Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003153.1

Orthogroup ID

OG0002491

Physical Location & Seq

Genomic Coordinates Reverse (-)

22910 .. 25495

Gene Structure 2586 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2586 bp

atgcgagtggccacagaaataagccatgaactcttcagaactcttcagaaatgcaatgaagagttcatagctccgaaaagcatgatatcttcttcttcttcttccacctcttcattctcaaccctaatccttctcacccgccgccgctctcttcttctctactccacttccccattctcctccaaaaccctaatccaccaaatctcaaccgccttcctccaaaacaaccccaaactcttaccccccgttcccgtctccaaattacacccacaccacgtccaccccatcctcctccgcctccagtccgaccccgtcgccgcccttcgcttcttcgactggtcccgcacctctctcggcttcacccactcgccgcagtccttctccgccctcattcacctcctgcttcgccgccgattactcgctccggcttctcgggttttcgataccatggtacgccaattcggtactcaatttaacatttctgctgcttttacagagaattttagtagctacggttcaaatttgagttatgttggtggttttctgattgagaatttttgccgaaatggggagttggattctgctgttgaggcattggtttgtatgtgtgcattgggtgcttcggtgccgcctttttctgtgtgtagaattttgagtgcttgtgttgatgcgaatcgtgcacatgtgattcttgatatatatggaaaattgtgtggacaaggctttggtgtttacgagtttgttatgtcaaggcttttgggcaatggtgaagttgaaatgggattgaattttcattcagcagtgatggatagaggttttgtgcttgatgtagttgcttgtaacaagattttgaagcttctttgtagagaaaatcagaaaggagcggaggatttctttgatgtgttactaagggttggtccggagccaaatgtggtgacttttagcaccatgattaacacgtactgtaaagatcggaggttggaagaggcaattaagctttatgaggttatgaaagagaagggtatcagtccggacttggttgtgtatagcattcttattgacggtctctttaaggcagggaagttggaggaggggcatcgacttctttctgttgcattagatagtgggattaagttggatgtagtcatcttcagttctgttatggatgcatatgtaagaactagaaatttggaaaagctagtggaggtgtacagaaggatgtataacgaagggatctcacagaacactgttagttacagtgttcttataaacggcttgtgccagaatggaaggataatggaggcttgtgggatattcggtcagattgtgaagcatggttttgtgccgtccattctaacttatagtagtttgattgatggaatatgcaaactggggaatttaaaagatgcatttaacctgtatgagagtatggtcaagactggttatgaacctgatattattctttatggtgtgctattaaatggcctttgcaagcatggactgatgagtgacgctcttaggttcttctttcaggttattaataggggtgtaaagccaaatgtttatacttttaatatgttgatagatggctcctgtagattgaatagattaaaaaatgctgtgaaggtgtacagccaaatgcgaatgtataacataagaccagatgtggtgacgtatactgtgcttattcgaggcatttctgaattggggagactaaatgatgcactagtgtttttcttccaatcattgaagaggggtttcttgcctgatgttgtaacatattgcaccctcattgatgcttgctgcaagcagaaatatgtatatgctggattccggatttttgagatgatgctaacaaatcgagtcaatcctgatattaccatttataatgttctcattaatatgcttttcaaagaaggttatttagaagctgcacagacactctttgaacaacttactgaaagagggctacgacctgatatggttacatacaatacaatggtttgtggttattgttctctgagaaggttagatgaagctgttcacctttttcaacaaatgacactgggacactgtaaacccaatgccatcacttgtagtatattgatcgatgctttctgtaaagaaggtaaaatggacgatgcagtgttattgtttgatcaaatgctggaaaaggatcctgaacctaatgtggtcacctatagttgtctgattgatggttattttaaatctgaaaacatggaaagtgcctttgaactatatgaagagatgcttcagagtatctctccaaatatagttagttacagcatcctcattgatggtctttgcaaaagaggactgatgaagaaagcagcccttgcatttcattctgctataaacaggggtctggtgccggatgtagtagcatatgggatcctgattcatggttactgcaaggttggaagaacggcagaagccatggcattgtacggtcgtatgttaataagtggaatcatgccggatgctatcatacaaaggatgattgcgaagcaccttcttgaaattcggtcccaccaaaatatgagcgcccaaccagatgttctgtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

PPR PPR_1 PPR_2 PPR_3

Protein Analysis

861

Amino Acids

96.77

Weight (kDa)

