Rmu_sc0002895.1_g000015

Mitochondrial glycoprotein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0002895.1
OG0011519
Physical Location & Seq
Reverse (-)
72066 .. 73493
1428 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 522 bp
atgccggcgaagccttatttgggacccgatttcagggatgtgaatgaggagattcaacagaagcttcgtggttatttagatgcaaggggagtaaatgatgagctttctttgttcttgcatcagtatatgatgaacaaggatagaatagaacttatccgatggttggggaatctcaagttggctcggaggatttccaggcggcgacggcggcgcaaggcttgcaagagggaggccggaggcatctcagactgttctgggcagcgttcgaggtcgaaggaggtcggggttgcaggttctgggcagcaacccgacctgcaactgcaggttttctgggtagcgctgcaacgatgtcgccggcaactccaccgactgcagaccacttcgcccgacccttggcgcccttccggcaacccccgcagctctgttgcgccccaagcagagctgcagcagcgccgtcggtactttagcgaaagtgcggacgtcctctttagaacgcctgtgtgtgtgtataaaggggtttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464
KEGG Pathways
Metabolic & Signaling
ko05168 map05168
Pfam Domains
Protein Families
MAM33

Protein Analysis

173

Amino Acids

20.11

Weight (kDa)

10.7

Isoelectric Point (pI)

