Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002675.1

Orthogroup ID

OG0002327

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 5199

Gene Structure 5199 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2293 bp

aagacctgaagctacatcgtttctaagtgatcggccggcaatgtggagctcttgtgctctggttgttacactacttgcttctcttcttcttcttcttcttcctcacttggcagctctgatctctgctgatcagggctccaccactagtcagtggcaaacactcaaaggcaagccgcctttggtcatagcacgcgggggtttttcaggactattacctggttctagttctgacgcatacaagttcacattgtccactagtgtaccagatgtgttattttggtgcgatgtccaactaacaaaggaaggagctggaatttgctttccagatctgctactgaataacaattctaatgttgatatcatctatccaaagaaggacaagacttacatagttaacggagttcctactggcggatggttcaccatcgattatactcttaaggagcttgcaaatgtttctattactcagggagtatttagtcgagctaataggtttgatgacaatttgtacccaattctcaccgttgaagatgtggctatgaatttgacaccaccaggcttatggttgaatattgagaacaatttcttcttctcacaacacaacttgagtatgagaaactttgtgctttctgtaatgagaaaagtggttgtgaattatatctcatcgccggaggtggctttcctgaacagtattaaaggagttgttagtccaagaactactgtgttggtctttcggtttctggaacaaactgagattgagccttcaaccaatcaaacttatggatctctgttaaagaatctcacattcatcaagacatttgcctcgggaattctagttcctaaaacttacatatggccagtcactaatgacaattatttagaaccacacacttcacttgttttggatgctcatgaagcagaactaatggtatttgcgtccgatttggtgaatgatgtgccattaccctacaactacagttatgatccattagctgagtgcctgtcattcatagacaatggcaacttcactgttgatggtgtgctgtctgactttccgataactccatcagcagccatagacaagcctttggttatatcgaaaaatggagcaagcggagactaccctgattgtactgatttggcatatatgaaagcacttgaagatggtgtgaatgtactcgattgtcctgtccaaatgtccaaggacgggataccattttgctccagttctataaaccttattcatagcacaacagttgctcaatcaagttttcagaacttaacaatggttgttccggagattcaggctgacaatggaatatatacttttagcctgacatgggatcagatcaagacattacaaccaagtatatcaaacccccagcagactcggtacaagttgaacaggaatccaaggttcaaaaatgttgggacttacaagagattatctgatttttttaccttggcaaagaacaggagctctgtttcaggtgtcataatcagcatagagtatgcagcatatcttgcagagaagcagggattaagtgtaacagatgcagtcattaatgagttgaacaaagctggtttggacaatcagacagccctagatgtcatgattcagtccactaatagttctgttctaatgaaatttaaggaggaaagcaattgtaaacttgtttacaagatcgaagaagttattggtgatgcccttaatacaactcttcaggacatcaagaagtttgccaattctgtggtcatcaacaaggcctctgtccttcctgaaaatagtgaatacatcactggagcaaccaatgttgtaacaaagctgcatgcatttgatcttcctgtttatgtcgaactgttcagcaatgagtatgtatctcaagcatgggacttcttctctgatccaactgttgagatcaattcatttgtctccggggccaatgttgatggtgttatcacagatttccccaaaacagctgctagatacaaaagaaacaggtgtttattttataaagagagacctagctacatgaatcctgttccgccaggcgcgctgttaacagttgtttctcctcgtcaattgccaccggctgaggctccgaacccagtgctgatagagagtgatgtgattgaaccacctttgccttccgccttagctccagggatcaccaatggatctacagtagcaccaccaccaccaccaccacctccaaacgggcagcctaagattgctgcatgcttctttctctcaaatctggctttgcttgttgccacccttttactgctctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000902 GO:0000904 GO:0003674 GO:0003824 GO:0005488 GO:0005509 GO:0005575 GO:0005618 GO:0005623 GO:0005886 GO:0005911 GO:0005975 GO:0005976 GO:0006073 GO:0006950 GO:0006952 GO:0006968 GO:0007275 GO:0008081 GO:0008150 GO:0008152 GO:0008889 GO:0009505 GO:0009506 GO:0009653 GO:0009664 GO:0009791 GO:0009826 GO:0009888 GO:0009932 GO:0009987 GO:0010015 GO:0010016 GO:0010026 GO:0010052 GO:0010053 GO:0010054 GO:0010103 GO:0010374 GO:0010383 GO:0010441 GO:0010442 GO:0016020 GO:0016043 GO:0016049 GO:0016787 GO:0016788 GO:0021700 GO:0022622 GO:0030054 GO:0030154 GO:0030243 GO:0030312 GO:0031224 GO:0031225 GO:0031226 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0042578 GO:0043167 GO:0043169 GO:0043170 GO:0044036 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044425 GO:0044459 GO:0044464 GO:0045229 GO:0046658 GO:0046872 GO:0048364 GO:0048367 GO:0048468 GO:0048469 GO:0048589 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0050896 GO:0051273 GO:0052541 GO:0055044 GO:0060560 GO:0071554 GO:0071555 GO:0071669 GO:0071695 GO:0071704 GO:0071840 GO:0071944 GO:0090558 GO:0090626 GO:0090627 GO:0090698 GO:0099402 GO:1905392

