Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003184.1

Orthogroup ID

OG0009730

Physical Location & Seq

Genomic Coordinates Forward (+)

1838 .. 3726

Gene Structure 1889 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

atggtggctggctcatctcggaggtgtagcctggcattgactcgtcggaggaaggcgaagaagatggtggttacagcaaagaaatctaaggaggatctgaaggaagcctgcagaacatcgggttcgggagcgaagaagagtgatgggtcggagtttttggaaaacgggtgggatccggagctcagctttcccatcacatttcagtttattgtagaagagtcaaagaacagcagggatccacctattggttttgctttaataagacctccaagacaccatgcaatttcaaagggtctgatggggttttgtgtgtttggaaatattgcaattgcagctcattatgctcaacgtgcacatggcttgaagggtgtctttataattaattttgatgttcaccacgggaatgggacaaatgatgctttctatgaggatccagatatattcttcaacctccacgacaccatgcaatttcaaagggtctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003824 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006464 GO:0006476 GO:0006807 GO:0008092 GO:0008150 GO:0008152 GO:0009507 GO:0009536 GO:0009987 GO:0015631 GO:0016787 GO:0016810 GO:0016811 GO:0019213 GO:0019538 GO:0019899 GO:0019902 GO:0019903 GO:0033558 GO:0035601 GO:0036211 GO:0042903 GO:0043014 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0043621 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044444 GO:0044464 GO:0048487 GO:0051721 GO:0071704 GO:0090042 GO:0098732 GO:0140096 GO:1901564

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Hist_deacetyl

Protein Analysis

160

Amino Acids

17.89

Weight (kDa)

9.4

Isoelectric Point (pI)

38.69

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Hist_deacetyl	PF00850	82 - 154	1e-26	Histone deacetylase domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009730)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr1g0346631 RchiOBHm_Chr6g0252021 RchiOBHm_Chr6g0304611
rosa_multiflora	Rmu_sc0002351.1_g000007 Rmu_sc0003184.1_g000002 Rmu_sc0006376.1_g000007 Rmu_sc0006898.1_g000006 Rmu_sc0010612.1_g000002
rosa_roxburghii	Rroxscaffold_2G00102900 Rroxscaffold_2G00109440 Rroxscaffold_3G00235090 Rroxscaffold_3G00238760 Rroxscaffold_4G00282250 Rroxscaffold_4G00321940 Rroxscaffold_5G00352030 Rroxscaffold_7G00196880
rosa_rugosa	Rorug02G0426000 Rorug04G0211700 Rorug04G0211800 Rorug04G0211900
rosa_samantha	Rh4CG277400 Rh5AG273500