8.33

Isoelectric Point (pI)

38.13

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	276 - 323	2.7e-09	PPR repeat family
TPR_24	PF23276	295 - 406	2.4e-08	Fungal tetratrico peptide repeats
PPR_1	PF12854	306 - 338	3.2e-11	PPR repeat
PPR_3	PF13812	307 - 354	6.5e-07	Pentatricopeptide repeat domain
PPR_2	PF13041	309 - 358	3.8e-18	PPR repeat family
PPR	PF01535	312 - 342	1.6e-08	PPR repeat
PPR_1	PF12854	340 - 369	2.9e-07	PPR repeat
PPR_3	PF13812	373 - 424	6.1e-08	Pentatricopeptide repeat domain
PPR_2	PF13041	380 - 428	1.4e-10	PPR repeat family
PPR_1	PF12854	411 - 441	1.3e-07	PPR repeat
PPR_2	PF13041	415 - 463	5.1e-13	PPR repeat family
PPR	PF01535	417 - 447	3.1e-06	PPR repeat
PPR_3	PF13812	438 - 494	3.4e-06	Pentatricopeptide repeat domain
PPR_1	PF12854	446 - 478	5.9e-09	PPR repeat
PPR_2	PF13041	456 - 498	1.9e-10	PPR repeat family
PPR_1	PF12854	481 - 509	1.6e-06	PPR repeat
PPR_2	PF13041	484 - 533	2.3e-13	PPR repeat family
PPR_3	PF13812	513 - 564	2.5e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	515 - 548	2.6e-11	PPR repeat
PPR_2	PF13041	524 - 566	6.4e-12	PPR repeat family
PPR_2	PF13041	556 - 603	2.8e-11	PPR repeat family
PPR_3	PF13812	585 - 636	3.7e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	585 - 617	2.5e-06	PPR repeat
PPR_2	PF13041	589 - 626	1.1e-06	PPR repeat family
PPR_long	PF17177	602 - 712	1.9e-07	Pentacotripeptide-repeat region of PRORP
PPR_2	PF13041	624 - 672	4.4e-14	PPR repeat family
PPR_3	PF13812	648 - 708	3.6e-07	Pentatricopeptide repeat domain
PPR_1	PF12854	655 - 688	9.3e-12	PPR repeat
PPR_2	PF13041	659 - 708	3.4e-16	PPR repeat family
PPR	PF01535	662 - 687	8.3e-07	PPR repeat
PPR_1	PF12854	692 - 722	6.6e-11	PPR repeat
PPR	PF01535	697 - 725	4.1e-07	PPR repeat
PPR_2	PF13041	698 - 743	5.7e-14	PPR repeat family
PPR_3	PF13812	718 - 773	7.1e-08	Pentatricopeptide repeat domain
PPR_1	PF12854	728 - 757	1.1e-09	PPR repeat
PPR_2	PF13041	729 - 777	1.4e-17	PPR repeat family
PPR	PF01535	732 - 759	7e-07	PPR repeat
PPR_1	PF12854	761 - 784	8.4e-08	PPR repeat
PPR_1	PF12854	794 - 826	2.8e-10	PPR repeat
PPR_2	PF13041	798 - 835	1.2e-08	PPR repeat family
PPR	PF01535	801 - 831	7e-06	PPR repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0002491)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31840 AT1G31840
malus_domestica	MD12G1033400.v1.1
