Rmu_sc0003389.1_g000002

Pre-mRNA-splicing factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003389.1
OG0004906
Physical Location & Seq
Forward (+)
7566 .. 10983
3418 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 441 bp
atggtagatgatccgacttgttcaaacattccgattcctaatataaggaagcaattgcagaacccagtcaaagctaagcttttattctccatacatgcgccggcgctgcccacaaccgcactcttcacctccgaagcttctccgattcgtctccgaaaatttgcagcagccaatcttttggtctcaaatatgagtggacgattttctcgcacaatttatgtcggcaacctaccctcagatataagagaacgggaggttgaagatttattctacaagtatggccgcattttggatattgaattgaaggttccacctcgccctccatgctatagttttgttgagtttgagagttctcgggatgcagaagatgcaattaggggcattgccaagatcaatgtcaagatcaaggtcagggtctccccgcccggcgcggtcagatag

Protein Analysis

146

Amino Acids

16.35

Weight (kDa)

9.69

Isoelectric Point (pI)

50.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 72 - 127 5.3e-15 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 431
AciI CCGC 4 cut(s) 117, 283, 422, 431
AclWI GGATC 1 cut(s) 5
AcoI YGGCCR 1 cut(s) 280
AcsI RAATTY 1 cut(s) 158
AfiI CCNNNNNNNGG 1 cut(s) 289
AgsI TTSAA 4 cut(s) 24, 260, 299, 304
AluBI AGCT 3 cut(s) 74, 79, 137
AluI AGCT 3 cut(s) 74, 79, 137
Alw26I GTCTC 3 cut(s) 155, 187, 421
AlwI GGATC 1 cut(s) 5
Ama87I CYCGRG 1 cut(s) 354
AoxI GGCC 1 cut(s) 280
ApeKI GCWGC 3 cut(s) 106, 164, 167
ApoI RAATTY 1 cut(s) 158
AspLEI GCGC 3 cut(s) 100, 106, 431
AsuC2I CCSGG 1 cut(s) 426
AsuHPI GGTGA 1 cut(s) 118
AvaI CYCGRG 1 cut(s) 354
BbvI GCAGC 3 cut(s) 93, 176, 179
BcnI CCSGG 1 cut(s) 426
BcoDI GTCTC 3 cut(s) 155, 187, 421
BfmI CTRYAG 1 cut(s) 328
BfoI RGCGCY 1 cut(s) 107
BisI GCNGC 4 cut(s) 107, 165, 168, 283
BlpI GCTNAGC 1 cut(s) 75
BlsI GCNGC 4 cut(s) 108, 166, 169, 284
Bme1390I CCNGG 1 cut(s) 426
BmeT110I CYCGRG 1 cut(s) 354
BmiI GGNNCC 1 cut(s) 309
BmrFI CCNGG 1 cut(s) 426
BmrI ACTGGG 1 cut(s) 59
BmsI GCATC 2 cut(s) 349, 358
BmuI ACTGGG 1 cut(s) 59
Bpu1102I GCTNAGC 1 cut(s) 75
BpuMI CCSGG 1 cut(s) 426
BsaI GGTCTC 2 cut(s) 187, 421
Bsc4I CCNNNNNNNGG 1 cut(s) 289
Bse118I RCCGGY 1 cut(s) 100
Bse1I ACTGG 1 cut(s) 65
Bse3DI GCAATG 1 cut(s) 381
BseGI GGATG 1 cut(s) 364
BseLI CCNNNNNNNGG 1 cut(s) 289
BseMI GCAATG 1 cut(s) 381
BseMII CTCAG 1 cut(s) 249