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	377
AccB7I	CCANNNNNTGG	1 cut(s)	245
AccIII	TCCGGA	1 cut(s)	175
AclWI	GGATC	7 cut(s)	102, 167, 180, 230, 243, 425, 438
AcuI	CTGAAG	1 cut(s)	119
AfiI	CCNNNNNNNGG	1 cut(s)	245
AgsI	TTSAA	4 cut(s)	288, 364, 448, 473
AjnI	CCWGG	1 cut(s)	30
AluBI	AGCT	3 cut(s)	181, 186, 335
AluI	AGCT	3 cut(s)	181, 186, 335
Alw21I	GWGCWC	2 cut(s)	183, 355
Alw44I	GTGCAC	1 cut(s)	351
AlwI	GGATC	7 cut(s)	102, 167, 180, 230, 243, 425, 438
Aor13HI	TCCGGA	1 cut(s)	175
ApaLI	GTGCAC	1 cut(s)	351
ApeKI	GCWGC	1 cut(s)	332
AseI	ATTAAT	1 cut(s)	381
AsuHPI	GGTGA	1 cut(s)	386
BaeGI	GKGCMC	1 cut(s)	355
BamHI	GGATCC	3 cut(s)	172, 235, 430
BanII	GRGCYC	1 cut(s)	183
Bbv12I	GWGCWC	2 cut(s)	183, 355
BbvI	GCAGC	1 cut(s)	344
BccI	CCATC	4 cut(s)	58, 137, 200, 292
BciT130I	CCWGG	1 cut(s)	32
BfmI	CTRYAG	1 cut(s)	109
BisI	GCNGC	1 cut(s)	333
BlpI	GCTNAGC	1 cut(s)	182
BlsI	GCNGC	1 cut(s)	334
Bme1390I	CCNGG	1 cut(s)	32
BmiI	GGNNCC	3 cut(s)	174, 237, 432
BmrFI	CCNGG	1 cut(s)	32
BmsI	GCATC	1 cut(s)	406
Bpu1102I	GCTNAGC	1 cut(s)	182
BsaJI	CCNNGG	1 cut(s)	397
BsaWI	WCCGGW	1 cut(s)	175
Bsc4I	CCNNNNNNNGG	1 cut(s)	245
BseAI	TCCGGA	1 cut(s)	175
BseBI	CCWGG	1 cut(s)	32
BseDI	CCNNGG	1 cut(s)	397
BseLI	CCNNNNNNNGG	1 cut(s)	245
BseMII	CTCAG	1 cut(s)	196
BseSI	GKGCMC	1 cut(s)	355
BseXI	GCAGC	1 cut(s)	344
BsiHKAI	GWGCWC	2 cut(s)	183, 355
BsiSI	CCGG	1 cut(s)	176
BslFI	GGGAC	1 cut(s)	421
BslI	CCNNNNNNNGG	1 cut(s)	245
BsmFI	GGGAC	1 cut(s)	421
Bsp1286I	GDGCHC	2 cut(s)	183, 355
Bsp13I	TCCGGA	1 cut(s)	175
Bsp143I	GATC	4 cut(s)	94, 172, 235, 430
Bsp1720I	GCTNAGC	1 cut(s)	182
BspCNI	CTCAG	1 cut(s)	195
BspEI	TCCGGA	1 cut(s)	175
BspLI	GGNNCC	3 cut(s)	174, 237, 432
BspMAI	CTGCAG	1 cut(s)	113
BspPI	GGATC	7 cut(s)	102, 167, 180, 230, 243, 425, 438
BssECI	CCNNGG	1 cut(s)	397
BssMI	GATC	4 cut(s)	94, 172, 235, 430
Bst2UI	CCWGG	1 cut(s)	32
Bst6I	CTCTTC	2 cut(s)	131, 210
BstC8I	GCNNGC	2 cut(s)	10, 109
BstDEI	CTNAG	2 cut(s)	87, 182
BstDSI	CCRYGG	1 cut(s)	397
BstKTI	GATC	4 cut(s)	97, 175, 238, 433
BstMBI	GATC	4 cut(s)	94, 172, 235, 430
BstMWI	GCNNNNNNNGC	3 cut(s)	332, 341, 350
BstNI	CCWGG	1 cut(s)	32
BstSCI	CCNGG	1 cut(s)	30
BstSFI	CTRYAG	1 cut(s)	109
BstSLI	GKGCMC	1 cut(s)	355
BstV1I	GCAGC	1 cut(s)	344
BstX2I	RGATCY	4 cut(s)	94, 172, 235, 430
BstXI	CCANNNNNNTGG	1 cut(s)	404
BstYI	RGATCY	4 cut(s)	94, 172, 235, 430
BtgI	CCRYGG	1 cut(s)	397
Cac8I	GCNNGC	2 cut(s)	10, 109
CviAII	CATG	3 cut(s)	278, 356, 463
CviJI	RGCY	8 cut(s)	8, 12, 30, 107, 181, 186, 335, 360
CviKI_1	RGCY	8 cut(s)	8, 12, 30, 107, 181, 186, 335, 360
DdeI	CTNAG	2 cut(s)	87, 182
DpnI	GATC	4 cut(s)	96, 174, 237, 432
DpnII	GATC	4 cut(s)	94, 172, 235, 430
Eam1104I	CTCTTC	2 cut(s)	131, 210
EarI	CTCTTC	2 cut(s)	131, 210
Ecl136II	GAGCTC	1 cut(s)	181
Eco24I	GRGCYC	1 cut(s)	183
Eco53kI	GAGCTC	1 cut(s)	181
Eco57I	CTGAAG	1 cut(s)	119
EcoICRI	GAGCTC	1 cut(s)	181
EcoRII	CCWGG	1 cut(s)	30
EcoT38I	GRGCYC	1 cut(s)	183
