Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002883.1

Orthogroup ID

OG0005906

Physical Location & Seq

Genomic Coordinates Forward (+)

18439 .. 20135

Gene Structure 1697 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1302 bp

atggcttcaacaactgaacccaaaggagaaatccaagaagtatctgaagatgtttctactgaaactctcaaatacaagacttgggtattgaaggtctccattcactgtggtgcttgcagcaagaaggtcaccaaaatcttgaagaaaattgatggggtttacattacaagggtcgactatttgcagcaaaaagtgacggtcattgggaatgtggaggctgaaactttgatcaagacactgaccaagaaaacaacgaaacacgttgagttgttgtggcctgacccgaaagacaattccaaagacaagaaacagagtaaacccaaaggcaatgagaaacagagtgaaatctccgaggaagcaaaagcaaaccacggcggcggcggagataagaaaaagggtaaagagccggtgaaggatgaagttgttgaagtgcaagagtctggtgggggtaagaagaactttgaagttggtagttctagcaatagtaaaggtgttgaggaaggtaatgttgttaaaccacatgagggtggcggcggtggtggggaaggaaaattaaaggaggcacagactggcagcttgcccagccagtcacagccggcggcggctgaaaagcaaagtgggggtgttgagagtgaagctgtgggggagaaaagtggaggtggtgctggcaatggcaatggtggtgggggtgggggtaaaaagaaaaagggtaaggggcagaacgggaatcacaatgtcaatgctgctgaaggtgaactggttgtcaatgcaccaagcaccggttcaccaccggttcagcccgggcctcagcctcagcctcagccttatgggccgcctaatgttcagagccaagtgcccaatgtgcagaggcctattccagttccagcctctcatggcccgccacctcagcagcagttgtctgagcacccgtactacccaaggcagcagcagcagtatgagcatccttacccaaggcagcagcactatgagcacccttacccaatgcagcagcaacagcactttactcctgtgcatgcgatgaactacaatgcagcacaccccagcattagctacggtgcggctcgctatgctccacaacctgtttattctcagtcgcacacttatgcaaattggagtttggggaatgaggttgatccaccagcctatgatttggacaaccttccgcctgcgccgccgttccatcctccaccggcctatccaccacatccttacaactcatctgattccgatacctatgcattcttcagtgatgaaaatccaaatgggtgcggtatcatgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006811 GO:0006812 GO:0006873 GO:0006875 GO:0008150 GO:0009987 GO:0019725 GO:0030001 GO:0030003 GO:0042592 GO:0043167 GO:0043169 GO:0044424 GO:0044464 GO:0046872 GO:0046914 GO:0046916 GO:0048878 GO:0050801 GO:0051179 GO:0051234 GO:0055065 GO:0055076 GO:0055080 GO:0055082 GO:0065007 GO:0065008 GO:0098771

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HMA

Protein Analysis

433

Amino Acids

46.44

Weight (kDa)

6.77

Isoelectric Point (pI)

51.6

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
HMA	PF00403	30 - 82	4.3e-11	Heavy-metal-associated domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005906)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g09921 FvH4_6g06500
malus_domestica	MD04G1201300.v1.1 MD12G1213700.v1.1
prunus_persica	Prupe.6G321400_v2.0.a1 Prupe.6G321400_v2.0.a1
pyrus_communis	pycom04g17730 pycom12g19960
rosa_chinensis	RchiOBHm_Chr3g0455651
rosa_laevigata	RLG00000000137 RLG00000000144 RLG00000000152 RLG00000000192 RLG00000000428 RLG00000000490 RLG00000025343
rosa_multiflora	Rmu_sc0002883.1_g000006
rosa_roxburghii	Rroxscaffold_6G00423630 Rroxscaffold_6G00424130
rosa_rugosa	Rorug03G0009000
rosa_samantha	Rh3AG068500 Rh3BG071000 Rh3CG069300 Rh3DG070900 Rh5BG485600 Rh6CG178600 Rh6DG170400
rosa_wichuraiana	Rw3G005490