87.29

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
MAM33 PF02330 4 - 59 1.2e-14 Mitochondrial glycoprotein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 483
Acc36I ACCTGC 3 cut(s) 281, 313, 321
AccB1I GGYRCC 1 cut(s) 396
AciI CCGC 4 cut(s) 199, 208, 415, 476
AcyI GRCGYC 2 cut(s) 397, 480
AfaI GTAC 1 cut(s) 461
AfeI AGCGCT 1 cut(s) 339
AfiI CCNNNNNNNGG 4 cut(s) 20, 33, 163, 393
AgsI TTSAA 1 cut(s) 56
AjnI CCWGG 1 cut(s) 194
AjuI GAANNNNNNNTTGG 3 cut(s) 34, 161, 193
AluBI AGCT 4 cut(s) 64, 103, 420, 442
AluI AGCT 4 cut(s) 64, 103, 420, 442
AlwNI CAGNNNCTG 1 cut(s) 296
Aor51HI AGCGCT 1 cut(s) 339
AoxI GGCC 1 cut(s) 231
ApeKI GCWGC 7 cut(s) 259, 301, 340, 417, 442, 445, 448
AspLEI GCGC 5 cut(s) 213, 340, 399, 430, 453
AspS9I GGNCC 1 cut(s) 23
AvaII GGWCC 1 cut(s) 23
BanI GGYRCC 1 cut(s) 396
BbvI GCAGC 7 cut(s) 271, 313, 327, 429, 429, 457, 460
BccI CCATC 1 cut(s) 153
BceAI ACGGC 2 cut(s) 221, 438
BcgI CGANNNNNNTGC 4 cut(s) 332, 366, 437, 471
BciT130I CCWGG 1 cut(s) 196
BfmI CTRYAG 3 cut(s) 320, 371, 443
BfoI RGCGCY 3 cut(s) 341, 400, 454
BfuAI ACCTGC 3 cut(s) 281, 313, 321
BglI GCCNNNNNGGC 1 cut(s) 405
BisI GCNGC 9 cut(s) 200, 209, 260, 302, 341, 418, 443, 446, 449
BlsI GCNGC 9 cut(s) 201, 210, 261, 303, 342, 419, 444, 447, 450
Bme1390I CCNGG 1 cut(s) 196
Bme18I GGWCC 1 cut(s) 23
BmgT120I GGNCC 1 cut(s) 23
BmiI GGNNCC 3 cut(s) 24, 25, 398
BmrFI CCNGG 1 cut(s) 196
BmsI GCATC 3 cut(s) 70, 127, 249
BpuEI CTTGAG 1 cut(s) 158
BsaHI GRCGYC 2 cut(s) 397, 480
BsaJI CCNNGG 1 cut(s) 392
Bsc4I CCNNNNNNNGG 4 cut(s) 20, 33, 163, 393
Bse118I RCCGGY 2 cut(s) 4, 354
BseBI CCWGG 1 cut(s) 196
BseDI CCNNGG 1 cut(s) 392
BseGI GGATG 1 cut(s) 43
BseLI CCNNNNNNNGG 4 cut(s) 20, 33, 163, 393
BseMII CTCAG 1 cut(s) 258
BseRI GAGGAG 1 cut(s) 62
BseXI GCAGC 7 cut(s) 271, 313, 327, 429, 429, 457, 460
BshFI GGCC 1 cut(s) 233
BshNI GGYRCC 1 cut(s) 396
BsiSI CCGG 4 cut(s) 5, 234, 355, 405
BslFI GGGAC 1 cut(s) 36
BslI CCNNNNNNNGG 4 cut(s) 20, 33, 163, 393
BsmFI GGGAC 1 cut(s) 36
BsnI GGCC 1 cut(s) 233
BspACI CCGC 4 cut(s) 199, 208, 415, 476
BspANI GGCC 1 cut(s) 233
BspCNI CTCAG 1 cut(s) 257
BspLI GGNNCC 3 cut(s) 24, 25, 398
BspMAI CTGCAG 3 cut(s) 324, 375, 447
BspMI ACCTGC 3 cut(s) 281, 313, 321
BspT107I GGYRCC 1 cut(s) 396
BsrFI RCCGGY 2 cut(s) 4, 354
BssAI RCCGGY 2 cut(s) 4, 354
BssECI CCNNGG 1 cut(s) 392
BssNI GRCGYC 2 cut(s) 397, 480
BssT1I CCWWGG 1 cut(s) 392
Bst2UI CCWGG 1 cut(s) 196
Bst4CI ACNGT 1 cut(s) 251
BstACI GRCGYC 2 cut(s) 397, 480
BstAPI GCANNNNNTGC 1 cut(s) 219
BstC8I GCNNGC 3 cut(s) 6, 220, 356
BstDEI CTNAG 1 cut(s) 244
BstF5I GGATG 1 cut(s) 43
BstH2I RGCGCY 3 cut(s) 341, 400, 454
BstHHI GCGC 5 cut(s) 213, 340, 399, 430, 453
BstMWI GCNNNNNNNGC 8 cut(s) 10, 205, 208, 219, 405, 414, 434, 448
BstNI CCWGG 1 cut(s) 196
BstSCI CCNGG 1 cut(s) 194
BstSFI CTRYAG 3 cut(s) 320, 371, 443
BstV1I GCAGC 7 cut(s) 271, 313, 327, 429, 429, 457, 460
BsuRI GGCC 1 cut(s) 233
BtsCI GGATG 1 cut(s) 43
BveI ACCTGC 3 cut(s) 281, 313, 321
Cac8I GCNNGC 3 cut(s) 6, 220, 356
CaiI CAGNNNCTG 1 cut(s) 296
CfoI GCGC 5 cut(s) 213, 340, 399, 430, 453
Cfr10I RCCGGY 2 cut(s) 4, 354
Cfr13I GGNCC 1 cut(s) 23
Csp6I GTAC 1 cut(s) 460
CviJI RGCY 8 cut(s) 13, 64, 103, 182, 218, 233, 420, 442
CviKI_1 RGCY 8 cut(s) 13, 64, 103, 182, 218, 233, 420, 442
