Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0002923.1

Orthogroup ID

OG0003547

Physical Location & Seq

Genomic Coordinates Reverse (-)

214334 .. 216306

Gene Structure 1973 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 606 bp

atgctggctggtggaaagttgatggatgaggctaatagaaccactgtggttaagaataatcctgccgccttgcttgctttatgctggtattgggctactgatggattgggatccaaggatatggttgttcttccttacaaggacagcctattattatttagtcggtatttgcagcagttggtcatggaatctattgggaaagaatttgaccttgatggtaatcgggtgaatcaaggacttacagtgtacggaaacaaagggagcacggatcagcatgcatacatccaacaactgagagatggcgtgcacaatttctttgtgacattcattgaagtactacgagataggcctcctggtcatgattgggagcttgaaccaggtgtcacatgtggtgactatctatttggaatgctacaggttagattcatcacattaaccaatgaagtagccgatcggtgccacgctgctgaagatattgaaatgatgtacaagatcatcgctcacatggcggcaaatgacagagctcttattgctgaaggcagttgcggttcaccacggagtgtcaaagttttcctcggcgagtgtaatgtggaggcattatattga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0004347 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0005975 GO:0005976 GO:0005982 GO:0006073 GO:0008150 GO:0008152 GO:0009507 GO:0009526 GO:0009532 GO:0009536 GO:0009570 GO:0009909 GO:0009911 GO:0009941 GO:0009987 GO:0016853 GO:0016860 GO:0016861 GO:0031967 GO:0031975 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044042 GO:0044237 GO:0044238 GO:0044260 GO:0044262 GO:0044264 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048518 GO:0048580 GO:0048582 GO:0048831 GO:0050789 GO:0050793 GO:0051094 GO:0051239 GO:0051240 GO:0065007 GO:0071704 GO:2000026 GO:2000241 GO:2000243

KEGG Pathways

Metabolic & Signaling

ko00010 ko00030 ko00500 ko00520 ko01100 ko01110 ko01120 ko01130 ko01200 map00010 map00030 map00500 map00520 map01100 map01110 map01120 map01130 map01200

Pfam Domains

Protein Families

PGI

Protein Analysis

201

Amino Acids

22.49

Weight (kDa)

5.07

Isoelectric Point (pI)