KEGG Pathways

Metabolic & Signaling

ko00564 map00564

Pfam Domains

Protein Families

GDPD

Protein Analysis

763

Amino Acids

83.67

Weight (kDa)

4.97

Isoelectric Point (pI)

39.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
GDPD	PF03009	369 - 659	6.6e-26	Glycerophosphoryl diester phosphodiesterase family

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002327)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G66970 AT1G66970 AT1G66970 AT4G26690
fragaria_vesca	FvH4_3g13670 FvH4_3g13670 FvH4_3g13670 FvH4_3g30290 FvH4_3g30290
malus_domestica	MD03G1190400.v1.1 MD11G1207100.v1.1
prunus_persica	Prupe.4G228400_v2.0.a1 Prupe.4G228400_v2.0.a1
pyrus_communis	pycom03g14330 pycom03g14370 pycom11g18010
rosa_chinensis	RchiOBHm_Chr5g0022921 RchiOBHm_Chr5g0056171
rosa_laevigata	RLG00000032682 RLG00000035057 RLG00000035060
rosa_multiflora	Rmu_sc0000680.1_g000027 Rmu_sc0001787.1_g000024 Rmu_sc0002675.1_g000001
rosa_roxburghii	Rroxscaffold_1G00024130 Rroxscaffold_1G00056420
rosa_rugosa	Rorug05G0075500 Rorug05G0297800 Rorug05G0297800
rosa_samantha	Rh5AG162000 Rh5AG368900 Rh5BG161200 Rh5BG379900 Rh5CG175800 Rh5CG402700 Rh5DG162500 Rh5DG392700 Rh5DG392900
rosa_wichuraiana	Rw0G004450 Rw0G012690 Rw5G014580 Rw5G034630

