Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003469.1

Orthogroup ID

OG0007491

Physical Location & Seq

Genomic Coordinates Forward (+)

13290 .. 15381

Gene Structure 2092 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1035 bp

atggtaaaagatacactgaaatggttaatggtgattgctgttttggtggtttcaatatcacaatcttgcgttcatggagcgccacaagtaccttgcttcttcattttcggtgattcattggccgataacggcaataacaacctcctactgactttggccaaagtgaactatgcgccgtacggaattgattatcccgctgaatttctgggttttgagaatcccatcccaccatttgcaactaccaacatacaggacattgttaaaggtcttaattatgcatctggcgccgcagggattcgagaagaaactggctccaatttgggtgatcacatcagctttgaccggcagttactgaatcaccaaatcacaaccttgcgcattgctacaatacttcgagcaaatacactacaaaccttgcagtacttgaacaagtgcctatacacagtgggaatgggtaacaatgattacattaacaattacttcatgcctcagttttatcccaccagcaagagatacacccctgaacaatatgcttcagttcttattgaccaatatactagccaaatactgactttgtacaacaagtatggagcaaggaaggttgccttggttggactgggactcataggttgcactcctaatgcaatttcgaaaacgaaggggatcacatgtgtagatgaattgaacagtgcggcccagcttttcaaccaaaagcttgtacctcttgttgatcagctcaataccaatttgactgatgcaaaattcatctatgtcaacagtactggaatgagttctggggatcctacatctgttggattcaaggttttgaatgttgggtgttgtccggtgaatagtgttggccaatgtattcgttccggaactccatgccagaataggagtgagtatgtgttctgggactcattccaccctactgaggcatcgaaccgaattactgcattcagaacatacgaaagtgttgaccccacggataattatcctatggatgtcagtcacttagttcagcttaaactataa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005576 GO:0005618 GO:0005622 GO:0005623 GO:0005737 GO:0009507 GO:0009534 GO:0009536 GO:0009579 GO:0030312 GO:0031976 GO:0031984 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0048046 GO:0071944

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Lipase_GDSL

Protein Analysis

344

Amino Acids

37.98

Weight (kDa)

6.2

Isoelectric Point (pI)

30.29

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lipase_GDSL	PF00657	34 - 319	5.8e-28	GDSL-like Lipase/Acylhydrolase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007491)

Species	Orthologous Gene IDs
fragaria_vesca	FvH4_3g06710 FvH4_3g06710 FvH4_3g06710 FvH4_3g06710 FvH4_3g06710
malus_domestica	MD00G1093900.v1.1 MD10G1270800.v1.1 MD10G1270900.v1.1
prunus_persica	Prupe.4G070700_v2.0.a1 Prupe.4G070900_v2.0.a1
rosa_chinensis	RchiOBHm_Chr5g0012441 RchiOBHm_Chr5g0012451
rosa_laevigata	RLG00000031914 RLG00000031916
rosa_multiflora	Rmu_sc0003469.1_g000005
rosa_roxburghii	Rroxscaffold_1G00064210 Rroxscaffold_1G00064220 Rroxscaffold_1G00064230
rosa_rugosa	Rorug05G0001500
rosa_samantha	Rh5AG095700 Rh5BG091900 Rh5BG092000 Rh5CG104700 Rh5DG091300
rosa_wichuraiana	Rw5G008370

