Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003139.1

Orthogroup ID

OG0005174

Physical Location & Seq

Genomic Coordinates Forward (+)

158305 .. 160590

Gene Structure 2286 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

atggaggtaatgaagtcattatccgatgttgcagactccaagcaacaacaagaacagcagcagcagcagcagcaacaacatttccatgttttggctgtagatgacagtgttatagacaggaagctgttggagaggctcctcaaaggttcttcatacaaagtgacttgtgtggactctggggatgaagctcttaaatatctgggtttgattgatcatgatgaccaaaaacctacagattcatcttcattcacttccccatatcctcagcagtcgtcatcagaacaagagggctcaaaagtcatcaatctgatcatgacagactactgtatgcccgggatgagcggctatgatttgctgaaaagggtcaagggatcttcttggaaagatataccagtcgtagtcatgtcatcagagaatgttccttcaagaattaacatgtgcttggaagaaggggctgaggagtttctcttaaagccacttcagatatcagatttgaagaagcttcagccttacttgcttaaaacccttgaccaaccttcttctcgtgatagcagcattgacagtagcaacaatctcgtagttgaggagatcggtgatgatgatcacgatggccaaagcaaaatcaatgaggagatcaataagggtagcgtgatgaataatactaatgctagtagtattagcaagaggaaggcagtaactactgaaacatcagacagaatacccaagatgaaaggtttagttgtagcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000156 GO:0000160 GO:0003674 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0007154 GO:0007165 GO:0007623 GO:0008150 GO:0009719 GO:0009725 GO:0009735 GO:0009736 GO:0009755 GO:0009889 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031326 GO:0032870 GO:0035556 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048511 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051252 GO:0051716 GO:0060089 GO:0060255 GO:0065007 GO:0070887 GO:0071310 GO:0071368 GO:0071495 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04075 map04075

Pfam Domains

Protein Families

Response_reg

Protein Analysis

249

Amino Acids

27.72

Weight (kDa)

4.88

Isoelectric Point (pI)

61.2

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Response_reg	PF00072	99 - 167	5.1e-13	Response regulator receiver domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0005174)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_2g27180
malus_domestica	MD08G1161200.v1.1 MD15G1346400.v1.1
prunus_persica	Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1 Prupe.1G494200_v2.0.a1
pyrus_communis	pycom08g13860 pycom15g31040
rosa_chinensis	RchiOBHm_Chr5g0027891 RchiOBHm_Chr6g0296091
rosa_laevigata	RLG00000011733 RLG00000033051
rosa_multiflora	Rmu_sc0003139.1_g000038
rosa_roxburghii	Rroxscaffold_1G00051740 Rroxscaffold_7G00178190
rosa_rugosa	Rorug06G0257700
rosa_samantha	Rh5AG196600 Rh5BG194500 Rh5CG214400 Rh5DG196200 Rh6AG370500 Rh6BG377900 Rh6CG383500 Rh6DG370400
rosa_wichuraiana	Rw5G017890 Rw6G032290