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	2014
AccII	CGCG	2 cut(s)	193, 2055
AccIII	TCCGGA	1 cut(s)	1295
AciI	CCGC	6 cut(s)	174, 193, 412, 1114, 2046, 2152
AclWI	GGATC	6 cut(s)	791, 978, 1351, 1899, 2175, 2186
AcoI	YGGCCR	2 cut(s)	33, 855
AcsI	RAATTY	4 cut(s)	313, 542, 829, 1647
AcuI	CTGAAG	2 cut(s)	28, 1707
AfaI	GTAC	5 cut(s)	262, 510, 1133, 1177, 1395
AfiI	CCNNNNNNNGG	4 cut(s)	411, 1207, 1340, 2217
AflII	CTTAAG	1 cut(s)	438
AgsI	TTSAA	8 cut(s)	528, 569, 766, 1161, 1403, 1421, 1574, 2136
AhlI	ACTAGT	2 cut(s)	144, 255
AjnI	CCWGG	4 cut(s)	215, 554, 2048, 2162
AjuI	GAANNNNNNNTTGG	2 cut(s)	1681, 1713
AloI	GAACNNNNNNTCC	2 cut(s)	820, 852
Alw21I	GWGCWC	3 cut(s)	51, 59, 1482
Alw26I	GTCTC	3 cut(s)	1111, 1937, 2015
AlwI	GGATC	6 cut(s)	791, 978, 1351, 1899, 2175, 2186
Ama87I	CYCGRG	1 cut(s)	824
Aor13HI	TCCGGA	1 cut(s)	1295
AoxI	GGCC	4 cut(s)	33, 855, 1765, 1939
ApeKI	GCWGC	7 cut(s)	111, 1071, 1515, 1826, 1980, 2222, 2235
ApoI	RAATTY	4 cut(s)	313, 542, 829, 1647
AseI	ATTAAT	1 cut(s)	1564
Asp700I	GAANNNNTTC	1 cut(s)	582
AspLEI	GCGC	2 cut(s)	2055, 2057
AspS9I	GGNCC	1 cut(s)	1939
AsuC2I	CCSGG	1 cut(s)	1937
AsuHPI	GGTGA	5 cut(s)	413, 512, 959, 1713, 2162
AvaI	CYCGRG	1 cut(s)	824
BaeI	ACNNNNGTAYC	2 cut(s)	244, 277
BalI	TGGCCA	1 cut(s)	857
BanII	GRGCYC	3 cut(s)	51, 138, 1482
Bbv12I	GWGCWC	3 cut(s)	51, 59, 1482
BbvCI	CCTCAGC	1 cut(s)	2095
BbvI	GCAGC	7 cut(s)	123, 1083, 1527, 1813, 1967, 2222, 2234
BccI	CCATC	6 cut(s)	409, 432, 1029, 1073, 1158, 1944
BcgI	CGANNNNNNTGC	2 cut(s)	2093, 2127
BciT130I	CCWGG	4 cut(s)	217, 556, 2050, 2164
BciVI	GTATCC	1 cut(s)	1204
BclI	TGATCA	1 cut(s)	128
BcnI	CCSGG	1 cut(s)	1937
BcoDI	GTCTC	3 cut(s)	1111, 1937, 2015
BcuI	ACTAGT	2 cut(s)	144, 255
BfaI	CTAG	7 cut(s)	145, 223, 256, 834, 1605, 1984, 2026
BfmI	CTRYAG	2 cut(s)	974, 2182
BfrI	CTTAAG	1 cut(s)	438
BfuI	GTATCC	1 cut(s)	1204
BglII	AGATCT	1 cut(s)	326
BisI	GCNGC	8 cut(s)	112, 174, 1072, 1516, 1827, 1981, 2223, 2236
BlsI	GCNGC	8 cut(s)	113, 175, 1073, 1517, 1828, 1982, 2224, 2237
Bme1390I	CCNGG	5 cut(s)	217, 556, 1937, 2050, 2164