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	174
AclWI	GGATC	1 cut(s)	1148
AcuI	CTGAAG	3 cut(s)	66, 768, 1249
AfaI	GTAC	1 cut(s)	932
AfiI	CCNNNNNNNGG	2 cut(s)	524, 779
AflIII	ACRYGT	1 cut(s)	259
AgeI	ACCGGT	2 cut(s)	779, 790
AgsI	TTSAA	5 cut(s)	9, 91, 142, 428, 464
AjuI	GAANNNNNNNTTGG	2 cut(s)	766, 798
AleI	CACNNNNGTG	1 cut(s)	108
AluBI	AGCT	3 cut(s)	576, 638, 1071
AluI	AGCT	3 cut(s)	576, 638, 1071
Alw21I	GWGCWC	2 cut(s)	927, 993
Alw26I	GTCTC	1 cut(s)	100
AlwI	GGATC	1 cut(s)	1148
Ama87I	CYCGRG	1 cut(s)	800
AoxI	GGCC	6 cut(s)	275, 803, 830, 869, 895, 1212
AsiGI	ACCGGT	2 cut(s)	779, 790
AspLEI	GCGC	1 cut(s)	1192
AspS9I	GGNCC	3 cut(s)	803, 830, 896
AsuC2I	CCSGG	2 cut(s)	801, 802
AsuHPI	GGTGA	4 cut(s)	121, 421, 764, 777
AvaI	CYCGRG	1 cut(s)	800
BaeGI	GKGCMC	1 cut(s)	858
Bbv12I	GWGCWC	2 cut(s)	927, 993
BbvCI	CCTCAGC	4 cut(s)	807, 813, 819, 906
BccI	CCATC	2 cut(s)	146, 1209
BceAI	ACGGC	2 cut(s)	388, 1180
BcgI	CGANNNNNNTGC	2 cut(s)	1238, 1272
BclI	TGATCA	1 cut(s)	228
BcnI	CCSGG	2 cut(s)	801, 802
BcoDI	GTCTC	1 cut(s)	100
BfaI	CTAG	1 cut(s)	477
BglI	GCCNNNNNGGC	1 cut(s)	829
Bme1390I	CCNGG	2 cut(s)	801, 802
BmeT110I	CYCGRG	1 cut(s)	800
BmgT120I	GGNCC	3 cut(s)	803, 830, 896
BmrFI	CCNGG	2 cut(s)	801, 802
BmsI	GCATC	1 cut(s)	970
Bpu10I	CCTNAGC	4 cut(s)	807, 813, 819, 906
BpuMI	CCSGG	2 cut(s)	801, 802
BsaBI	GATNNNNATC	1 cut(s)	1275
BsaI	GGTCTC	1 cut(s)	100
BsaJI	CCNNGG	5 cut(s)	351, 370, 800, 938, 971
BsaWI	WCCGGW	2 cut(s)	779, 790
Bsc4I	CCNNNNNNNGG	2 cut(s)	524, 779
Bse118I	RCCGGY	5 cut(s)	406, 595, 779, 790, 1210
Bse1I	ACTGG	4 cut(s)	574, 586, 762, 878
Bse3DI	GCAATG	3 cut(s)	334, 676, 682
Bse8I	GATNNNNATC	1 cut(s)	1275
BseDI	CCNNGG	5 cut(s)	351, 370, 800, 938, 971
BseGI	GGATG	4 cut(s)	421, 961, 1201, 1225
BseJI	GATNNNNATC	1 cut(s)	1275
BseLI	CCNNNNNNNGG	2 cut(s)	524, 779
BseMI	GCAATG	3 cut(s)	334, 676, 682
BseMII	CTCAG	6 cut(s)	821, 827, 833, 912, 920, 1124
BseNI	ACTGG	4 cut(s)	574, 586, 762, 878
BseSI	GKGCMC	1 cut(s)	858
BseYI	CCCAGC	2 cut(s)	581, 1061
BsgI	GTGCAG	1 cut(s)	884