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	377
AccB1I	GGYRCC	1 cut(s)	284
AccIII	TCCGGA	1 cut(s)	875
AciI	CCGC	3 cut(s)	195, 288, 692
AclWI	GGATC	3 cut(s)	671, 794, 807
AcoI	YGGCCR	3 cut(s)	120, 156, 859
AcsI	RAATTY	2 cut(s)	200, 761
AcuI	CTGAAG	1 cut(s)	519
AcyI	GRCGYC	1 cut(s)	285
AfaI	GTAC	6 cut(s)	90, 179, 422, 578, 720, 781
AfiI	CCNNNNNNNGG	1 cut(s)	934
AflIII	ACRYGT	1 cut(s)	668
AgsI	TTSAA	6 cut(s)	54, 427, 685, 706, 820, 829
AjuI	GAANNNNNNNTTGG	2 cut(s)	590, 622
AluBI	AGCT	5 cut(s)	336, 700, 715, 736, 1024
AluI	AGCT	5 cut(s)	336, 700, 715, 736, 1024
AlwI	GGATC	3 cut(s)	671, 794, 807
AlwNI	CAGNNNCTG	1 cut(s)	352
Aor13HI	TCCGGA	1 cut(s)	875
AoxI	GGCC	4 cut(s)	120, 156, 693, 859
ApoI	RAATTY	2 cut(s)	200, 761
Asp700I	GAANNNNTTC	1 cut(s)	790
AspLEI	GCGC	4 cut(s)	82, 175, 287, 378
AspS9I	GGNCC	1 cut(s)	694
AsuHPI	GGTGA	5 cut(s)	43, 122, 335, 350, 859
AsuII	TTCGAA	1 cut(s)	650
BalI	TGGCCA	2 cut(s)	158, 861
BamHI	GGATCC	1 cut(s)	799
BanI	GGYRCC	1 cut(s)	284
BccI	CCATC	1 cut(s)	230
BceAI	ACGGC	2 cut(s)	145, 160
BclI	TGATCA	2 cut(s)	325, 730
BfaI	CTAG	1 cut(s)	558
BfoI	RGCGCY	2 cut(s)	83, 288
BisI	GCNGC	2 cut(s)	288, 693
BlsI	GCNGC	2 cut(s)	289, 694
BmcAI	AGTACT	2 cut(s)	422, 781
BmgT120I	GGNCC	1 cut(s)	694
BmiI	GGNNCC	3 cut(s)	286, 313, 801
BmrI	ACTGGG	1 cut(s)	626
BmsI	GCATC	3 cut(s)	287, 745, 947
BmuI	ACTGGG	1 cut(s)	626
Bpu14I	TTCGAA	1 cut(s)	650
BsaBI	GATNNNNATC	1 cut(s)	993
BsaHI	GRCGYC	1 cut(s)	285
BsaJI	CCNNGG	2 cut(s)	606, 984
BsaWI	WCCGGW	2 cut(s)	844, 875
Bsc4I	CCNNNNNNNGG	1 cut(s)	934
Bse118I	RCCGGY	1 cut(s)	342
Bse1I	ACTGG	3 cut(s)	313, 621, 787
Bse3DI	GCAATG	1 cut(s)	378
Bse8I	GATNNNNATC	1 cut(s)	993
BseAI	TCCGGA	1 cut(s)	875
BseDI	CCNNGG	2 cut(s)	606, 984
BseGI	GGATG	2 cut(s)	222, 1009
BseJI	GATNNNNATC	1 cut(s)	993
BseLI	CCNNNNNNNGG	1 cut(s)	934
BseMI	GCAATG	1 cut(s)	378
BseMII	CTCAG	2 cut(s)	503, 924
BseNI	ACTGG	3 cut(s)	313, 621, 787
BseYI	CCCAGC	1 cut(s)	696
BshFI	GGCC	4 cut(s)	122, 158, 695, 861
BshNI	GGYRCC	1 cut(s)	284
