Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002790.1

Orthogroup ID

OG0006041

Physical Location & Seq

Genomic Coordinates Reverse (-)

82115 .. 82630

Gene Structure 516 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 516 bp

atgctgcgagcgtccggaatacactgggatcttcgtaaagttgatcagtatgagtgttatgacgaatttgattgggaagtacagtggcaaaaagaaggggattcgttggctcgttatctagtccgaattggtgaaatggtggaatccataaaaattattcaacaggctctcgaaggaattccgggggggccatatgagaatttagaaacccgatattttgatagagaaaggaatccagaatggaatgattttgaatatcgctttattagtaaaaaaccttctcctacatttgaattgccgaaacaagaactttctgtgagagtcgaagctccaaaaggagagtttggggtttttctgataggggatcggagtggatttccttggagatggaaaattcgaccgccgggttttatcaatttgcaaattcttcctcagttagttaaaacaatgaaattggctgatattatgacaatactaggtagtatagatatcattatgggagaagttgattgttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0003959 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005743 GO:0005746 GO:0005747 GO:0006091 GO:0008150 GO:0008152 GO:0009507 GO:0009532 GO:0009534 GO:0009535 GO:0009536 GO:0009570 GO:0009579 GO:0009987 GO:0015979 GO:0015980 GO:0016020 GO:0016491 GO:0016651 GO:0019866 GO:0030964 GO:0031090 GO:0031966 GO:0031967 GO:0031975 GO:0031976 GO:0031984 GO:0032991 GO:0034357 GO:0042651 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044434 GO:0044435 GO:0044436 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0045271 GO:0045333 GO:0055035 GO:0055114 GO:0070469 GO:0098796 GO:0098798 GO:0098800 GO:0098803 GO:1902494 GO:1990204

KEGG Pathways

Metabolic & Signaling

ko00190 ko01100 map00190 map01100

Pfam Domains

Protein Families

Complex1_49kDa Fer4 NADHdh

Protein Analysis

171

Amino Acids

20.09

Weight (kDa)

4.98

Isoelectric Point (pI)

35.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Complex1_49kDa	PF00346	1 - 170	5.6e-56	Respiratory-chain NADH dehydrogenase, 49 Kd subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

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Orthologous Genes (Group: OG0006041)

Species	Orthologous Gene IDs
arabidopsis_thaliana	ATMG00510
fragaria_vesca	FvH4_2g05080 FvH4_c1g00130
pyrus_communis	pycom06g06240 pycom09g13070
rosa_chinensis	RchiOBHm_Chr3g0470811 RchiOBHm_Chr7g0212321 RchiOBHm_MTg0498261
rosa_laevigata	RLG00000000004 RLG00000000028 RLG00000000041 RLG00000000042 RLG00000000104 RLG00000000105 RLG00000000209 RLG00000000357 RLG00000000376 RLG00000000392 RLG00000037096 RLG00000037115
rosa_multiflora	Rmu_sc0002790.1_g000022 Rmu_sc0003825.1_g000002
rosa_roxburghii	Rroxscaffold_2G00119150
rosa_rugosa	Rorug07G0324900 RorugMtG0001100 RorugMtG0003200.1
rosa_wichuraiana	Rw0G023300

