCCGGA	2 cut(s)	259, 370
Kzo9I	GATC	2 cut(s)	310, 573
LmnI	GCTCC	4 cut(s)	221, 262, 655, 795
LpnPI	CCDG	4 cut(s)	273, 384, 402, 666
Lsp1109I	GCAGC	3 cut(s)	643, 704, 707
LweI	GCATC	3 cut(s)	445, 496, 826
MaeI	CTAG	4 cut(s)	522, 539, 675, 684
MaeII	ACGT	1 cut(s)	299
MaeIII	GTNAC	3 cut(s)	243, 274, 593
MalI	GATC	2 cut(s)	312, 575
MbiI	CCGCTC	2 cut(s)	224, 698
MboI	GATC	2 cut(s)	310, 573
MboII	GAAGA	4 cut(s)	335, 481, 756, 775
MflI	RGATCY	1 cut(s)	573
MluCI	AATT	8 cut(s)	11, 23, 52, 73, 106, 330, 526, 825
MmeI	TCCRAC	4 cut(s)	108, 300, 405, 456
Mph1103I	ATGCAT	1 cut(s)	511
MroI	TCCGGA	2 cut(s)	259, 370
MseI	TTAA	6 cut(s)	27, 294, 333, 411, 471, 828
MspI	CCGG	2 cut(s)	260, 371
Mva1269I	GAATGC	1 cut(s)	390
MwoI	GCNNNNNNNGC	4 cut(s)	143, 170, 656, 750
NdeI	CATATG	1 cut(s)	511
NdeII	GATC	2 cut(s)	310, 573
NheI	GCTAGC	1 cut(s)	683
NlaIII	CATG	3 cut(s)	204, 292, 650
NlaIV	GGNNCC	2 cut(s)	180, 264
NmeAIII	GCCGAG	1 cut(s)	706
NmuCI	GTSAC	1 cut(s)	274
NsiI	ATGCAT	1 cut(s)	511
NspI	RCATGY	1 cut(s)	204
PcsI	WCGNNNNNNNCGW	1 cut(s)	697
PctI	GAATGC	1 cut(s)	390
PfeI	GAWTC	1 cut(s)	131
Pfl23II	CGTACG	1 cut(s)	300
PkrI	GCNGC	3 cut(s)	658, 719, 722
Ppu21I	YACGTR	1 cut(s)	300
PshBI	ATTAAT	1 cut(s)	828
PspLI	CGTACG	1 cut(s)	300
PspN4I	GGNNCC	2 cut(s)	180, 264
PspPI	GGNCC	2 cut(s)	257, 693
PsrI	GAACNNNNNNTAC	2 cut(s)	52, 84
PsuI	RGATCY	1 cut(s)	573
RsaI	GTAC	4 cut(s)	6, 19, 302, 551
RsaNI	GTAC	4 cut(s)	5, 18, 301, 550
Rsr2I	CGGWCCG	1 cut(s)	693
RsrII	CGGWCCG	1 cut(s)	693
SaqAI	TTAA	6 cut(s)	27, 294, 333, 411, 471, 828
SatI	GCNGC	3 cut(s)	657, 718, 721
Sau3AI	GATC	2 cut(s)	310, 573
Sau96I	GGNCC	2 cut(s)	257, 693
SfaNI	GCATC	3 cut(s)	445, 496, 826
SinI	GGWCC	2 cut(s)	257, 693
SpeI	ACTAGT	1 cut(s)	674
Sse9I	AATT	8 cut(s)	11, 23, 52, 73, 106, 330, 526, 825
SsiI	CCGC	3 cut(s)	224, 602, 696
SspMI	CTAG	4 cut(s)	522, 539, 675, 684
TaaI	ACNGT	5 cut(s)	68, 305, 404, 589, 599
TaiI	ACGT	1 cut(s)	302
TaqI	TCGA	2 cut(s)	439, 771
TasI	AATT	8 cut(s)	11, 23, 52, 73, 106, 330, 526, 825
TatI	WGTACW	1 cut(s)	549
TfiI	GAWTC	1 cut(s)	131
Tru1I	TTAA	6 cut(s)	27, 294, 333, 411, 471, 828
Tru9I	TTAA	6 cut(s)	27, 294, 333, 411, 471, 828
TscAI	CASTG	1 cut(s)	592
TseFI	GTSAC	1 cut(s)	274
TseI	GCWGC	3 cut(s)	656, 717, 720
Tsp45I	GTSAC	1 cut(s)	274
TspDTI	ATGAA	1 cut(s)	365
TspRI	CASTG	1 cut(s)	592
VpaK11BI	GGWCC	2 cut(s)	257, 693
VspI	ATTAAT	1 cut(s)	828
XapI	RAATTY	4 cut(s)	52, 73, 106, 526
XceI	RCATGY	1 cut(s)	204
XspI	CTAG	4 cut(s)	522, 539, 675, 684
Zsp2I	ATGCAT	1 cut(s)	511

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.