34.79

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PGI	PF00342	1 - 114	1e-17	Phosphoglucose isomerase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003547)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT4G24620 AT4G24620
fragaria_vesca	FvH4_5g35680 FvH4_5g35680
malus_domestica	MD08G1194100.v1.1 MD15G1382200.v1.1
prunus_persica	Prupe.1G528400_v2.0.a1 Prupe.1G528400_v2.0.a1
pyrus_communis	pycom15g34220
rosa_chinensis	RchiOBHm_Chr7g0237251 RchiOBHm_Chr7g0237271 RchiOBHm_Chr7g0237281 RchiOBHm_Chr7g0237311 RchiOBHm_Chr7g0237321
rosa_laevigata	RLG00000001012 RLG00000001018
rosa_multiflora	Rmu_sc0002923.1_g000043 Rmu_sc0002923.1_g000049 Rmu_sc0006438.1_g000001 Rmu_sc0006438.1_g000006 Rmu_sc0006438.1_g000007
rosa_roxburghii	Rroxscaffold_3G00224320
rosa_rugosa	Rorug07G0302600 Rorug07G0302700
rosa_samantha	Rh7AG459300 Rh7AG459500 Rh7AG459600 Rh7AG459700 Rh7AG459800 Rh7BG429700 Rh7CG477100 Rh7DG446400
rosa_wichuraiana	Rw0G003870 Rw7G038060 Rw7G038080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	456
AciI	CCGC	3 cut(s)	66, 509, 546
AclWI	GGATC	3 cut(s)	105, 118, 276
AcsI	RAATTY	1 cut(s)	203
AcuI	CTGAAG	2 cut(s)	489, 555
AdeI	CACNNNGTG	1 cut(s)	560
AfaI	GTAC	3 cut(s)	248, 336, 488
AflIII	ACRYGT	1 cut(s)	386
AgsI	TTSAA	3 cut(s)	332, 374, 479
AjnI	CCWGG	2 cut(s)	352, 376
AluBI	AGCT	2 cut(s)	370, 524
AluI	AGCT	2 cut(s)	370, 524
Alw21I	GWGCWC	3 cut(s)	266, 309, 526
Alw44I	GTGCAC	1 cut(s)	305
AlwI	GGATC	3 cut(s)	105, 118, 276
AoxI	GGCC	1 cut(s)	347
ApaLI	GTGCAC	1 cut(s)	305
ApeKI	GCWGC	2 cut(s)	172, 464
ApoI	RAATTY	1 cut(s)	203
ArsI	GACNNNNNNTTYG	2 cut(s)	386, 418
AsuHPI	GGTGA	3 cut(s)	238, 404, 543
BaeGI	GKGCMC	1 cut(s)	309
BamHI	GGATCC	1 cut(s)	110
BanI	GGYRCC	1 cut(s)	456
BanII	GRGCYC	1 cut(s)	526
Bbv12I	GWGCWC	3 cut(s)	266, 309, 526
BbvI	GCAGC	2 cut(s)	184, 451
BccI	CCATC	4 cut(s)	16, 95, 209, 293
BciT130I	CCWGG	2 cut(s)	354, 378
BfmI	CTRYAG	1 cut(s)	413
BisI	GCNGC	4 cut(s)	66, 173, 465, 510
BlsI	GCNGC	4 cut(s)	67, 174, 466, 511
BmcAI	AGTACT	1 cut(s)	336
Bme1390I	CCNGG	2 cut(s)	354, 378
BmiI	GGNNCC	2 cut(s)	112, 458
BmrFI	CCNGG	2 cut(s)	354, 378
BsaBI	GATNNNNATC	2 cut(s)	109, 219
BsaJI	CCNNGG	3 cut(s)	114, 554, 574
Bse8I	GATNNNNATC	2 cut(s)	109, 219
BseBI	CCWGG	2 cut(s)	354, 378
BseDI	CCNNGG	3 cut(s)	114, 554, 574
BseGI	GGATG	2 cut(s)	31, 282
BseJI	GATNNNNATC	2 cut(s)	109, 219
BseMII	CTCAG	1 cut(s)	284
BseSI	GKGCMC	1 cut(s)	309
BseXI	GCAGC	2 cut(s)	184, 451
Bsh1285I	CGRYCG	1 cut(s)	454
BshFI	GGCC	1 cut(s)	349
BshNI	GGYRCC	1 cut(s)	456
BsiEI	CGRYCG	1 cut(s)	454
BsiHKAI	GWGCWC	3 cut(s)	266, 309, 526
BsmI	GAATGC	1 cut(s)	414
BsnI	GGCC	1 cut(s)	349
Bsp1286I	GDGCHC	3 cut(s)	266, 309, 526