CviQI GTAC 1 cut(s) 460
DdeI CTNAG 1 cut(s) 244
DinI GGCGCC 1 cut(s) 398
Eco130I CCWWGG 1 cut(s) 392
Eco47I GGWCC 1 cut(s) 23
Eco47III AGCGCT 1 cut(s) 339
EcoO109I RGGNCCY 1 cut(s) 23
EcoRII CCWGG 1 cut(s) 194
EcoT14I CCWWGG 1 cut(s) 392
EgeI GGCGCC 1 cut(s) 398
EheI GGCGCC 1 cut(s) 398
ErhI CCWWGG 1 cut(s) 392
FaiI YATR 3 cut(s) 126, 128, 510
FaqI GGGAC 1 cut(s) 36
FauI CCCGC 1 cut(s) 422
Fnu4HI GCNGC 9 cut(s) 200, 209, 260, 302, 341, 418, 443, 446, 449
FokI GGATG 1 cut(s) 50
Fsp4HI GCNGC 9 cut(s) 200, 209, 260, 302, 341, 418, 443, 446, 449
GlaI GCGC 5 cut(s) 212, 339, 398, 429, 452
GluI GCNGC 9 cut(s) 200, 209, 260, 302, 341, 418, 443, 446, 449
HaeII RGCGCY 3 cut(s) 341, 400, 454
HaeIII GGCC 1 cut(s) 233
HapII CCGG 4 cut(s) 5, 234, 355, 405
HhaI GCGC 5 cut(s) 213, 340, 399, 430, 453
Hin1I GRCGYC 2 cut(s) 397, 480
Hin6I GCGC 5 cut(s) 211, 338, 397, 428, 451
HinP1I GCGC 5 cut(s) 211, 338, 397, 428, 451
HindIII AAGCTT 1 cut(s) 62
HinfI GANTC 2 cut(s) 52, 169
HpaII CCGG 4 cut(s) 5, 234, 355, 405
Hpy188I TCNGA 3 cut(s) 158, 186, 247
Hpy99I CGWCG 2 cut(s) 207, 459
HpyAV CCTTC 2 cut(s) 268, 411
HpyCH4III ACNGT 1 cut(s) 251
HpyCH4IV ACGT 1 cut(s) 480
HpyCH4V TGCA 9 cut(s) 83, 118, 222, 290, 316, 322, 343, 373, 445
HpyF10VI GCNNNNNNNGC 8 cut(s) 10, 205, 208, 219, 405, 414, 434, 448
HpyF3I CTNAG 1 cut(s) 244
HpySE526I ACGT 1 cut(s) 480
Hsp92I GRCGYC 2 cut(s) 397, 480
HspAI GCGC 5 cut(s) 211, 338, 397, 428, 451
KasI GGCGCC 1 cut(s) 396
KflI GGGWCCC 1 cut(s) 23
KroI GCCGGC 2 cut(s) 4, 354
KroNI GCCGGC 2 cut(s) 6, 356
Lsp1109I GCAGC 7 cut(s) 271, 313, 327, 429, 429, 457, 460
LweI GCATC 3 cut(s) 70, 127, 249
MaeII ACGT 1 cut(s) 480
Mly113I GGCGCC 1 cut(s) 397
MnlI CCTC 8 cut(s) 40, 180, 219, 223, 230, 261, 271, 494
MroNI GCCGGC 2 cut(s) 4, 354
MseI TTAA 1 cut(s) 520
MspI CCGG 4 cut(s) 5, 234, 355, 405
MspR9I CCNGG 1 cut(s) 196
MvaI CCWGG 1 cut(s) 196
MwoI GCNNNNNNNGC 8 cut(s) 10, 205, 208, 219, 405, 414, 434, 448
NaeI GCCGGC 2 cut(s) 6, 356
NarI GGCGCC 1 cut(s) 397
NgoMIV GCCGGC 2 cut(s) 4, 354
NlaIV GGNNCC 3 cut(s) 24, 25, 398
PdiI GCCGGC 2 cut(s) 6, 356
PfeI GAWTC 2 cut(s) 52, 169
PkrI GCNGC 9 cut(s) 201, 210, 261, 303, 342, 419, 444, 447, 450
PluTI GGCGCC 1 cut(s) 400
PpuMI RGGWCCY 1 cut(s) 23
Psp5II RGGWCCY 1 cut(s) 23
Psp6I CCWGG 1 cut(s) 194
PspGI CCWGG 1 cut(s) 194
PspN4I GGNNCC 3 cut(s) 24, 25, 398
PspPI GGNCC 1 cut(s) 23
PspPPI RGGWCCY 1 cut(s) 23
PstI CTGCAG 3 cut(s) 324, 375, 447
PstNI CAGNNNCTG 1 cut(s) 296
RsaI GTAC 1 cut(s) 461
RsaNI GTAC 1 cut(s) 460
SaqAI TTAA 1 cut(s) 520
SatI GCNGC 9 cut(s) 200, 209, 260, 302, 341, 418, 443, 446, 449
Sau96I GGNCC 1 cut(s) 23
ScrFI CCNGG 1 cut(s) 196
SfaNI GCATC 3 cut(s) 70, 127, 249
SfcI CTRYAG 3 cut(s) 320, 371, 443
SfoI GGCGCC 1 cut(s) 398
SinI GGWCC 1 cut(s) 23
SmlI CTYRAG 1 cut(s) 173
SmoI CTYRAG 1 cut(s) 173
SsiI CCGC 4 cut(s) 199, 208, 415, 476
SspDI GGCGCC 1 cut(s) 396
StyD4I CCNGG 1 cut(s) 194
StyI CCWWGG 1 cut(s) 392
TaaI ACNGT 1 cut(s) 251
TaiI ACGT 1 cut(s) 483
TaqI TCGA 2 cut(s) 266, 272
TauI GCSGC 2 cut(s) 202, 211
TfiI GAWTC 2 cut(s) 52, 169
Tru1I TTAA 1 cut(s) 520
Tru9I TTAA 1 cut(s) 520
TseI GCWGC 7 cut(s) 259, 301, 340, 417, 442, 445, 448
TspDTI ATGAA 1 cut(s) 146
VpaK11BI GGWCC 1 cut(s) 23
ZraI GACGTC 1 cut(s) 481
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.