prunus_persica	Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G555500_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1 Prupe.1G569400_v2.0.a1
pyrus_communis	pycom12g03070
rosa_chinensis	RchiOBHm_Chr2g0139321 RchiOBHm_Chr7g0227311
rosa_laevigata	RLG00000001660
rosa_multiflora	Rmu_sc0001246.1_g000012 Rmu_sc0002525.1_g000013 Rmu_sc0003153.1_g000006 Rmu_sc0011922.1_g000005
rosa_roxburghii	Rroxscaffold_3G00232240
rosa_rugosa	Rorug07G0241200
rosa_samantha	Rh2BG417100 Rh7AG391100 Rh7AG391600 Rh7AG392200 Rh7AG392500 Rh7BG376100 Rh7CG192200 Rh7CG410100 Rh7CG410500 Rh7CG411300 Rh7CG411800 Rh7DG388700
rosa_wichuraiana	Rw7G032710 Rw7G032740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	2 cut(s)	1268, 1887
AccB1I	GGYRCC	2 cut(s)	625, 2389
AccBSI	CCGCTC	2 cut(s)	147, 884
AccI	GTMKAC	1 cut(s)	1676
AccIII	TCCGGA	3 cut(s)	919, 1030, 1833
AclWI	GGATC	5 cut(s)	1241, 2171, 2184, 2407, 2420
AcoI	YGGCCR	1 cut(s)	9
AcsI	RAATTY	8 cut(s)	499, 520, 553, 648, 787, 1186, 1396, 2541
AcuI	CTGAAG	4 cut(s)	19, 29, 1135, 2258
AfaI	GTAC	6 cut(s)	453, 466, 962, 1211, 1631, 2468
AfiI	CCNNNNNNNGG	1 cut(s)	568
AflIII	ACRYGT	2 cut(s)	682, 957
AhlI	ACTAGT	1 cut(s)	1726
AjiI	CACGTC	1 cut(s)	277
AjuI	GAANNNNNNNTTGG	1 cut(s)	2562
AluBI	AGCT	7 cut(s)	71, 510, 856, 997, 1198, 1931, 2039
AluI	AGCT	7 cut(s)	71, 510, 856, 997, 1198, 1931, 2039
Alw21I	GWGCWC	1 cut(s)	682
Alw26I	GTCTC	3 cut(s)	259, 1070, 1705
Alw44I	GTGCAC	1 cut(s)	678
AlwI	GGATC	5 cut(s)	1241, 2171, 2184, 2407, 2420
Ama87I	CYCGRG	1 cut(s)	432
Aor13HI	TCCGGA	3 cut(s)	919, 1030, 1833
AoxI	GGCC	2 cut(s)	9, 1483
ApaLI	GTGCAC	1 cut(s)	678
ApeKI	GCWGC	4 cut(s)	485, 1803, 1931, 2351
ApoI	RAATTY	8 cut(s)	499, 520, 553, 648, 787, 1186, 1396, 2541
AseI	ATTAAT	2 cut(s)	1539, 1899
Asp700I	GAANNNNTTC	1 cut(s)	2040
AspLEI	GCGC	1 cut(s)	2567
AspS9I	GGNCC	3 cut(s)	339, 917, 2547
AsuHPI	GGTGA	8 cut(s)	127, 352, 386, 779, 946, 1681, 2036, 2188
AvaI	CYCGRG	1 cut(s)	432
AvaII	GGWCC	3 cut(s)	339, 917, 2547
BaeGI	GKGCMC	1 cut(s)	682
BaeI	ACNNNNGTAYC	2 cut(s)	435, 468
BalI	TGGCCA	1 cut(s)	11
BamHI	GGATCC	2 cut(s)	2176, 2412
BanI	GGYRCC	2 cut(s)	625, 2389
Bbv12I	GWGCWC	1 cut(s)	682
BbvI	GCAGC	4 cut(s)	472, 1790, 1918, 2363
BccI	CCATC	7 cut(s)	293, 799, 1370, 1580, 2096, 2210, 2312
BceAI	ACGGC	3 cut(s)	1288, 1330, 2463
BcgI	CGANNNNNNTGC	2 cut(s)	334, 368
BclI	TGATCA	1 cut(s)	2158
BcoDI	GTCTC	3 cut(s)	259, 1070, 1705
BcuI	ACTAGT	1 cut(s)	1726