BsiSI	CCGG	3 cut(s)	343, 845, 876
BsiWI	CGTACG	1 cut(s)	177
BslFI	GGGAC	2 cut(s)	633, 929
BslI	CCNNNNNNNGG	1 cut(s)	934
BsmFI	GGGAC	2 cut(s)	633, 929
BsmI	GAATGC	1 cut(s)	956
BsnI	GGCC	4 cut(s)	122, 158, 695, 861
Bsp119I	TTCGAA	1 cut(s)	650
Bsp13I	TCCGGA	1 cut(s)	875
Bsp1407I	TGTACA	1 cut(s)	576
Bsp143I	GATC	4 cut(s)	325, 663, 730, 799
BspACI	CCGC	3 cut(s)	195, 288, 692
BspANI	GGCC	4 cut(s)	122, 158, 695, 861
BspCNI	CTCAG	2 cut(s)	502, 925
BspEI	TCCGGA	1 cut(s)	875
BspLI	GGNNCC	3 cut(s)	286, 313, 801
BspPI	GGATC	3 cut(s)	671, 794, 807
BspT104I	TTCGAA	1 cut(s)	650
BspT107I	GGYRCC	1 cut(s)	284
BsrDI	GCAATG	1 cut(s)	378
BsrFI	RCCGGY	1 cut(s)	342
BsrGI	TGTACA	1 cut(s)	576
BsrI	ACTGG	3 cut(s)	313, 621, 787
BssAI	RCCGGY	1 cut(s)	342
BssECI	CCNNGG	2 cut(s)	606, 984
BssMI	GATC	4 cut(s)	325, 663, 730, 799
BssNI	GRCGYC	1 cut(s)	285
BssT1I	CCWWGG	1 cut(s)	606
Bst4CI	ACNGT	3 cut(s)	445, 689, 779
BstACI	GRCGYC	1 cut(s)	285
BstAUI	TGTACA	1 cut(s)	576
BstBI	TTCGAA	1 cut(s)	650
BstDEI	CTNAG	3 cut(s)	489, 933, 1015
BstDSI	CCRYGG	1 cut(s)	984
BstF5I	GGATG	2 cut(s)	222, 1009
BstH2I	RGCGCY	2 cut(s)	83, 288
BstHHI	GCGC	4 cut(s)	82, 175, 287, 378
BstKTI	GATC	4 cut(s)	328, 666, 733, 802
BstMBI	GATC	4 cut(s)	325, 663, 730, 799
BstMWI	GCNNNNNNNGC	1 cut(s)	284
BstNSI	RCATGY	1 cut(s)	672
BstX2I	RGATCY	1 cut(s)	799
BstYI	RGATCY	1 cut(s)	799
BsuRI	GGCC	4 cut(s)	122, 158, 695, 861
BtgI	CCRYGG	1 cut(s)	984
BtsCI	GGATG	2 cut(s)	222, 1009
BtsIMutI	CAGTG	3 cut(s)	14, 450, 694
CaiI	CAGNNNCTG	1 cut(s)	352
CfoI	GCGC	4 cut(s)	82, 175, 287, 378
Cfr10I	RCCGGY	1 cut(s)	342
Cfr13I	GGNCC	1 cut(s)	694
Csp6I	GTAC	6 cut(s)	89, 178, 421, 577, 719, 780
CviAII	CATG	4 cut(s)	74, 484, 669, 885
CviQI	GTAC	6 cut(s)	89, 178, 421, 577, 719, 780
DdeI	CTNAG	3 cut(s)	489, 933, 1015
DinI	GGCGCC	1 cut(s)	286
DpnI	GATC	4 cut(s)	327, 665, 732, 801
DpnII	GATC	4 cut(s)	325, 663, 730, 799
EaeI	YGGCCR	3 cut(s)	120, 156, 859
Eco130I	CCWWGG	1 cut(s)	606
Eco57I	CTGAAG	1 cut(s)	519
EcoT14I	CCWWGG	1 cut(s)	606
EcoT22I	ATGCAT	1 cut(s)	280