BseNI ACTGG 1 cut(s) 65
BseXI GCAGC 3 cut(s) 93, 176, 179
Bsh1236I CGCG 1 cut(s) 431
BshFI GGCC 1 cut(s) 282
BsiHKCI CYCGRG 1 cut(s) 354
BsiSI CCGG 2 cut(s) 101, 426
BslI CCNNNNNNNGG 1 cut(s) 289
BsmAI GTCTC 3 cut(s) 155, 187, 421
BsmBI CGTCTC 1 cut(s) 155
BsnI GGCC 1 cut(s) 282
Bso31I GGTCTC 2 cut(s) 187, 421
BsoBI CYCGRG 1 cut(s) 354
Bsp143I GATC 3 cut(s) 10, 390, 402
Bsp1720I GCTNAGC 1 cut(s) 75
BspACI CCGC 4 cut(s) 117, 283, 422, 431
BspANI GGCC 1 cut(s) 282
BspCNI CTCAG 1 cut(s) 248
BspFNI CGCG 1 cut(s) 431
BspLI GGNNCC 1 cut(s) 309
BspPI GGATC 1 cut(s) 5
BspTNI GGTCTC 2 cut(s) 187, 421
BsrDI GCAATG 1 cut(s) 381
BsrFI RCCGGY 1 cut(s) 100
BsrI ACTGG 1 cut(s) 65
BssAI RCCGGY 1 cut(s) 100
BssMI GATC 3 cut(s) 10, 390, 402
Bst6I CTCTTC 1 cut(s) 128
BstAPI GCANNNNNTGC 1 cut(s) 368
BstC8I GCNNGC 1 cut(s) 102
BstDEI CTNAG 2 cut(s) 75, 235
BstF5I GGATG 1 cut(s) 364
BstFNI CGCG 1 cut(s) 431
BstH2I RGCGCY 1 cut(s) 107
BstHHI GCGC 3 cut(s) 100, 106, 431
BstKTI GATC 3 cut(s) 13, 393, 405
BstMAI GTCTC 3 cut(s) 155, 187, 421
BstMBI GATC 3 cut(s) 10, 390, 402
BstMWI GCNNNNNNNGC 3 cut(s) 106, 324, 368
BstNSI RCATGY 1 cut(s) 98
BstSCI CCNGG 1 cut(s) 424
BstSFI CTRYAG 1 cut(s) 328
BstUI CGCG 1 cut(s) 431
BstV1I GCAGC 3 cut(s) 93, 176, 179
BstXI CCANNNNNNTGG 1 cut(s) 178
BsuRI GGCC 1 cut(s) 282
BtsCI GGATG 1 cut(s) 364
Cac8I GCNNGC 1 cut(s) 102
CfoI GCGC 3 cut(s) 100, 106, 431
Cfr10I RCCGGY 1 cut(s) 100
CviAII CATG 2 cut(s) 95, 324
CviJI RGCY 5 cut(s) 74, 79, 137, 170, 282
CviKI_1 RGCY 5 cut(s) 74, 79, 137, 170, 282
DdeI CTNAG 2 cut(s) 75, 235
DpnI GATC 3 cut(s) 12, 392, 404
DpnII GATC 3 cut(s) 10, 390, 402
EaeI YGGCCR 1 cut(s) 280
Eam1104I CTCTTC 1 cut(s) 128
EarI CTCTTC 1 cut(s) 128
Eco31I GGTCTC 2 cut(s) 187, 421
Eco88I CYCGRG 1 cut(s) 354
Esp3I CGTCTC 1 cut(s) 155
FaeI CATG 2 cut(s) 98, 327
FaiI YATR 9 cut(s) 44, 92, 96, 191, 219, 242, 279, 325, 330
FalI AAGNNNNNCTT 2 cut(s) 63, 95
FatI CATG 2 cut(s) 94, 323
FauI CCCGC 1 cut(s) 429
Fnu4HI GCNGC 4 cut(s) 107, 165, 168, 283
FokI GGATG 1 cut(s) 371
Fsp4HI GCNGC 4 cut(s) 107, 165, 168, 283
GlaI GCGC 3 cut(s) 99, 105, 430
GluI GCNGC 4 cut(s) 107, 165, 168, 283
HaeII RGCGCY 1 cut(s) 107