BfaI	CTAG	3 cut(s)	1182, 1199, 1727
BfmI	CTRYAG	2 cut(s)	1594, 2200
BfoI	RGCGCY	1 cut(s)	2568
Bme18I	GGWCC	3 cut(s)	339, 917, 2547
BmeT110I	CYCGRG	1 cut(s)	432
BmgBI	CACGTC	1 cut(s)	277
BmgT120I	GGNCC	3 cut(s)	339, 917, 2547
BmiI	GGNNCC	8 cut(s)	341, 627, 924, 1591, 2178, 2391, 2414, 2549
BmrI	ACTGGG	2 cut(s)	1400, 2075
BmuI	ACTGGG	2 cut(s)	1400, 2075
BplI	GAGNNNNNCTC	4 cut(s)	1498, 1530, 2269, 2301
BpmI	CTGGAG	1 cut(s)	284
Bsa29I	ATCGAT	1 cut(s)	2109
BsaAI	YACGTR	1 cut(s)	960
BsaBI	GATNNNNATC	1 cut(s)	672
BsaI	GGTCTC	1 cut(s)	1070
BsaJI	CCNNGG	2 cut(s)	447, 2457
BsaWI	WCCGGW	3 cut(s)	919, 1030, 1833
Bsc4I	CCNNNNNNNGG	1 cut(s)	568
Bse1I	ACTGG	5 cut(s)	301, 341, 1395, 1444, 2070
Bse3DI	GCAATG	2 cut(s)	61, 769
Bse8I	GATNNNNATC	1 cut(s)	672
BseAI	TCCGGA	3 cut(s)	919, 1030, 1833
BseCI	ATCGAT	1 cut(s)	2109
BseDI	CCNNGG	2 cut(s)	447, 2457
BseGI	GGATG	8 cut(s)	285, 1144, 1171, 1224, 2307, 2401, 2506, 2523
BseJI	GATNNNNATC	1 cut(s)	672
BseLI	CCNNNNNNNGG	1 cut(s)	568
BseMI	GCAATG	2 cut(s)	61, 769
BseMII	CTCAG	1 cut(s)	2012
BseNI	ACTGG	5 cut(s)	301, 341, 1395, 1444, 2070
BseRI	GAGGAG	3 cut(s)	169, 281, 1103
BseSI	GKGCMC	1 cut(s)	682
BseXI	GCAGC	4 cut(s)	472, 1790, 1918, 2363
BsgI	GTGCAG	1 cut(s)	1917
Bsh1285I	CGRYCG	1 cut(s)	2473
BshFI	GGCC	2 cut(s)	11, 1485
BshNI	GGYRCC	2 cut(s)	625, 2389
BshVI	ATCGAT	1 cut(s)	2109
BsiEI	CGRYCG	1 cut(s)	2473
BsiHKAI	GWGCWC	1 cut(s)	682
BsiHKCI	CYCGRG	1 cut(s)	432
BsiSI	CCGG	6 cut(s)	425, 920, 1031, 1834, 2393, 2498
BslFI	GGGAC	3 cut(s)	325, 2082, 2533
BslI	CCNNNNNNNGG	1 cut(s)	568
BsmAI	GTCTC	3 cut(s)	259, 1070, 1705
BsmBI	CGTCTC	1 cut(s)	259
BsmFI	GGGAC	3 cut(s)	325, 2082, 2533
BsmI	GAATGC	1 cut(s)	1050
BsnI	GGCC	2 cut(s)	11, 1485
Bso31I	GGTCTC	1 cut(s)	1070
BsoBI	CYCGRG	1 cut(s)	432
Bsp1286I	GDGCHC	1 cut(s)	682
Bsp13I	TCCGGA	3 cut(s)	919, 1030, 1833
Bsp1407I	TGTACA	2 cut(s)	1209, 1629
Bsp143I	GATC	6 cut(s)	970, 1233, 2106, 2158, 2176, 2412
Bsp19I	CCATGG	2 cut(s)	447, 2457
BspANI	GGCC	2 cut(s)	11, 1485
BspCNI	CTCAG	1 cut(s)	2013
BspDI	ATCGAT	1 cut(s)	2109
BspEI	TCCGGA	3 cut(s)	919, 1030, 1833
BspLI	GGNNCC	8 cut(s)	341, 627, 924, 1591, 2178, 2391, 2414, 2549
BspPI	GGATC	5 cut(s)	1241, 2171, 2184, 2407, 2420
BspT107I	GGYRCC	2 cut(s)	625, 2389
BspTNI	GGTCTC	1 cut(s)	1070
BsrBI	CCGCTC	2 cut(s)	147, 884
BsrDI	GCAATG	2 cut(s)	61, 769
BsrGI	TGTACA	2 cut(s)	1209, 1629