FaeI	CATG	3 cut(s)	281, 359, 466
FaiI	YATR	7 cut(s)	279, 342, 357, 377, 426, 440, 464
FalI	AAGNNNNNCTT	2 cut(s)	356, 388
FaqI	GGGAC	1 cut(s)	421
FatI	CATG	3 cut(s)	277, 355, 462
Fnu4HI	GCNGC	1 cut(s)	333
FriOI	GRGCYC	1 cut(s)	183
Fsp4HI	GCNGC	1 cut(s)	333
GluI	GCNGC	1 cut(s)	333
HapII	CCGG	1 cut(s)	176
Hin1II	CATG	3 cut(s)	281, 359, 466
HinfI	GANTC	2 cut(s)	40, 218
HpaII	CCGG	1 cut(s)	176
HphI	GGTGA	1 cut(s)	386
Hpy166II	GTNNAC	2 cut(s)	353, 394
Hpy188I	TCNGA	5 cut(s)	21, 48, 99, 151, 297
Hpy188III	TCNNGA	3 cut(s)	126, 176, 434
Hpy8I	GTNNAC	2 cut(s)	353, 394
Hpy99I	CGWCG	1 cut(s)	48
HpyAV	CCTTC	3 cut(s)	46, 94, 358
HpyCH4IV	ACGT	1 cut(s)	349
HpyCH4V	TGCA	6 cut(s)	111, 281, 326, 332, 353, 466
HpyF10VI	GCNNNNNNNGC	3 cut(s)	332, 341, 350
HpyF3I	CTNAG	2 cut(s)	87, 182
HpySE526I	ACGT	1 cut(s)	349
Hsp92II	CATG	3 cut(s)	281, 359, 466
Kpn2I	TCCGGA	1 cut(s)	175
Kzo9I	GATC	4 cut(s)	94, 172, 235, 430
LmnI	GCTCC	2 cut(s)	128, 178
LpnPI	CCDG	6 cut(s)	17, 44, 121, 189, 217, 447
Lsp1109I	GCAGC	1 cut(s)	344
LweI	GCATC	1 cut(s)	406
MaeII	ACGT	1 cut(s)	349
MaeIII	GTNAC	1 cut(s)	70
MalI	GATC	4 cut(s)	96, 174, 237, 432
MboI	GATC	4 cut(s)	94, 172, 235, 430
MboII	GAAGA	6 cut(s)	70, 73, 145, 148, 227, 436
MfeI	CAATTG	1 cut(s)	327
MflI	RGATCY	4 cut(s)	94, 172, 235, 430
MhlI	GDGCHC	2 cut(s)	183, 355
MluCI	AATT	5 cut(s)	282, 327, 378, 382, 467
MlyI	GAGTC	2 cut(s)	34, 227
MmeI	TCCRAC	2 cut(s)	26, 129
MnlI	CCTC	6 cut(s)	15, 42, 85, 276, 421, 461
MroI	TCCGGA	1 cut(s)	175
MseI	TTAA	2 cut(s)	257, 381
MslI	CAYNNNNRTG	1 cut(s)	402
MspI	CCGG	1 cut(s)	176
MspR9I	CCNGG	1 cut(s)	32
MunI	CAATTG	1 cut(s)	327
MvaI	CCWGG	1 cut(s)	32
MwoI	GCNNNNNNNGC	3 cut(s)	332, 341, 350
NdeII	GATC	4 cut(s)	94, 172, 235, 430
NlaIII	CATG	3 cut(s)	281, 359, 466
NlaIV	GGNNCC	3 cut(s)	174, 237, 432
PflMI	CCANNNNNTGG	1 cut(s)	245
PkrI	GCNGC	1 cut(s)	334
PleI	GAGTC	2 cut(s)	34, 226
PpsI	GAGTC	2 cut(s)	34, 226
PshBI	ATTAAT	1 cut(s)	381
PsiI	TTATAA	1 cut(s)	377
Psp124BI	GAGCTC	1 cut(s)	183
Psp6I	CCWGG	1 cut(s)	30
PspGI	CCWGG	1 cut(s)	30
PspN4I	GGNNCC	3 cut(s)	174, 237, 432
PstI	CTGCAG	1 cut(s)	113
PsuI	RGATCY	4 cut(s)	94, 172, 235, 430
RseI	CAYNNNNRTG	1 cut(s)	402
SacI	GAGCTC	1 cut(s)	183
SaqAI	TTAA	2 cut(s)	257, 381
SatI	GCNGC	1 cut(s)	333
Sau3AI	GATC	4 cut(s)	94, 172, 235, 430
SchI	GAGTC	2 cut(s)	34, 227
ScrFI	CCNGG	1 cut(s)	32
SduI	GDGCHC	2 cut(s)	183, 355
SetI	ASST	8 cut(s)	26, 183, 188, 244, 268, 337, 352, 453
SfaNI	GCATC	1 cut(s)	406
SfcI	CTRYAG	1 cut(s)	109
SmiMI	CAYNNNNRTG	1 cut(s)	402
Sse9I	AATT	5 cut(s)	282, 327, 378, 382, 467
SspI	AATATT	1 cut(s)	322
SstI	GAGCTC	1 cut(s)	183
StyD4I	CCNGG	1 cut(s)	30
TaiI	ACGT	1 cut(s)	352
TasI	AATT	5 cut(s)	282, 327, 378, 382, 467
Tru1I	TTAA	2 cut(s)	257, 381
Tru9I	TTAA	2 cut(s)	257, 381
TseI	GCWGC	1 cut(s)	332
Van91I	CCANNNNNTGG	1 cut(s)	245
VneI	GTGCAC	1 cut(s)	351
VspI	ATTAAT	1 cut(s)	381

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.