BshFI	GGCC	6 cut(s)	277, 805, 832, 871, 897, 1214
BshTI	ACCGGT	2 cut(s)	779, 790
BsiHKAI	GWGCWC	2 cut(s)	927, 993
BsiHKCI	CYCGRG	1 cut(s)	800
BsiSI	CCGG	6 cut(s)	407, 596, 780, 791, 801, 1211
BslI	CCNNNNNNNGG	2 cut(s)	524, 779
BsmAI	GTCTC	1 cut(s)	100
BsmI	GAATGC	1 cut(s)	1259
BsnI	GGCC	6 cut(s)	277, 805, 832, 871, 897, 1214
Bso31I	GGTCTC	1 cut(s)	100
BsoBI	CYCGRG	1 cut(s)	800
Bsp1286I	GDGCHC	3 cut(s)	858, 927, 993
Bsp143I	GATC	2 cut(s)	228, 1153
BspANI	GGCC	6 cut(s)	277, 805, 832, 871, 897, 1214
BspCNI	CTCAG	6 cut(s)	820, 826, 832, 913, 919, 1123
BspPI	GGATC	1 cut(s)	1148
BspTNI	GGTCTC	1 cut(s)	100
BsrDI	GCAATG	3 cut(s)	334, 676, 682
BsrFI	RCCGGY	5 cut(s)	406, 595, 779, 790, 1210
BsrI	ACTGG	4 cut(s)	574, 586, 762, 878
BssAI	RCCGGY	5 cut(s)	406, 595, 779, 790, 1210
BssECI	CCNNGG	5 cut(s)	351, 370, 800, 938, 971
BssMI	GATC	2 cut(s)	228, 1153
BssT1I	CCWWGG	2 cut(s)	938, 971
Bst4CI	ACNGT	3 cut(s)	107, 199, 1076
BstC8I	GCNNGC	8 cut(s)	115, 578, 597, 667, 899, 1035, 1084, 1188
BstDEI	CTNAG	6 cut(s)	807, 813, 819, 906, 921, 1110
BstDSI	CCRYGG	1 cut(s)	370
BstEII	GGTNACC	1 cut(s)	127
BstF5I	GGATG	4 cut(s)	421, 961, 1201, 1225
BstHHI	GCGC	1 cut(s)	1192
BstKTI	GATC	2 cut(s)	231, 1156
BstMAI	GTCTC	1 cut(s)	100
BstMBI	GATC	2 cut(s)	228, 1153
BstNSI	RCATGY	1 cut(s)	1037
BstPI	GGTNACC	1 cut(s)	127
BstSCI	CCNGG	2 cut(s)	799, 800
BstSLI	GKGCMC	1 cut(s)	858
BsuRI	GGCC	6 cut(s)	277, 805, 832, 871, 897, 1214
BtgI	CCRYGG	1 cut(s)	370
BtgZI	GCGATG	1 cut(s)	1052
BtsCI	GGATG	4 cut(s)	421, 961, 1201, 1225
BtsIMutI	CAGTG	3 cut(s)	103, 236, 1273
Cac8I	GCNNGC	8 cut(s)	115, 578, 597, 667, 899, 1035, 1084, 1188
CfoI	GCGC	1 cut(s)	1192
Cfr10I	RCCGGY	5 cut(s)	406, 595, 779, 790, 1210
Cfr13I	GGNCC	3 cut(s)	803, 830, 896
Cfr9I	CCCGGG	1 cut(s)	800
Csp6I	GTAC	1 cut(s)	931
CspAI	ACCGGT	2 cut(s)	779, 790
CspCI	CAANNNNNGTGG	2 cut(s)	664, 699
CviAII	CATG	4 cut(s)	521, 893, 1034, 1297
CviQI	GTAC	1 cut(s)	931
DdeI	CTNAG	6 cut(s)	807, 813, 819, 906, 921, 1110
DpnI	GATC	2 cut(s)	230, 1155
DpnII	GATC	2 cut(s)	228, 1153