Bsp1407I	TGTACA	1 cut(s)	486
Bsp143I	GATC	4 cut(s)	110, 268, 451, 492
BspACI	CCGC	3 cut(s)	66, 509, 546
BspANI	GGCC	1 cut(s)	349
BspCNI	CTCAG	1 cut(s)	285
BspHI	TCATGA	1 cut(s)	358
BspLI	GGNNCC	2 cut(s)	112, 458
BspPI	GGATC	3 cut(s)	105, 118, 276
BspT107I	GGYRCC	1 cut(s)	456
BsrGI	TGTACA	1 cut(s)	486
BssECI	CCNNGG	3 cut(s)	114, 554, 574
BssMI	GATC	4 cut(s)	110, 268, 451, 492
BssT1I	CCWWGG	1 cut(s)	114
Bst2UI	CCWGG	2 cut(s)	354, 378
Bst4CI	ACNGT	2 cut(s)	46, 244
BstAUI	TGTACA	1 cut(s)	486
BstC8I	GCNNGC	4 cut(s)	6, 75, 276, 305
BstDEI	CTNAG	1 cut(s)	293
BstDSI	CCRYGG	1 cut(s)	554
BstF5I	GGATG	2 cut(s)	31, 282
BstKTI	GATC	4 cut(s)	113, 271, 454, 495
BstMBI	GATC	4 cut(s)	110, 268, 451, 492
BstMCI	CGRYCG	1 cut(s)	454
BstMWI	GCNNNNNNNGC	3 cut(s)	74, 506, 530
BstNI	CCWGG	2 cut(s)	354, 378
BstNSI	RCATGY	2 cut(s)	278, 390
BstSCI	CCNGG	2 cut(s)	352, 376
BstSFI	CTRYAG	1 cut(s)	413
BstSLI	GKGCMC	1 cut(s)	309
BstV1I	GCAGC	2 cut(s)	184, 451
BstX2I	RGATCY	1 cut(s)	110
BstXI	CCANNNNNNTGG	1 cut(s)	121
BstYI	RGATCY	1 cut(s)	110
BsuRI	GGCC	1 cut(s)	349
BtgI	CCRYGG	1 cut(s)	554
BtgZI	GCGATG	1 cut(s)	481
BtsCI	GGATG	2 cut(s)	31, 282
BtsIMutI	CAGTG	2 cut(s)	42, 249
Cac8I	GCNNGC	4 cut(s)	6, 75, 276, 305
CciI	TCATGA	1 cut(s)	358
CsiI	ACCWGGT	1 cut(s)	376
Csp6I	GTAC	3 cut(s)	247, 335, 487
CviAII	CATG	5 cut(s)	184, 275, 359, 387, 505
CviJI	RGCY	8 cut(s)	8, 32, 95, 147, 349, 370, 449, 524
CviKI_1	RGCY	8 cut(s)	8, 32, 95, 147, 349, 370, 449, 524
CviQI	GTAC	3 cut(s)	247, 335, 487
DdeI	CTNAG	1 cut(s)	293
DpnI	GATC	4 cut(s)	112, 270, 453, 494
DpnII	GATC	4 cut(s)	110, 268, 451, 492
DraIII	CACNNNGTG	1 cut(s)	560
Ecl136II	GAGCTC	1 cut(s)	524
Eco130I	CCWWGG	1 cut(s)	114
Eco147I	AGGCCT	1 cut(s)	349
Eco24I	GRGCYC	1 cut(s)	526
Eco53kI	GAGCTC	1 cut(s)	524
Eco57I	CTGAAG	2 cut(s)	489, 555
EcoICRI	GAGCTC	1 cut(s)	524
EcoRII	CCWGG	2 cut(s)	352, 376
EcoT14I	CCWWGG	1 cut(s)	114
EcoT22I	ATGCAT	1 cut(s)	280
EcoT38I	GRGCYC	1 cut(s)	526
ErhI	CCWWGG	1 cut(s)	114
FaeI	CATG	5 cut(s)	187, 278, 362, 390, 508
FaiI	YATR	9 cut(s)	82, 122, 185, 276, 280, 360, 388, 506, 601
FatI	CATG	5 cut(s)	183, 274, 358, 386, 504
Fnu4HI	GCNGC	4 cut(s)	66, 173, 465, 510
FokI	GGATG	2 cut(s)	38, 269
FriOI	GRGCYC	1 cut(s)	526
Fsp4HI	GCNGC	4 cut(s)	66, 173, 465, 510
GluI	GCNGC	4 cut(s)	66, 173, 465, 510
HaeIII	GGCC	1 cut(s)	349
Hin1II	CATG	5 cut(s)	187, 278, 362, 390, 508
HinfI	GANTC	3 cut(s)	188, 229, 423
HphI	GGTGA	3 cut(s)	238, 404, 543
Hpy166II	GTNNAC	3 cut(s)	247, 307, 551
Hpy188III	TCNNGA	1 cut(s)	359
Hpy8I	GTNNAC	3 cut(s)	247, 307, 551
HpyAV	CCTTC	1 cut(s)	530
HpyCH4III	ACNGT	2 cut(s)	46, 244
HpyCH4V	TGCA	3 cut(s)	172, 278, 307