BsrI	ACTGG	5 cut(s)	301, 341, 1395, 1444, 2070
BssECI	CCNNGG	2 cut(s)	447, 2457
BssMI	GATC	6 cut(s)	970, 1233, 2106, 2158, 2176, 2412
BssNAI	GTATAC	1 cut(s)	1677
BssT1I	CCWWGG	2 cut(s)	447, 2457
Bst1107I	GTATAC	1 cut(s)	1677
Bst4CI	ACNGT	8 cut(s)	515, 965, 1064, 1249, 1259, 1681, 2075, 2471
Bst6I	CTCTTC	8 cut(s)	38, 48, 54, 115, 156, 978, 1745, 2259
BstAPI	GCANNNNNTGC	2 cut(s)	617, 2357
BstAUI	TGTACA	2 cut(s)	1209, 1629
BstBAI	YACGTR	1 cut(s)	960
BstC8I	GCNNGC	3 cut(s)	1493, 1801, 1808
BstDEI	CTNAG	3 cut(s)	908, 1517, 2021
BstDSI	CCRYGG	2 cut(s)	447, 2457
BstEII	GGTNACC	1 cut(s)	2194
BstF5I	GGATG	8 cut(s)	285, 1144, 1171, 1224, 2307, 2401, 2506, 2523
BstH2I	RGCGCY	1 cut(s)	2568
BstHHI	GCGC	1 cut(s)	2567
BstKTI	GATC	6 cut(s)	973, 1236, 2109, 2161, 2179, 2415
BstMAI	GTCTC	3 cut(s)	259, 1070, 1705
BstMBI	GATC	6 cut(s)	970, 1233, 2106, 2158, 2176, 2412
BstMCI	CGRYCG	1 cut(s)	2473
BstMWI	GCNNNNNNNGC	4 cut(s)	590, 617, 677, 2357
BstNSI	RCATGY	1 cut(s)	686
BstPI	GGTNACC	1 cut(s)	2194
BstSFI	CTRYAG	2 cut(s)	1594, 2200
BstSLI	GKGCMC	1 cut(s)	682
BstV1I	GCAGC	4 cut(s)	472, 1790, 1918, 2363
BstX2I	RGATCY	3 cut(s)	1233, 2176, 2412
BstYI	RGATCY	3 cut(s)	1233, 2176, 2412
BstZ17I	GTATAC	1 cut(s)	1677
Bsu15I	ATCGAT	1 cut(s)	2109
BsuRI	GGCC	2 cut(s)	11, 1485
BsuTUI	ATCGAT	1 cut(s)	2109
BtgI	CCRYGG	2 cut(s)	447, 2457
BtrI	CACGTC	1 cut(s)	277
BtsCI	GGATG	8 cut(s)	285, 1144, 1171, 1224, 2307, 2401, 2506, 2523
BtsI	GCAGTG	2 cut(s)	807, 2151
BtsIMutI	CAGTG	6 cut(s)	807, 1245, 1264, 2063, 2071, 2151
Cac8I	GCNNGC	3 cut(s)	1493, 1801, 1808
CfoI	GCGC	1 cut(s)	2567
Cfr13I	GGNCC	3 cut(s)	339, 917, 2547
ClaI	ATCGAT	1 cut(s)	2109
CseI	GACGC	1 cut(s)	1520
Csp6I	GTAC	6 cut(s)	452, 465, 961, 1210, 1630, 2467
CviQI	GTAC	6 cut(s)	452, 465, 961, 1210, 1630, 2467
DdeI	CTNAG	3 cut(s)	908, 1517, 2021
DpnI	GATC	6 cut(s)	972, 1235, 2108, 2160, 2178, 2414
DpnII	GATC	6 cut(s)	970, 1233, 2106, 2158, 2176, 2412
DraI	TTTAAA	2 cut(s)	1401, 2227
EaeI	YGGCCR	1 cut(s)	9
Eam1104I	CTCTTC	8 cut(s)	38, 48, 54, 115, 156, 978, 1745, 2259
EarI	CTCTTC	8 cut(s)	38, 48, 54, 115, 156, 978, 1745, 2259
EciI	GGCGGA	2 cut(s)	284, 373
Eco130I	CCWWGG	2 cut(s)	447, 2457
Eco31I	GGTCTC	1 cut(s)	1070
Eco32I	GATATC	1 cut(s)	87
Eco47I	GGWCC	3 cut(s)	339, 917, 2547
Eco57I	CTGAAG	4 cut(s)	19, 29, 1135, 2258
Eco88I	CYCGRG	1 cut(s)	432
Eco91I	GGTNACC	1 cut(s)	2194