EciI	GGCGGA	2 cut(s)	396, 1173
Eco130I	CCWWGG	2 cut(s)	938, 971
Eco147I	AGGCCT	1 cut(s)	871
Eco31I	GGTCTC	1 cut(s)	100
Eco57I	CTGAAG	3 cut(s)	66, 768, 1249
Eco88I	CYCGRG	1 cut(s)	800
Eco91I	GGTNACC	1 cut(s)	127
EcoO65I	GGTNACC	1 cut(s)	127
EcoT14I	CCWWGG	2 cut(s)	938, 971
EcoT22I	ATGCAT	1 cut(s)	1261
ErhI	CCWWGG	2 cut(s)	938, 971
FaeI	CATG	4 cut(s)	524, 896, 1037, 1300
FalI	AAGNNNNNCTT	2 cut(s)	443, 475
FatI	CATG	4 cut(s)	520, 892, 1033, 1296
FauI	CCCGC	1 cut(s)	906
FbaI	TGATCA	1 cut(s)	228
FblI	GTMKAC	1 cut(s)	174
FokI	GGATG	4 cut(s)	428, 948, 1188, 1212
FspBI	CTAG	1 cut(s)	477
GlaI	GCGC	1 cut(s)	1191
GsaI	CCCAGC	2 cut(s)	585, 1065
HaeIII	GGCC	6 cut(s)	277, 805, 832, 871, 897, 1214
HapII	CCGG	6 cut(s)	407, 596, 780, 791, 801, 1211
HhaI	GCGC	1 cut(s)	1192
Hin1II	CATG	4 cut(s)	524, 896, 1037, 1300
Hin6I	GCGC	1 cut(s)	1190
HinP1I	GCGC	1 cut(s)	1190
HincII	GTYRAC	1 cut(s)	175
HindII	GTYRAC	1 cut(s)	175
HinfI	GANTC	3 cut(s)	437, 727, 1244
HpaII	CCGG	6 cut(s)	407, 596, 780, 791, 801, 1211
HphI	GGTGA	4 cut(s)	121, 421, 764, 777
Hpy166II	GTNNAC	5 cut(s)	160, 175, 317, 755, 785
Hpy188I	TCNGA	6 cut(s)	46, 352, 846, 922, 1243, 1249
Hpy188III	TCNNGA	2 cut(s)	139, 232
Hpy8I	GTNNAC	5 cut(s)	160, 175, 317, 755, 785
HpyAV	CCTTC	7 cut(s)	85, 118, 406, 494, 539, 743, 1190
HpyCH4III	ACNGT	3 cut(s)	107, 199, 1076
HpyCH4IV	ACGT	1 cut(s)	261
HpyF3I	CTNAG	6 cut(s)	807, 813, 819, 906, 921, 1110
HpySE526I	ACGT	1 cut(s)	261
Hsp92II	CATG	4 cut(s)	524, 896, 1037, 1300
HspAI	GCGC	1 cut(s)	1190
KroI	GCCGGC	1 cut(s)	595
KroNI	GCCGGC	1 cut(s)	597
Ksp22I	TGATCA	1 cut(s)	228
Kzo9I	GATC	2 cut(s)	228, 1153
LmnI	GCTCC	1 cut(s)	1096
LweI	GCATC	1 cut(s)	970
MaeI	CTAG	1 cut(s)	477
MaeII	ACGT	1 cut(s)	261
MaeIII	GTNAC	3 cut(s)	127, 193, 588
MalI	GATC	2 cut(s)	230, 1155
MboI	GATC	2 cut(s)	228, 1153
MboII	GAAGA	4 cut(s)	59, 154, 466, 1255
MhlI	GDGCHC	3 cut(s)	858, 927, 993
MluCI	AATT	4 cut(s)	147, 292, 551, 1129
MlyI	GAGTC	1 cut(s)	446
Mph1103I	ATGCAT	1 cut(s)	1261
MroNI	GCCGGC	1 cut(s)	595
MseI	TTAA	2 cut(s)	513, 554