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	91
AccBSI	CCGCTC	1 cut(s)	342
AciI	CCGC	1 cut(s)	342
AclWI	GGATC	1 cut(s)	379
AcoI	YGGCCR	1 cut(s)	610
AcuI	CTGAAG	2 cut(s)	464, 488
AfiI	CCNNNNNNNGG	1 cut(s)	91
AflIII	ACRYGT	1 cut(s)	435
AgsI	TTSAA	2 cut(s)	426, 496
AluBI	AGCT	3 cut(s)	124, 188, 502
AluI	AGCT	3 cut(s)	124, 188, 502
AlwI	GGATC	1 cut(s)	379
Ama87I	CYCGRG	1 cut(s)	332
AoxI	GGCC	1 cut(s)	610
ApeKI	GCWGC	6 cut(s)	58, 61, 64, 67, 70, 552
AsuC2I	CCSGG	2 cut(s)	333, 334
AsuHPI	GGTGA	1 cut(s)	605
AvaI	CYCGRG	1 cut(s)	332
BalI	TGGCCA	1 cut(s)	612
BanII	GRGCYC	1 cut(s)	293
BauI	CACGAG	1 cut(s)	543
BbvCI	CCTCAGC	2 cut(s)	264, 456
BbvI	GCAGC	6 cut(s)	70, 73, 76, 79, 82, 564
BccI	CCATC	1 cut(s)	602
BcgI	CGANNNNNNTGC	2 cut(s)	556, 590
BclI	TGATCA	3 cut(s)	211, 309, 601
BcnI	CCSGG	2 cut(s)	333, 334
BfaI	CTAG	1 cut(s)	669
BfmI	CTRYAG	2 cut(s)	96, 231
BisI	GCNGC	7 cut(s)	59, 62, 65, 68, 71, 343, 553
BlsI	GCNGC	7 cut(s)	60, 63, 66, 69, 72, 344, 554
Bme1390I	CCNGG	2 cut(s)	333, 334
BmeT110I	CYCGRG	1 cut(s)	332
BmiI	GGNNCC	1 cut(s)	137
BmrFI	CCNGG	2 cut(s)	333, 334
Bpu10I	CCTNAGC	2 cut(s)	264, 456
BpuMI	CCSGG	2 cut(s)	333, 334
BsaBI	GATNNNNATC	1 cut(s)	600
BsaJI	CCNNGG	1 cut(s)	332
Bsc4I	CCNNNNNNNGG	1 cut(s)	91
Bse1I	ACTGG	1 cut(s)	392
Bse8I	GATNNNNATC	1 cut(s)	600
BseDI	CCNNGG	1 cut(s)	332
BseGI	GGATG	2 cut(s)	187, 342
BseJI	GATNNNNATC	1 cut(s)	600
BseLI	CCNNNNNNNGG	1 cut(s)	91
BseMII	CTCAG	2 cut(s)	278, 447
BseNI	ACTGG	1 cut(s)	392
BseRI	GAGGAG	4 cut(s)	128, 473, 599, 644
BseXI	GCAGC	6 cut(s)	70, 73, 76, 79, 82, 564
BshFI	GGCC	1 cut(s)	612
BsiHKCI	CYCGRG	1 cut(s)	332
BsiSI	CCGG	1 cut(s)	333
BslI	CCNNNNNNNGG	1 cut(s)	91
BsnI	GGCC	1 cut(s)	612
BsoBI	CYCGRG	1 cut(s)	332
Bsp1286I	GDGCHC	1 cut(s)	293
Bsp143I	GATC	6 cut(s)	211, 309, 371, 588, 601, 633
BspACI	CCGC	1 cut(s)	342
BspANI	GGCC	1 cut(s)	612
BspCNI	CTCAG	2 cut(s)	277, 448
BspHI	TCATGA	2 cut(s)	214, 312
BspLI	GGNNCC	1 cut(s)	137
BspPI	GGATC	1 cut(s)	379
BsrBI	CCGCTC	1 cut(s)	342
BsrI	ACTGG	1 cut(s)	392
BssECI	CCNNGG	1 cut(s)	332
BssMI	GATC	6 cut(s)	211, 309, 371, 588, 601, 633
BssSI	CACGAG	1 cut(s)	543
Bst2BI	CACGAG	1 cut(s)	543
Bst4CI	ACNGT	3 cut(s)	107, 326, 563