EcoO65I	GGTNACC	1 cut(s)	2194
EcoRV	GATATC	1 cut(s)	87
EcoT14I	CCWWGG	2 cut(s)	447, 2457
EcoT22I	ATGCAT	2 cut(s)	1171, 1411
ErhI	CCWWGG	2 cut(s)	447, 2457
Esp3I	CGTCTC	1 cut(s)	259
FalI	AAGNNNNNCTT	4 cut(s)	2256, 2288, 2340, 2372
FaqI	GGGAC	3 cut(s)	325, 2082, 2533
FauI	CCCGC	2 cut(s)	146, 350
FauNDI	CATATG	2 cut(s)	1171, 2407
FbaI	TGATCA	1 cut(s)	2158
FblI	GTMKAC	1 cut(s)	1676
FokI	GGATG	8 cut(s)	272, 1151, 1178, 1231, 2294, 2408, 2513, 2530
FspBI	CTAG	3 cut(s)	1182, 1199, 1727
GlaI	GCGC	1 cut(s)	2566
GsuI	CTGGAG	1 cut(s)	284
HaeII	RGCGCY	1 cut(s)	2568
HaeIII	GGCC	2 cut(s)	11, 1485
HapII	CCGG	6 cut(s)	425, 920, 1031, 1834, 2393, 2498
HgaI	GACGC	1 cut(s)	1520
HhaI	GCGC	1 cut(s)	2567
Hin6I	GCGC	1 cut(s)	2565
HinP1I	GCGC	1 cut(s)	2565
HindIII	AAGCTT	2 cut(s)	854, 995
HinfI	GANTC	7 cut(s)	578, 673, 688, 1830, 1863, 2419, 2490
HpaII	CCGG	6 cut(s)	425, 920, 1031, 1834, 2393, 2498
HphI	GGTGA	8 cut(s)	127, 352, 386, 779, 946, 1681, 2036, 2188
Hpy166II	GTNNAC	9 cut(s)	280, 680, 716, 733, 1210, 1630, 1677, 2044, 2078
Hpy188III	TCNNGA	9 cut(s)	692, 920, 1031, 1435, 1834, 1871, 2180, 2416, 2537
Hpy8I	GTNNAC	9 cut(s)	280, 680, 716, 733, 1210, 1630, 1677, 2044, 2078
Hpy99I	CGWCG	1 cut(s)	317
HpyCH4III	ACNGT	8 cut(s)	515, 965, 1064, 1249, 1259, 1681, 2075, 2471
HpyCH4IV	ACGT	3 cut(s)	276, 959, 1673
HpyF10VI	GCNNNNNNNGC	4 cut(s)	590, 617, 677, 2357
HpyF3I	CTNAG	3 cut(s)	908, 1517, 2021
HpySE526I	ACGT	3 cut(s)	276, 959, 1673
HspAI	GCGC	1 cut(s)	2565
Kpn2I	TCCGGA	3 cut(s)	919, 1030, 1833
Ksp22I	TGATCA	1 cut(s)	2158
Kzo9I	GATC	6 cut(s)	970, 1233, 2106, 2158, 2176, 2412
LmnI	GCTCC	5 cut(s)	76, 427, 881, 922, 1595
Lsp1109I	GCAGC	4 cut(s)	472, 1790, 1918, 2363
MaeI	CTAG	3 cut(s)	1182, 1199, 1727
MaeII	ACGT	3 cut(s)	276, 959, 1673
MalI	GATC	6 cut(s)	972, 1235, 2108, 2160, 2178, 2414
MbiI	CCGCTC	2 cut(s)	147, 884
MboI	GATC	6 cut(s)	970, 1233, 2106, 2158, 2176, 2412
MflI	RGATCY	3 cut(s)	1233, 2176, 2412
MhlI	GDGCHC	1 cut(s)	682
MlsI	TGGCCA	1 cut(s)	11
MluNI	TGGCCA	1 cut(s)	11
MlyI	GAGTC	1 cut(s)	1872
MmeI	TCCRAC	6 cut(s)	330, 555, 960, 1065, 1116, 2419
Mox20I	TGGCCA	1 cut(s)	11
Mph1103I	ATGCAT	2 cut(s)	1171, 1411
MroI	TCCGGA	3 cut(s)	919, 1030, 1833
MroXI	GAANNNNTTC	1 cut(s)	2040
MscI	TGGCCA	1 cut(s)	11
MslI	CAYNNNNRTG	1 cut(s)	1901
Msp20I	TGGCCA	1 cut(s)	11
MspI	CCGG	6 cut(s)	425, 920, 1031, 1834, 2393, 2498
Mva1269I	GAATGC	1 cut(s)	1050