BmeT110I	CYCGRG	1 cut(s)	824
BmgT120I	GGNCC	1 cut(s)	1939
BmiI	GGNNCC	3 cut(s)	137, 1940, 2101
BmrFI	CCNGG	5 cut(s)	217, 556, 1937, 2050, 2164
BmrI	ACTGGG	1 cut(s)	2103
BmsI	GCATC	3 cut(s)	896, 1544, 1694
BmuI	ACTGGG	1 cut(s)	2103
BpmI	CTGGAG	3 cut(s)	1208, 1822, 2146
Bpu10I	CCTNAGC	2 cut(s)	2095, 2156
BpuEI	CTTGAG	2 cut(s)	626, 1867
BpuMI	CCSGG	1 cut(s)	1937
Bsa29I	ATCGAT	1 cut(s)	427
BsaI	GGTCTC	1 cut(s)	2015
BsaJI	CCNNGG	6 cut(s)	823, 1201, 1413, 1462, 1936, 2163
BsaWI	WCCGGW	1 cut(s)	1295
BsaXI	ACNNNNNCTCC	2 cut(s)	38, 68
Bsc4I	CCNNNNNNNGG	4 cut(s)	411, 1207, 1340, 2217
Bse118I	RCCGGY	2 cut(s)	35, 2090
Bse1I	ACTGG	5 cut(s)	413, 858, 1225, 1805, 2109
Bse3DI	GCAATG	2 cut(s)	46, 1874
BseAI	TCCGGA	1 cut(s)	1295
BseBI	CCWGG	4 cut(s)	217, 556, 2050, 2164
BseCI	ATCGAT	1 cut(s)	427
BseDI	CCNNGG	6 cut(s)	823, 1201, 1413, 1462, 1936, 2163
BseGI	GGATG	2 cut(s)	420, 911
BseLI	CCNNNNNNNGG	4 cut(s)	411, 1207, 1340, 2217
BseMI	GCAATG	2 cut(s)	46, 1874
BseMII	CTCAG	4 cut(s)	480, 742, 985, 2086
BseNI	ACTGG	5 cut(s)	413, 858, 1225, 1805, 2109
BsePI	GCGCGC	1 cut(s)	2053
BseRI	GAGGAG	1 cut(s)	2065
BseX3I	CGGCCG	1 cut(s)	33
BseXI	GCAGC	7 cut(s)	123, 1083, 1527, 1813, 1967, 2222, 2234
BseYI	CCCAGC	1 cut(s)	1381
Bsh1236I	CGCG	2 cut(s)	193, 2055
Bsh1285I	CGRYCG	1 cut(s)	36
BshFI	GGCC	4 cut(s)	35, 857, 1767, 1941
BshVI	ATCGAT	1 cut(s)	427
BsiEI	CGRYCG	1 cut(s)	36
BsiHKAI	GWGCWC	3 cut(s)	51, 59, 1482
BsiHKCI	CYCGRG	1 cut(s)	824
BsiSI	CCGG	5 cut(s)	36, 669, 1296, 1936, 2091
BslFI	GGGAC	2 cut(s)	1445, 1905
BslI	CCNNNNNNNGG	4 cut(s)	411, 1207, 1340, 2217
BsmAI	GTCTC	3 cut(s)	1111, 1937, 2015
BsmFI	GGGAC	2 cut(s)	1445, 1905
BsnI	GGCC	4 cut(s)	35, 857, 1767, 1941
Bso31I	GGTCTC	1 cut(s)	2015
BsoBI	CYCGRG	1 cut(s)	824
Bsp1286I	GDGCHC	4 cut(s)	51, 59, 138, 1482
Bsp13I	TCCGGA	1 cut(s)	1295
BspACI	CCGC	6 cut(s)	174, 193, 412, 1114, 2046, 2152
BspANI	GGCC	4 cut(s)	35, 857, 1767, 1941
BspCNI	CTCAG	4 cut(s)	479, 743, 986, 2087
BspDI	ATCGAT	1 cut(s)	427
BspEI	TCCGGA	1 cut(s)	1295
BspFNI	CGCG	2 cut(s)	193, 2055