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccIII	TCCGGA	1 cut(s)	14
AciI	CCGC	1 cut(s)	401
AclWI	GGATC	2 cut(s)	36, 372
AcsI	RAATTY	5 cut(s)	65, 177, 199, 393, 423
AfaI	GTAC	1 cut(s)	81
AgsI	TTSAA	3 cut(s)	161, 254, 293
AluBI	AGCT	1 cut(s)	329
AluI	AGCT	1 cut(s)	329
AlwI	GGATC	2 cut(s)	36, 372
Aor13HI	TCCGGA	1 cut(s)	14
AoxI	GGCC	1 cut(s)	188
ApeKI	GCWGC	1 cut(s)	4
ApoI	RAATTY	5 cut(s)	65, 177, 199, 393, 423
Asp700I	GAANNNNTTC	1 cut(s)	177
AspS9I	GGNCC	1 cut(s)	188
AsuC2I	CCSGG	2 cut(s)	183, 405
AsuHPI	GGTGA	1 cut(s)	143
BarI	GAAGNNNNNNTAC	2 cut(s)	262, 294
BccI	CCATC	1 cut(s)	381
BclI	TGATCA	1 cut(s)	43
BcnI	CCSGG	2 cut(s)	183, 405
BfaI	CTAG	2 cut(s)	119, 476
BisI	GCNGC	1 cut(s)	5
BlsI	GCNGC	1 cut(s)	6
Bme1390I	CCNGG	2 cut(s)	183, 405
BmgT120I	GGNCC	1 cut(s)	188
BmiI	GGNNCC	1 cut(s)	189
BmrFI	CCNGG	2 cut(s)	183, 405
BmrI	ACTGGG	1 cut(s)	34
BmuI	ACTGGG	1 cut(s)	34
BpuMI	CCSGG	2 cut(s)	183, 405
BsaJI	CCNNGG	2 cut(s)	182, 380
BsaWI	WCCGGW	1 cut(s)	14
Bse1I	ACTGG	1 cut(s)	29
BseAI	TCCGGA	1 cut(s)	14
BseDI	CCNNGG	2 cut(s)	182, 380
BseMII	CTCAG	1 cut(s)	446
BseNI	ACTGG	1 cut(s)	29
Bsh1285I	CGRYCG	1 cut(s)	401
BshFI	GGCC	1 cut(s)	190
BsiEI	CGRYCG	1 cut(s)	401
BsiSI	CCGG	3 cut(s)	15, 182, 404
BsnI	GGCC	1 cut(s)	190
Bsp13I	TCCGGA	1 cut(s)	14
Bsp143I	GATC	3 cut(s)	28, 43, 364
BspACI	CCGC	1 cut(s)	401
BspANI	GGCC	1 cut(s)	190
BspCNI	CTCAG	1 cut(s)	445
BspEI	TCCGGA	1 cut(s)	14
BspLI	GGNNCC	1 cut(s)	189
BspPI	GGATC	2 cut(s)	36, 372
BsrI	ACTGG	1 cut(s)	29
BssECI	CCNNGG	2 cut(s)	182, 380
BssMI	GATC	3 cut(s)	28, 43, 364
BssT1I	CCWWGG	1 cut(s)	380
Bst4CI	ACNGT	1 cut(s)	84
BstC8I	GCNNGC	1 cut(s)	9
BstDEI	CTNAG	1 cut(s)	432
BstKTI	GATC	3 cut(s)	31, 46, 367
BstMBI	GATC	3 cut(s)	28, 43, 364
BstMCI	CGRYCG	1 cut(s)	401
BstSCI	CCNGG	2 cut(s)	181, 403
BstX2I	RGATCY	1 cut(s)	28
BstYI	RGATCY	1 cut(s)	28
BsuRI	GGCC	1 cut(s)	190
BtsIMutI	CAGTG	2 cut(s)	22, 89
Cac8I	GCNNGC	1 cut(s)	9
Cfr13I	GGNCC	1 cut(s)	188
Csp6I	GTAC	1 cut(s)	80
CviJI	RGCY	5 cut(s)	110, 167, 190, 329, 458
CviKI_1	RGCY	5 cut(s)	110, 167, 190, 329, 458
CviQI	GTAC	1 cut(s)	80
DdeI	CTNAG	1 cut(s)	432
DpnI	GATC	3 cut(s)	30, 45, 366
DpnII	GATC	3 cut(s)	28, 43, 364
Eco130I	CCWWGG	1 cut(s)	380
Eco32I	GATATC	1 cut(s)	490