HpyF10VI	GCNNNNNNNGC	3 cut(s)	74, 506, 530
HpyF3I	CTNAG	1 cut(s)	293
Hsp92II	CATG	5 cut(s)	187, 278, 362, 390, 508
Kzo9I	GATC	4 cut(s)	110, 268, 451, 492
LmnI	GCTCC	2 cut(s)	261, 367
LpnPI	CCDG	7 cut(s)	70, 75, 339, 363, 366, 390, 401
Lsp1109I	GCAGC	2 cut(s)	184, 451
MabI	ACCWGGT	1 cut(s)	376
MaeIII	GTNAC	3 cut(s)	319, 382, 392
MalI	GATC	4 cut(s)	112, 270, 453, 494
MboI	GATC	4 cut(s)	110, 268, 451, 492
MboII	GAAGA	2 cut(s)	122, 482
MflI	RGATCY	1 cut(s)	110
MhlI	GDGCHC	3 cut(s)	266, 309, 526
MluCI	AATT	2 cut(s)	203, 310
MmeI	TCCRAC	1 cut(s)	310
MnlI	CCTC	4 cut(s)	22, 360, 584, 586
Mph1103I	ATGCAT	1 cut(s)	280
MseI	TTAA	2 cut(s)	51, 434
MspR9I	CCNGG	2 cut(s)	354, 378
Mva1269I	GAATGC	1 cut(s)	414
MvaI	CCWGG	2 cut(s)	354, 378
MwoI	GCNNNNNNNGC	3 cut(s)	74, 506, 530
NdeII	GATC	4 cut(s)	110, 268, 451, 492
NlaIII	CATG	5 cut(s)	187, 278, 362, 390, 508
NlaIV	GGNNCC	2 cut(s)	112, 458
NmeAIII	GCCGAG	1 cut(s)	555
NmuCI	GTSAC	3 cut(s)	319, 382, 392
NsiI	ATGCAT	1 cut(s)	280
NspI	RCATGY	2 cut(s)	278, 390
PaeI	GCATGC	1 cut(s)	278
PagI	TCATGA	1 cut(s)	358
PceI	AGGCCT	1 cut(s)	349
PciI	ACATGT	1 cut(s)	386
PctI	GAATGC	1 cut(s)	414
PfeI	GAWTC	3 cut(s)	188, 229, 423
PkrI	GCNGC	4 cut(s)	67, 174, 466, 511
Ple19I	CGATCG	1 cut(s)	454
PscI	ACATGT	1 cut(s)	386
Psp124BI	GAGCTC	1 cut(s)	526
Psp6I	CCWGG	2 cut(s)	352, 376
PspGI	CCWGG	2 cut(s)	352, 376
PspN4I	GGNNCC	2 cut(s)	112, 458
PsuI	RGATCY	1 cut(s)	110
PvuI	CGATCG	1 cut(s)	454
RsaI	GTAC	3 cut(s)	248, 336, 488
RsaNI	GTAC	3 cut(s)	247, 335, 487
SacI	GAGCTC	1 cut(s)	526
SaqAI	TTAA	2 cut(s)	51, 434
SatI	GCNGC	4 cut(s)	66, 173, 465, 510
Sau3AI	GATC	4 cut(s)	110, 268, 451, 492
ScaI	AGTACT	1 cut(s)	336
ScrFI	CCNGG	2 cut(s)	354, 378
SduI	GDGCHC	3 cut(s)	266, 309, 526
SetI	ASST	5 cut(s)	213, 372, 382, 420, 526
SexAI	ACCWGGT	1 cut(s)	376
SfcI	CTRYAG	1 cut(s)	413
SphI	GCATGC	1 cut(s)	278
Sse9I	AATT	2 cut(s)	203, 310
SseBI	AGGCCT	1 cut(s)	349
SsiI	CCGC	3 cut(s)	66, 509, 546
SstI	GAGCTC	1 cut(s)	526
StuI	AGGCCT	1 cut(s)	349
StyD4I	CCNGG	2 cut(s)	352, 376
StyI	CCWWGG	1 cut(s)	114
TaaI	ACNGT	2 cut(s)	46, 244
TasI	AATT	2 cut(s)	203, 310
TatI	WGTACW	2 cut(s)	334, 486
TauI	GCSGC	2 cut(s)	68, 512
TfiI	GAWTC	3 cut(s)	188, 229, 423
Tru1I	TTAA	2 cut(s)	51, 434
Tru9I	TTAA	2 cut(s)	51, 434
TscAI	CASTG	2 cut(s)	49, 249
TseFI	GTSAC	3 cut(s)	319, 382, 392
TseI	GCWGC	2 cut(s)	172, 464
Tsp45I	GTSAC	3 cut(s)	319, 382, 392
TspDTI	ATGAA	3 cut(s)	316, 415, 456
TspGWI	ACGGA	3 cut(s)	264, 281, 571
TspRI	CASTG	2 cut(s)	49, 249
VneI	GTGCAC	1 cut(s)	305
XapI	RAATTY	1 cut(s)	203
XceI	RCATGY	2 cut(s)	278, 390
ZrmI	AGTACT	1 cut(s)	336
Zsp2I	ATGCAT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.