BspHI	TCATGA	2 cut(s)	911, 1612
BspLI	GGNNCC	3 cut(s)	137, 1940, 2101
BspPI	GGATC	6 cut(s)	791, 978, 1351, 1899, 2175, 2186
BspTI	CTTAAG	1 cut(s)	438
BspTNI	GGTCTC	1 cut(s)	2015
BsrDI	GCAATG	2 cut(s)	46, 1874
BsrFI	RCCGGY	2 cut(s)	35, 2090
BsrI	ACTGG	5 cut(s)	413, 858, 1225, 1805, 2109
BssAI	RCCGGY	2 cut(s)	35, 2090
BssECI	CCNNGG	6 cut(s)	823, 1201, 1413, 1462, 1936, 2163
BssHII	GCGCGC	1 cut(s)	2053
BssT1I	CCWWGG	3 cut(s)	1201, 1413, 1462
Bst2UI	CCWGG	4 cut(s)	217, 556, 2050, 2164
Bst6I	CTCTTC	2 cut(s)	88, 1726
BstAFI	CTTAAG	1 cut(s)	438
BstAPI	GCANNNNNTGC	1 cut(s)	1524
BstC8I	GCNNGC	8 cut(s)	37, 171, 191, 448, 1112, 1831, 2055, 2240
BstDEI	CTNAG	7 cut(s)	24, 466, 751, 994, 2095, 2156, 2227
BstF5I	GGATG	2 cut(s)	420, 911
BstFNI	CGCG	2 cut(s)	193, 2055
BstHHI	GCGC	2 cut(s)	2055, 2057
BstMAI	GTCTC	3 cut(s)	1111, 1937, 2015
BstMCI	CGRYCG	1 cut(s)	36
BstMWI	GCNNNNNNNGC	3 cut(s)	915, 1524, 2054
BstNI	CCWGG	4 cut(s)	217, 556, 2050, 2164
BstNSI	RCATGY	2 cut(s)	1833, 2242
BstSCI	CCNGG	5 cut(s)	215, 554, 1935, 2048, 2162
BstSFI	CTRYAG	2 cut(s)	974, 2182
BstUI	CGCG	2 cut(s)	193, 2055
BstV1I	GCAGC	7 cut(s)	123, 1083, 1527, 1813, 1967, 2222, 2234
BstX2I	RGATCY	3 cut(s)	326, 783, 2178
BstXI	CCANNNNNNTGG	2 cut(s)	562, 1751
BstYI	RGATCY	3 cut(s)	326, 783, 2178
BstZI	CGGCCG	1 cut(s)	33
Bsu15I	ATCGAT	1 cut(s)	427
BsuI	GTATCC	1 cut(s)	1204
BsuRI	GGCC	4 cut(s)	35, 857, 1767, 1941
BsuTUI	ATCGAT	1 cut(s)	427
BtgZI	GCGATG	2 cut(s)	298, 649
BtsCI	GGATG	2 cut(s)	420, 911
BtsIMutI	CAGTG	4 cut(s)	156, 1027, 1798, 2116
Cac8I	GCNNGC	8 cut(s)	37, 171, 191, 448, 1112, 1831, 2055, 2240
CciI	TCATGA	2 cut(s)	911, 1612
CfoI	GCGC	2 cut(s)	2055, 2057
Cfr10I	RCCGGY	2 cut(s)	35, 2090
Cfr13I	GGNCC	1 cut(s)	1939
ClaI	ATCGAT	1 cut(s)	427
CseI	GACGC	2 cut(s)	240, 925
CsiI	ACCWGGT	1 cut(s)	215
Csp6I	GTAC	5 cut(s)	261, 509, 1132, 1176, 1394
CviAII	CATG	7 cut(s)	912, 1339, 1613, 1830, 1888, 2033, 2239
CviQI	GTAC	5 cut(s)	261, 509, 1132, 1176, 1394
DdeI	CTNAG	7 cut(s)	24, 466, 751, 994, 2095, 2156, 2227
EaeI	YGGCCR	2 cut(s)	33, 855