EcoRI	GAATTC	1 cut(s)	177
EcoRV	GATATC	1 cut(s)	490
EcoT14I	CCWWGG	1 cut(s)	380
ErhI	CCWWGG	1 cut(s)	380
FaiI	YATR	8 cut(s)	51, 60, 149, 193, 195, 467, 485, 497
FauNDI	CATATG	1 cut(s)	193
FbaI	TGATCA	1 cut(s)	43
Fnu4HI	GCNGC	1 cut(s)	5
Fsp4HI	GCNGC	1 cut(s)	5
FspBI	CTAG	2 cut(s)	119, 476
GluI	GCNGC	1 cut(s)	5
HaeIII	GGCC	1 cut(s)	190
HapII	CCGG	3 cut(s)	15, 182, 404
HinfI	GANTC	4 cut(s)	101, 143, 232, 321
HpaII	CCGG	3 cut(s)	15, 182, 404
HphI	GGTGA	1 cut(s)	143
Hpy188I	TCNGA	3 cut(s)	125, 357, 369
Hpy188III	TCNNGA	3 cut(s)	15, 170, 236
HpyAV	CCTTC	3 cut(s)	89, 167, 288
HpyCH4III	ACNGT	1 cut(s)	84
HpyCH4V	TGCA	1 cut(s)	421
HpyF3I	CTNAG	1 cut(s)	432
Kpn2I	TCCGGA	1 cut(s)	14
Ksp22I	TGATCA	1 cut(s)	43
Kzo9I	GATC	3 cut(s)	28, 43, 364
LmnI	GCTCC	1 cut(s)	334
LpnPI	CCDG	6 cut(s)	10, 28, 149, 195, 249, 417
MaeI	CTAG	2 cut(s)	119, 476
MalI	GATC	3 cut(s)	30, 45, 366
MboI	GATC	3 cut(s)	28, 43, 364
MboII	GAAGA	2 cut(s)	23, 419
MflI	RGATCY	1 cut(s)	28
MlyI	GAGTC	1 cut(s)	330
MnlI	CCTC	1 cut(s)	441
MroI	TCCGGA	1 cut(s)	14
MroXI	GAANNNNTTC	1 cut(s)	177
MseI	TTAA	1 cut(s)	441
MspI	CCGG	3 cut(s)	15, 182, 404
MspR9I	CCNGG	2 cut(s)	183, 405
NciI	CCSGG	2 cut(s)	183, 405
NdeI	CATATG	1 cut(s)	193
NdeII	GATC	3 cut(s)	28, 43, 364
NlaIV	GGNNCC	1 cut(s)	189
PdmI	GAANNNNTTC	1 cut(s)	177
PfeI	GAWTC	3 cut(s)	101, 143, 232
PkrI	GCNGC	1 cut(s)	6
PleI	GAGTC	1 cut(s)	329
PpsI	GAGTC	1 cut(s)	329
PspN4I	GGNNCC	1 cut(s)	189
PspPI	GGNCC	1 cut(s)	188
PsuI	RGATCY	1 cut(s)	28
RsaI	GTAC	1 cut(s)	81
RsaNI	GTAC	1 cut(s)	80
SaqAI	TTAA	1 cut(s)	441
SatI	GCNGC	1 cut(s)	5
Sau3AI	GATC	3 cut(s)	28, 43, 364
Sau96I	GGNCC	1 cut(s)	188
SchI	GAGTC	1 cut(s)	330
ScrFI	CCNGG	2 cut(s)	183, 405
SetI	ASST	3 cut(s)	280, 331, 481
SsiI	CCGC	1 cut(s)	401
SspMI	CTAG	2 cut(s)	119, 476
StyD4I	CCNGG	2 cut(s)	181, 403
StyI	CCWWGG	1 cut(s)	380
TaaI	ACNGT	1 cut(s)	84
TaqI	TCGA	3 cut(s)	171, 324, 397
TatI	WGTACW	1 cut(s)	79
TfiI	GAWTC	3 cut(s)	101, 143, 232
Tru1I	TTAA	1 cut(s)	441
Tru9I	TTAA	1 cut(s)	441
TscAI	CASTG	2 cut(s)	29, 89
TseI	GCWGC	1 cut(s)	4
TspDTI	ATGAA	1 cut(s)	464
TspRI	CASTG	2 cut(s)	29, 89
XapI	RAATTY	5 cut(s)	65, 177, 199, 393, 423
XmnI	GAANNNNTTC	1 cut(s)	177
XspI	CTAG	2 cut(s)	119, 476

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.