BstDEI	CTNAG	2 cut(s)	264, 456
BstF5I	GGATG	2 cut(s)	187, 342
BstKTI	GATC	6 cut(s)	214, 312, 374, 591, 604, 636
BstMBI	GATC	6 cut(s)	211, 309, 371, 588, 601, 633
BstMWI	GCNNNNNNNGC	4 cut(s)	64, 67, 70, 514
BstNSI	RCATGY	1 cut(s)	439
BstSCI	CCNGG	2 cut(s)	331, 332
BstSFI	CTRYAG	2 cut(s)	96, 231
BstV1I	GCAGC	6 cut(s)	70, 73, 76, 79, 82, 564
BstX2I	RGATCY	1 cut(s)	371
BstYI	RGATCY	1 cut(s)	371
BsuRI	GGCC	1 cut(s)	612
BtsCI	GGATG	2 cut(s)	187, 342
BtsIMutI	CAGTG	1 cut(s)	112
CciI	TCATGA	2 cut(s)	214, 312
Cfr9I	CCCGGG	1 cut(s)	332
CviAII	CATG	5 cut(s)	86, 215, 313, 403, 436
DdeI	CTNAG	2 cut(s)	264, 456
DpnI	GATC	6 cut(s)	213, 311, 373, 590, 603, 635
DpnII	GATC	6 cut(s)	211, 309, 371, 588, 601, 633
EaeI	YGGCCR	1 cut(s)	610
Eco24I	GRGCYC	1 cut(s)	293
Eco32I	GATATC	1 cut(s)	486
Eco57I	CTGAAG	2 cut(s)	464, 488
Eco88I	CYCGRG	1 cut(s)	332
EcoRV	GATATC	1 cut(s)	486
EcoT38I	GRGCYC	1 cut(s)	293
FaeI	CATG	5 cut(s)	89, 218, 316, 406, 439
FatI	CATG	5 cut(s)	85, 214, 312, 402, 435
FbaI	TGATCA	3 cut(s)	211, 309, 601
Fnu4HI	GCNGC	7 cut(s)	59, 62, 65, 68, 71, 343, 553
FokI	GGATG	2 cut(s)	194, 349
FriOI	GRGCYC	1 cut(s)	293
Fsp4HI	GCNGC	7 cut(s)	59, 62, 65, 68, 71, 343, 553
FspBI	CTAG	1 cut(s)	669
GluI	GCNGC	7 cut(s)	59, 62, 65, 68, 71, 343, 553
HaeIII	GGCC	1 cut(s)	612
HapII	CCGG	1 cut(s)	333
Hin1II	CATG	5 cut(s)	89, 218, 316, 406, 439
HindIII	AAGCTT	1 cut(s)	500
HinfI	GANTC	3 cut(s)	35, 173, 236
HpaII	CCGG	1 cut(s)	333
HphI	GGTGA	1 cut(s)	605
Hpy166II	GTNNAC	1 cut(s)	172
Hpy188I	TCNGA	7 cut(s)	25, 280, 309, 412, 483, 490, 712
Hpy188III	TCNNGA	5 cut(s)	215, 313, 426, 545, 605
Hpy8I	GTNNAC	1 cut(s)	172
HpyAV	CCTTC	4 cut(s)	432, 443, 546, 682
HpyCH4III	ACNGT	3 cut(s)	107, 326, 563
HpyCH4V	TGCA	1 cut(s)	32
HpyF10VI	GCNNNNNNNGC	4 cut(s)	64, 67, 70, 514
HpyF3I	CTNAG	2 cut(s)	264, 456
Hsp92II	CATG	5 cut(s)	89, 218, 316, 406, 439
Ksp22I	TGATCA	3 cut(s)	211, 309, 601
Kzo9I	GATC	6 cut(s)	211, 309, 371, 588, 601, 633
LmnI	GCTCC	1 cut(s)	141
LpnPI	CCDG	5 cut(s)	103, 162, 185, 346, 405
Lsp1109I	GCAGC	6 cut(s)	70, 73, 76, 79, 82, 564
MaeI	CTAG	1 cut(s)	669
MaeIII	GTNAC	2 cut(s)	160, 694
MalI	GATC	6 cut(s)	213, 311, 373, 590, 603, 635