EagI	CGGCCG	1 cut(s)	33
Eam1104I	CTCTTC	2 cut(s)	88, 1726
EarI	CTCTTC	2 cut(s)	88, 1726
EciI	GGCGGA	3 cut(s)	427, 2035, 2141
Ecl136II	GAGCTC	2 cut(s)	49, 1480
EclXI	CGGCCG	1 cut(s)	33
Eco130I	CCWWGG	3 cut(s)	1201, 1413, 1462
Eco147I	AGGCCT	1 cut(s)	1767
Eco24I	GRGCYC	3 cut(s)	51, 138, 1482
Eco31I	GGTCTC	1 cut(s)	2015
Eco32I	GATATC	1 cut(s)	359
Eco52I	CGGCCG	1 cut(s)	33
Eco53kI	GAGCTC	2 cut(s)	49, 1480
Eco57I	CTGAAG	2 cut(s)	28, 1707
Eco88I	CYCGRG	1 cut(s)	824
EcoICRI	GAGCTC	2 cut(s)	49, 1480
EcoRI	GAATTC	1 cut(s)	829
EcoRII	CCWGG	4 cut(s)	215, 554, 2048, 2162
EcoRV	GATATC	1 cut(s)	359
EcoT14I	CCWWGG	3 cut(s)	1201, 1413, 1462
EcoT22I	ATGCAT	1 cut(s)	1835
EcoT38I	GRGCYC	3 cut(s)	51, 138, 1482
ErhI	CCWWGG	3 cut(s)	1201, 1413, 1462
FaeI	CATG	7 cut(s)	915, 1342, 1616, 1833, 1891, 2036, 2242
FaqI	GGGAC	2 cut(s)	1445, 1905
FatI	CATG	7 cut(s)	911, 1338, 1612, 1829, 1887, 2032, 2238
FauI	CCCGC	1 cut(s)	186
FauNDI	CATATG	1 cut(s)	852
FbaI	TGATCA	1 cut(s)	128
Fnu4HI	GCNGC	8 cut(s)	112, 174, 1072, 1516, 1827, 1981, 2223, 2236
FokI	GGATG	2 cut(s)	427, 918
FriOI	GRGCYC	3 cut(s)	51, 138, 1482
Fsp4HI	GCNGC	8 cut(s)	112, 174, 1072, 1516, 1827, 1981, 2223, 2236
FspBI	CTAG	7 cut(s)	145, 223, 256, 834, 1605, 1984, 2026
GlaI	GCGC	2 cut(s)	2054, 2056
GluI	GCNGC	8 cut(s)	112, 174, 1072, 1516, 1827, 1981, 2223, 2236
GsaI	CCCAGC	1 cut(s)	1385
GsuI	CTGGAG	3 cut(s)	1208, 1822, 2146
HaeIII	GGCC	4 cut(s)	35, 857, 1767, 1941
HapII	CCGG	5 cut(s)	36, 669, 1296, 1936, 2091
HgaI	GACGC	2 cut(s)	240, 925
HhaI	GCGC	2 cut(s)	2055, 2057
Hin1II	CATG	7 cut(s)	915, 1342, 1616, 1833, 1891, 2036, 2242
Hin6I	GCGC	2 cut(s)	2053, 2055
HinP1I	GCGC	2 cut(s)	2053, 2055
HincII	GTYRAC	2 cut(s)	395, 2062
HindII	GTYRAC	2 cut(s)	395, 2062
HinfI	GANTC	6 cut(s)	797, 1301, 1388, 1409, 1616, 2036
HpaI	GTTAAC	2 cut(s)	395, 2062
HpaII	CCGG	5 cut(s)	36, 669, 1296, 1936, 2091
HphI	GGTGA	5 cut(s)	413, 512, 959, 1713, 2162
Hpy166II	GTNNAC	9 cut(s)	244, 253, 261, 395, 421, 1624, 1671, 1679, 2062
Hpy8I	GTNNAC	9 cut(s)	244, 253, 261, 395, 421, 1624, 1671, 1679, 2062