HaeIII GGCC 1 cut(s) 282
HapII CCGG 2 cut(s) 101, 426
HhaI GCGC 3 cut(s) 100, 106, 431
Hin1II CATG 2 cut(s) 98, 327
Hin6I GCGC 3 cut(s) 98, 104, 429
HinP1I GCGC 3 cut(s) 98, 104, 429
HindIII AAGCTT 2 cut(s) 77, 135
HinfI GANTC 2 cut(s) 34, 145
HpaII CCGG 2 cut(s) 101, 426
HphI GGTGA 1 cut(s) 118
Hpy166II GTNNAC 1 cut(s) 197
Hpy188I TCNGA 7 cut(s) 15, 33, 133, 144, 155, 238, 437
Hpy188III TCNNGA 2 cut(s) 356, 400
Hpy8I GTNNAC 1 cut(s) 197
HpyAV CCTTC 1 cut(s) 298
HpyCH4V TGCA 4 cut(s) 58, 164, 362, 371
HpyF10VI GCNNNNNNNGC 3 cut(s) 106, 324, 368
HpyF3I CTNAG 2 cut(s) 75, 235
Hsp92II CATG 2 cut(s) 98, 327
HspAI GCGC 3 cut(s) 98, 104, 429
KroI GCCGGC 1 cut(s) 100
KroNI GCCGGC 1 cut(s) 102
Kzo9I GATC 3 cut(s) 10, 390, 402
LpnPI CCDG 3 cut(s) 78, 114, 397
Lsp1109I GCAGC 3 cut(s) 93, 176, 179
LweI GCATC 2 cut(s) 349, 358
MalI GATC 3 cut(s) 12, 392, 404
MboI GATC 3 cut(s) 10, 390, 402
MboII GAAGA 3 cut(s) 115, 272, 377
MfeI CAATTG 1 cut(s) 53
MluCI AATT 5 cut(s) 53, 158, 213, 299, 372
MmeI TCCRAC 1 cut(s) 38
MnlI CCTC 5 cut(s) 139, 244, 247, 324, 330
MreI CGCCGGCG 1 cut(s) 100
MroNI GCCGGC 1 cut(s) 100
MspI CCGG 2 cut(s) 101, 426
MspR9I CCNGG 1 cut(s) 426
MunI CAATTG 1 cut(s) 53
MvnI CGCG 1 cut(s) 431
MwoI GCNNNNNNNGC 3 cut(s) 106, 324, 368
NaeI GCCGGC 1 cut(s) 102
NciI CCSGG 1 cut(s) 426
NdeII GATC 3 cut(s) 10, 390, 402
NgoMIV GCCGGC 1 cut(s) 100
NlaIII CATG 2 cut(s) 98, 327
NlaIV GGNNCC 1 cut(s) 309
NspI RCATGY 1 cut(s) 98
PdiI GCCGGC 1 cut(s) 102
PfeI GAWTC 2 cut(s) 34, 145
PkrI GCNGC 4 cut(s) 108, 166, 169, 284
PspN4I GGNNCC 1 cut(s) 309
SatI GCNGC 4 cut(s) 107, 165, 168, 283
Sau3AI GATC 3 cut(s) 10, 390, 402
ScrFI CCNGG 1 cut(s) 426
SetI ASST 9 cut(s) 76, 81, 131, 139, 231, 258, 309, 316, 411
SfaNI GCATC 2 cut(s) 349, 358
SfcI CTRYAG 1 cut(s) 328
SgrAI CRCCGGYG 1 cut(s) 100
Sse9I AATT 5 cut(s) 53, 158, 213, 299, 372
SsiI CCGC 4 cut(s) 117, 283, 422, 431
StyD4I CCNGG 1 cut(s) 424
TasI AATT 5 cut(s) 53, 158, 213, 299, 372
TauI GCSGC 1 cut(s) 285
TfiI GAWTC 2 cut(s) 34, 145
TseI GCWGC 3 cut(s) 106, 164, 167
XapI RAATTY 1 cut(s) 158
XceI RCATGY 1 cut(s) 98
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.