EgeI	GGCGCC	1 cut(s)	286
EheI	GGCGCC	1 cut(s)	286
ErhI	CCWWGG	1 cut(s)	606
FaeI	CATG	4 cut(s)	77, 487, 672, 888
FalI	AAGNNNNNCTT	2 cut(s)	590, 622
FaqI	GGGAC	2 cut(s)	633, 929
FatI	CATG	4 cut(s)	73, 483, 668, 884
FauI	CCCGC	1 cut(s)	202
FbaI	TGATCA	2 cut(s)	325, 730
Fnu4HI	GCNGC	2 cut(s)	288, 693
FokI	GGATG	2 cut(s)	209, 1016
Fsp4HI	GCNGC	2 cut(s)	288, 693
FspBI	CTAG	1 cut(s)	558
FspI	TGCGCA	1 cut(s)	377
GlaI	GCGC	4 cut(s)	81, 174, 286, 377
GluI	GCNGC	2 cut(s)	288, 693
GsaI	CCCAGC	1 cut(s)	700
HaeII	RGCGCY	2 cut(s)	83, 288
HaeIII	GGCC	4 cut(s)	122, 158, 695, 861
HapII	CCGG	3 cut(s)	343, 845, 876
HhaI	GCGC	4 cut(s)	82, 175, 287, 378
Hin1I	GRCGYC	1 cut(s)	285
Hin1II	CATG	4 cut(s)	77, 487, 672, 888
Hin6I	GCGC	4 cut(s)	80, 173, 285, 376
HinP1I	GCGC	4 cut(s)	80, 173, 285, 376
HincII	GTYRAC	2 cut(s)	775, 979
HindII	GTYRAC	2 cut(s)	775, 979
HindIII	AAGCTT	1 cut(s)	713
HinfI	GANTC	7 cut(s)	113, 217, 295, 355, 621, 816, 917
HpaII	CCGG	3 cut(s)	343, 845, 876
HphI	GGTGA	5 cut(s)	43, 122, 335, 350, 859
Hpy166II	GTNNAC	3 cut(s)	166, 775, 979
Hpy188I	TCNGA	1 cut(s)	962
Hpy188III	TCNNGA	2 cut(s)	299, 876
Hpy8I	GTNNAC	3 cut(s)	166, 775, 979
HpyAV	CCTTC	2 cut(s)	592, 652
HpyCH4III	ACNGT	3 cut(s)	445, 689, 779
HpyCH4V	TGCA	7 cut(s)	236, 278, 418, 633, 644, 758, 956
HpyF10VI	GCNNNNNNNGC	1 cut(s)	284
HpyF3I	CTNAG	3 cut(s)	489, 933, 1015
Hsp92I	GRCGYC	1 cut(s)	285
Hsp92II	CATG	4 cut(s)	77, 487, 672, 888
HspAI	GCGC	4 cut(s)	80, 173, 285, 376
KasI	GGCGCC	1 cut(s)	284
Kpn2I	TCCGGA	1 cut(s)	875
Ksp22I	TGATCA	2 cut(s)	325, 730
Kzo9I	GATC	4 cut(s)	325, 663, 730, 799
LmnI	GCTCC	3 cut(s)	77, 317, 590
LweI	GCATC	3 cut(s)	287, 745, 947
MaeI	CTAG	1 cut(s)	558
MaeIII	GTNAC	3 cut(s)	348, 455, 1010
MalI	GATC	4 cut(s)	327, 665, 732, 801
MboI	GATC	4 cut(s)	325, 663, 730, 799
MboII	GAAGA	2 cut(s)	91, 314
MflI	RGATCY	1 cut(s)	799
MlsI	TGGCCA	2 cut(s)	158, 861
MluNI	TGGCCA	2 cut(s)	158, 861
Mly113I	GGCGCC	1 cut(s)	285
MlyI	GAGTC	2 cut(s)	615, 911
MmeI	TCCRAC	2 cut(s)	592, 793
MnlI	CCTC	4 cut(s)	152, 498, 732, 928