HpyAV	CCTTC	5 cut(s)	297, 368, 772, 1785, 2158
HpyCH4V	TGCA	7 cut(s)	450, 1515, 1527, 1557, 1829, 1833, 2238
HpyF10VI	GCNNNNNNNGC	3 cut(s)	915, 1524, 2054
HpyF3I	CTNAG	7 cut(s)	24, 466, 751, 994, 2095, 2156, 2227
Hsp92II	CATG	7 cut(s)	915, 1342, 1616, 1833, 1891, 2036, 2242
HspAI	GCGC	2 cut(s)	2053, 2055
Kpn2I	TCCGGA	1 cut(s)	1295
KroI	GCCGGC	1 cut(s)	35
KroNI	GCCGGC	1 cut(s)	37
Ksp22I	TGATCA	1 cut(s)	128
KspAI	GTTAAC	2 cut(s)	395, 2062
Lsp1109I	GCAGC	7 cut(s)	123, 1083, 1527, 1813, 1967, 2222, 2234
LweI	GCATC	3 cut(s)	896, 1544, 1694
MabI	ACCWGGT	1 cut(s)	215
MaeI	CTAG	7 cut(s)	145, 223, 256, 834, 1605, 1984, 2026
MaeIII	GTNAC	4 cut(s)	65, 860, 1547, 1817
MfeI	CAATTG	2 cut(s)	1664, 2082
MflI	RGATCY	3 cut(s)	326, 783, 2178
MhlI	GDGCHC	4 cut(s)	51, 59, 138, 1482
MlsI	TGGCCA	1 cut(s)	857
MluNI	TGGCCA	1 cut(s)	857
MlyI	GAGTC	1 cut(s)	1382
MmeI	TCCRAC	2 cut(s)	314, 1932
MnlI	CCTC	8 cut(s)	112, 665, 833, 1649, 1778, 2086, 2090, 2221
Mox20I	TGGCCA	1 cut(s)	857
Mph1103I	ATGCAT	1 cut(s)	1835
MroI	TCCGGA	1 cut(s)	1295
MroNI	GCCGGC	1 cut(s)	35
MroXI	GAANNNNTTC	1 cut(s)	582
MscI	TGGCCA	1 cut(s)	857
Msp20I	TGGCCA	1 cut(s)	857
MspA1I	CMGCKG	1 cut(s)	1980
MspCI	CTTAAG	1 cut(s)	438
MspI	CCGG	5 cut(s)	36, 669, 1296, 1936, 2091
MspR9I	CCNGG	5 cut(s)	217, 556, 1937, 2050, 2164
MunI	CAATTG	2 cut(s)	1664, 2082
MvaI	CCWGG	4 cut(s)	217, 556, 2050, 2164
MvnI	CGCG	2 cut(s)	193, 2055
MwoI	GCNNNNNNNGC	3 cut(s)	915, 1524, 2054
NaeI	GCCGGC	1 cut(s)	37
NciI	CCSGG	1 cut(s)	1937
NdeI	CATATG	1 cut(s)	852
NgoMIV	GCCGGC	1 cut(s)	35
NlaIII	CATG	7 cut(s)	915, 1342, 1616, 1833, 1891, 2036, 2242
NlaIV	GGNNCC	3 cut(s)	137, 1940, 2101
NmuCI	GTSAC	1 cut(s)	860
NsiI	ATGCAT	1 cut(s)	1835
NspI	RCATGY	2 cut(s)	1833, 2242
PaeI	GCATGC	2 cut(s)	1833, 2242
PagI	TCATGA	2 cut(s)	911, 1612
PauI	GCGCGC	1 cut(s)	2053
PceI	AGGCCT	1 cut(s)	1767
PdiI	GCCGGC	1 cut(s)	37
PdmI	GAANNNNTTC	1 cut(s)	582
PfeI	GAWTC	5 cut(s)	797, 1301, 1409, 1616, 2036
PkrI	GCNGC	8 cut(s)	113, 175, 1073, 1517, 1828, 1982, 2224, 2237
PleI	GAGTC	1 cut(s)	1382