MslI	CAYNNNNRTG	3 cut(s)	108, 525, 1122
MspI	CCGG	6 cut(s)	407, 596, 780, 791, 801, 1211
MspR9I	CCNGG	2 cut(s)	801, 802
Mva1269I	GAATGC	1 cut(s)	1259
NaeI	GCCGGC	1 cut(s)	597
NciI	CCSGG	2 cut(s)	801, 802
NdeII	GATC	2 cut(s)	228, 1153
NgoMIV	GCCGGC	1 cut(s)	595
NlaIII	CATG	4 cut(s)	524, 896, 1037, 1300
NmuCI	GTSAC	3 cut(s)	127, 193, 588
NsiI	ATGCAT	1 cut(s)	1261
NspI	RCATGY	1 cut(s)	1037
OliI	CACNNNNGTG	1 cut(s)	108
PaeI	GCATGC	1 cut(s)	1037
PceI	AGGCCT	1 cut(s)	871
PctI	GAATGC	1 cut(s)	1259
PdiI	GCCGGC	1 cut(s)	597
PfeI	GAWTC	2 cut(s)	727, 1244
PinAI	ACCGGT	2 cut(s)	779, 790
PleI	GAGTC	1 cut(s)	445
PpsI	GAGTC	1 cut(s)	445
PspEI	GGTNACC	1 cut(s)	127
PspFI	CCCAGC	2 cut(s)	581, 1061
PspPI	GGNCC	3 cut(s)	803, 830, 896
RsaI	GTAC	1 cut(s)	932
RsaNI	GTAC	1 cut(s)	931
RseI	CAYNNNNRTG	3 cut(s)	108, 525, 1122
SalI	GTCGAC	1 cut(s)	173
SaqAI	TTAA	2 cut(s)	513, 554
Sau3AI	GATC	2 cut(s)	228, 1153
Sau96I	GGNCC	3 cut(s)	803, 830, 896
SchI	GAGTC	1 cut(s)	446
ScrFI	CCNGG	2 cut(s)	801, 802
SduI	GDGCHC	3 cut(s)	858, 927, 993
SfaNI	GCATC	1 cut(s)	970
SmaI	CCCGGG	1 cut(s)	802
SmiMI	CAYNNNNRTG	3 cut(s)	108, 525, 1122
SphI	GCATGC	1 cut(s)	1037
SrfI	GCCCGGGC	1 cut(s)	802
Sse9I	AATT	4 cut(s)	147, 292, 551, 1129
SseBI	AGGCCT	1 cut(s)	871
SspMI	CTAG	1 cut(s)	477
StuI	AGGCCT	1 cut(s)	871
StyD4I	CCNGG	2 cut(s)	799, 800
StyI	CCWWGG	2 cut(s)	938, 971
TaaI	ACNGT	3 cut(s)	107, 199, 1076
TaiI	ACGT	1 cut(s)	264
TaqI	TCGA	1 cut(s)	174
TasI	AATT	4 cut(s)	147, 292, 551, 1129
TauI	GCSGC	8 cut(s)	378, 381, 534, 602, 605, 835, 1082, 1195
TfiI	GAWTC	2 cut(s)	727, 1244
Tru1I	TTAA	2 cut(s)	513, 554
Tru9I	TTAA	2 cut(s)	513, 554
TscAI	CASTG	3 cut(s)	110, 243, 1273
TseFI	GTSAC	3 cut(s)	127, 193, 588
Tsp45I	GTSAC	3 cut(s)	127, 193, 588
TspDTI	ATGAA	3 cut(s)	432, 1055, 1287
TspMI	CCCGGG	1 cut(s)	800
TspRI	CASTG	3 cut(s)	110, 243, 1273
XceI	RCATGY	1 cut(s)	1037
XmaI	CCCGGG	1 cut(s)	800
XmiI	GTMKAC	1 cut(s)	174
XspI	CTAG	1 cut(s)	477
Zsp2I	ATGCAT	1 cut(s)	1261

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.