MwoI	GCNNNNNNNGC	4 cut(s)	590, 617, 677, 2357
NcoI	CCATGG	2 cut(s)	447, 2457
NdeI	CATATG	2 cut(s)	1171, 2407
NdeII	GATC	6 cut(s)	970, 1233, 2106, 2158, 2176, 2412
NlaIV	GGNNCC	8 cut(s)	341, 627, 924, 1591, 2178, 2391, 2414, 2549
NmeAIII	GCCGAG	1 cut(s)	333
NmuCI	GTSAC	4 cut(s)	934, 1508, 1669, 2194
NsiI	ATGCAT	2 cut(s)	1171, 1411
NspI	RCATGY	1 cut(s)	686
PciI	ACATGT	1 cut(s)	682
PctI	GAATGC	1 cut(s)	1050
PdmI	GAANNNNTTC	1 cut(s)	2040
PfeI	GAWTC	6 cut(s)	578, 673, 688, 1830, 2419, 2490
PflFI	GACNNNGTC	1 cut(s)	311
PleI	GAGTC	1 cut(s)	1871
PpsI	GAGTC	1 cut(s)	1871
Ppu21I	YACGTR	1 cut(s)	960
PscI	ACATGT	1 cut(s)	682
PshBI	ATTAAT	2 cut(s)	1539, 1899
PsiI	TTATAA	2 cut(s)	1268, 1887
PspEI	GGTNACC	1 cut(s)	2194
PspN4I	GGNNCC	8 cut(s)	341, 627, 924, 1591, 2178, 2391, 2414, 2549
PspPI	GGNCC	3 cut(s)	339, 917, 2547
PsrI	GAACNNNNNNTAC	2 cut(s)	499, 531
PsuI	RGATCY	3 cut(s)	1233, 2176, 2412
PsyI	GACNNNGTC	1 cut(s)	311
RsaI	GTAC	6 cut(s)	453, 466, 962, 1211, 1631, 2468
RsaNI	GTAC	6 cut(s)	452, 465, 961, 1210, 1630, 2467
RseI	CAYNNNNRTG	1 cut(s)	1901
Sau3AI	GATC	6 cut(s)	970, 1233, 2106, 2158, 2176, 2412
Sau96I	GGNCC	3 cut(s)	339, 917, 2547
SchI	GAGTC	1 cut(s)	1872
SduI	GDGCHC	1 cut(s)	682
SfcI	CTRYAG	2 cut(s)	1594, 2200
SinI	GGWCC	3 cut(s)	339, 917, 2547
SmiMI	CAYNNNNRTG	1 cut(s)	1901
SpeI	ACTAGT	1 cut(s)	1726
SspMI	CTAG	3 cut(s)	1182, 1199, 1727
StyI	CCWWGG	2 cut(s)	447, 2457
TaaI	ACNGT	8 cut(s)	515, 965, 1064, 1249, 1259, 1681, 2075, 2471
TaiI	ACGT	3 cut(s)	279, 962, 1676
TaqI	TCGA	6 cut(s)	333, 441, 1099, 1690, 1861, 2109
TaqII	GACCGA	2 cut(s)	1307, 2535
TatI	WGTACW	2 cut(s)	1209, 1629
TauI	GCSGC	6 cut(s)	144, 147, 320, 373, 411, 631
TfiI	GAWTC	6 cut(s)	578, 673, 688, 1830, 2419, 2490
TscAI	CASTG	6 cut(s)	807, 1252, 1264, 2070, 2078, 2151
TseFI	GTSAC	4 cut(s)	934, 1508, 1669, 2194
TseI	GCWGC	4 cut(s)	485, 1803, 1931, 2351
Tsp45I	GTSAC	4 cut(s)	934, 1508, 1669, 2194
TspRI	CASTG	6 cut(s)	807, 1252, 1264, 2070, 2078, 2151
Tth111I	GACNNNGTC	1 cut(s)	311
VneI	GTGCAC	1 cut(s)	678
VpaK11BI	GGWCC	3 cut(s)	339, 917, 2547
VspI	ATTAAT	2 cut(s)	1539, 1899
XapI	RAATTY	8 cut(s)	499, 520, 553, 648, 787, 1186, 1396, 2541
XceI	RCATGY	1 cut(s)	686
XmiI	GTMKAC	1 cut(s)	1676
XmnI	GAANNNNTTC	1 cut(s)	2040
XspI	CTAG	3 cut(s)	1182, 1199, 1727
Zsp2I	ATGCAT	2 cut(s)	1171, 1411

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.