MbiI	CCGCTC	1 cut(s)	342
MboI	GATC	6 cut(s)	211, 309, 371, 588, 601, 633
MboII	GAAGA	6 cut(s)	141, 234, 366, 458, 508, 531
MflI	RGATCY	1 cut(s)	371
MhlI	GDGCHC	1 cut(s)	293
MlsI	TGGCCA	1 cut(s)	612
MluCI	AATT	1 cut(s)	429
MluNI	TGGCCA	1 cut(s)	612
MlyI	GAGTC	2 cut(s)	29, 167
MmeI	TCCRAC	1 cut(s)	108
MnlI	CCTC	8 cut(s)	126, 149, 273, 280, 451, 577, 622, 678
Mox20I	TGGCCA	1 cut(s)	612
MscI	TGGCCA	1 cut(s)	612
MseI	TTAA	4 cut(s)	192, 432, 470, 519
MslI	CAYNNNNRTG	1 cut(s)	84
Msp20I	TGGCCA	1 cut(s)	612
MspI	CCGG	1 cut(s)	333
MspR9I	CCNGG	2 cut(s)	333, 334
MwoI	GCNNNNNNNGC	4 cut(s)	64, 67, 70, 514
NciI	CCSGG	2 cut(s)	333, 334
NdeII	GATC	6 cut(s)	211, 309, 371, 588, 601, 633
NlaIII	CATG	5 cut(s)	89, 218, 316, 406, 439
NlaIV	GGNNCC	1 cut(s)	137
NmuCI	GTSAC	1 cut(s)	160
NspI	RCATGY	1 cut(s)	439
PagI	TCATGA	2 cut(s)	214, 312
PciI	ACATGT	1 cut(s)	435
PfeI	GAWTC	1 cut(s)	236
PflMI	CCANNNNNTGG	1 cut(s)	91
PkrI	GCNGC	7 cut(s)	60, 63, 66, 69, 72, 344, 554
PleI	GAGTC	2 cut(s)	29, 167
PpsI	GAGTC	2 cut(s)	29, 167
PscI	ACATGT	1 cut(s)	435
PspN4I	GGNNCC	1 cut(s)	137
PsuI	RGATCY	1 cut(s)	371
RseI	CAYNNNNRTG	1 cut(s)	84
SaqAI	TTAA	4 cut(s)	192, 432, 470, 519
SatI	GCNGC	7 cut(s)	59, 62, 65, 68, 71, 343, 553
Sau3AI	GATC	6 cut(s)	211, 309, 371, 588, 601, 633
SchI	GAGTC	2 cut(s)	29, 167
ScrFI	CCNGG	2 cut(s)	333, 334
SduI	GDGCHC	1 cut(s)	293
SetI	ASST	8 cut(s)	9, 126, 148, 190, 232, 504, 538, 736
SfcI	CTRYAG	2 cut(s)	96, 231
SmaI	CCCGGG	1 cut(s)	334
SmiMI	CAYNNNNRTG	1 cut(s)	84
Sse9I	AATT	1 cut(s)	429
SsiI	CCGC	1 cut(s)	342
SspMI	CTAG	1 cut(s)	669
StyD4I	CCNGG	2 cut(s)	331, 332
TaaI	ACNGT	3 cut(s)	107, 326, 563
TasI	AATT	1 cut(s)	429
TauI	GCSGC	1 cut(s)	345
TfiI	GAWTC	1 cut(s)	236
Tru1I	TTAA	4 cut(s)	192, 432, 470, 519
Tru9I	TTAA	4 cut(s)	192, 432, 470, 519
TscAI	CASTG	1 cut(s)	112
TseFI	GTSAC	1 cut(s)	160
TseI	GCWGC	6 cut(s)	58, 61, 64, 67, 70, 552
Tsp45I	GTSAC	1 cut(s)	160
TspDTI	ATGAA	7 cut(s)	26, 141, 198, 228, 234, 668, 743
TspMI	CCCGGG	1 cut(s)	332
TspRI	CASTG	1 cut(s)	112
Van91I	CCANNNNNTGG	1 cut(s)	91
XceI	RCATGY	1 cut(s)	439
XmaI	CCCGGG	1 cut(s)	332
XspI	CTAG	1 cut(s)	669

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.