PpsI	GAGTC	1 cut(s)	1382
PshBI	ATTAAT	1 cut(s)	1564
PsiI	TTATAA	1 cut(s)	2014
Psp124BI	GAGCTC	2 cut(s)	51, 1482
Psp6I	CCWGG	4 cut(s)	215, 554, 2048, 2162
PspFI	CCCAGC	1 cut(s)	1381
PspGI	CCWGG	4 cut(s)	215, 554, 2048, 2162
PspN4I	GGNNCC	3 cut(s)	137, 1940, 2101
PspPI	GGNCC	1 cut(s)	1939
PsuI	RGATCY	3 cut(s)	326, 783, 2178
PteI	GCGCGC	1 cut(s)	2053
PvuII	CAGCTG	1 cut(s)	1980
RsaI	GTAC	5 cut(s)	262, 510, 1133, 1177, 1395
RsaNI	GTAC	5 cut(s)	261, 509, 1132, 1176, 1394
SacI	GAGCTC	2 cut(s)	51, 1482
SatI	GCNGC	8 cut(s)	112, 174, 1072, 1516, 1827, 1981, 2223, 2236
Sau96I	GGNCC	1 cut(s)	1939
SchI	GAGTC	1 cut(s)	1382
ScrFI	CCNGG	5 cut(s)	217, 556, 1937, 2050, 2164
SduI	GDGCHC	4 cut(s)	51, 59, 138, 1482
SexAI	ACCWGGT	1 cut(s)	215
SfaNI	GCATC	3 cut(s)	896, 1544, 1694
SfcI	CTRYAG	2 cut(s)	974, 2182
SmlI	CTYRAG	3 cut(s)	438, 605, 1882
SmoI	CTYRAG	3 cut(s)	438, 605, 1882
SpeI	ACTAGT	2 cut(s)	144, 255
SphI	GCATGC	2 cut(s)	1833, 2242
SseBI	AGGCCT	1 cut(s)	1767
SsiI	CCGC	6 cut(s)	174, 193, 412, 1114, 2046, 2152
SspI	AATATT	1 cut(s)	572
SspMI	CTAG	7 cut(s)	145, 223, 256, 834, 1605, 1984, 2026
SstI	GAGCTC	2 cut(s)	51, 1482
StuI	AGGCCT	1 cut(s)	1767
StyD4I	CCNGG	5 cut(s)	215, 554, 1935, 2048, 2162
StyI	CCWWGG	3 cut(s)	1201, 1413, 1462
TaqI	TCGA	6 cut(s)	427, 482, 1098, 1180, 1687, 1855
TatI	WGTACW	2 cut(s)	1131, 1175
TauI	GCSGC	1 cut(s)	176
TfiI	GAWTC	5 cut(s)	797, 1301, 1409, 1616, 2036
TscAI	CASTG	4 cut(s)	156, 1034, 1805, 2116
TseFI	GTSAC	1 cut(s)	860
TseI	GCWGC	7 cut(s)	111, 1071, 1515, 1826, 1980, 2222, 2235
Tsp45I	GTSAC	1 cut(s)	860
TspDTI	ATGAA	9 cut(s)	555, 797, 928, 998, 1164, 1233, 1659, 1915, 2049
TspGWI	ACGGA	1 cut(s)	412
TspRI	CASTG	4 cut(s)	156, 1034, 1805, 2116
Vha464I	CTTAAG	1 cut(s)	438
VspI	ATTAAT	1 cut(s)	1564
XapI	RAATTY	4 cut(s)	313, 542, 829, 1647
XceI	RCATGY	2 cut(s)	1833, 2242
XcmI	CCANNNNNNNNNTGG	1 cut(s)	559
XmnI	GAANNNNTTC	1 cut(s)	582
XspI	CTAG	7 cut(s)	145, 223, 256, 834, 1605, 1984, 2026
Zsp2I	ATGCAT	1 cut(s)	1835

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.