Mox20I	TGGCCA	2 cut(s)	158, 861
Mph1103I	ATGCAT	1 cut(s)	280
MroI	TCCGGA	1 cut(s)	875
MroXI	GAANNNNTTC	1 cut(s)	790
MscI	TGGCCA	2 cut(s)	158, 861
MseI	TTAA	5 cut(s)	26, 261, 270, 471, 1026
MslI	CAYNNNNRTG	1 cut(s)	19
Msp20I	TGGCCA	2 cut(s)	158, 861
MspA1I	CMGCKG	1 cut(s)	197
MspI	CCGG	3 cut(s)	343, 845, 876
Mva1269I	GAATGC	1 cut(s)	956
MwoI	GCNNNNNNNGC	1 cut(s)	284
NarI	GGCGCC	1 cut(s)	285
NdeII	GATC	4 cut(s)	325, 663, 730, 799
NlaIII	CATG	4 cut(s)	77, 487, 672, 888
NlaIV	GGNNCC	3 cut(s)	286, 313, 801
NmuCI	GTSAC	1 cut(s)	1010
NsbI	TGCGCA	1 cut(s)	377
NsiI	ATGCAT	1 cut(s)	280
NspI	RCATGY	1 cut(s)	672
NspV	TTCGAA	1 cut(s)	650
PciI	ACATGT	1 cut(s)	668
PctI	GAATGC	1 cut(s)	956
PdmI	GAANNNNTTC	1 cut(s)	790
PfeI	GAWTC	5 cut(s)	113, 217, 295, 355, 816
Pfl23II	CGTACG	1 cut(s)	177
PkrI	GCNGC	2 cut(s)	289, 694
PleI	GAGTC	2 cut(s)	615, 911
PluTI	GGCGCC	1 cut(s)	288
PpsI	GAGTC	2 cut(s)	615, 911
PscI	ACATGT	1 cut(s)	668
PspFI	CCCAGC	1 cut(s)	696
PspLI	CGTACG	1 cut(s)	177
PspN4I	GGNNCC	3 cut(s)	286, 313, 801
PspPI	GGNCC	1 cut(s)	694
PstNI	CAGNNNCTG	1 cut(s)	352
PsuI	RGATCY	1 cut(s)	799
RsaI	GTAC	6 cut(s)	90, 179, 422, 578, 720, 781
RsaNI	GTAC	6 cut(s)	89, 178, 421, 577, 719, 780
RseI	CAYNNNNRTG	1 cut(s)	19
SaqAI	TTAA	5 cut(s)	26, 261, 270, 471, 1026
SatI	GCNGC	2 cut(s)	288, 693
Sau3AI	GATC	4 cut(s)	325, 663, 730, 799
Sau96I	GGNCC	1 cut(s)	694
ScaI	AGTACT	2 cut(s)	422, 781
SchI	GAGTC	2 cut(s)	615, 911
SfaNI	GCATC	3 cut(s)	287, 745, 947
SfoI	GGCGCC	1 cut(s)	286
SfuI	TTCGAA	1 cut(s)	650
SmiMI	CAYNNNNRTG	1 cut(s)	19
SsiI	CCGC	3 cut(s)	195, 288, 692
SspDI	GGCGCC	1 cut(s)	284
SspMI	CTAG	1 cut(s)	558
StyI	CCWWGG	1 cut(s)	606
TaaI	ACNGT	3 cut(s)	445, 689, 779
TaqI	TCGA	4 cut(s)	298, 394, 650, 941
TatI	WGTACW	3 cut(s)	420, 576, 779
TauI	GCSGC	2 cut(s)	290, 695
TfiI	GAWTC	5 cut(s)	113, 217, 295, 355, 816
Tru1I	TTAA	5 cut(s)	26, 261, 270, 471, 1026
Tru9I	TTAA	5 cut(s)	26, 261, 270, 471, 1026
TscAI	CASTG	3 cut(s)	21, 450, 694
TseFI	GTSAC	1 cut(s)	1010
Tsp45I	GTSAC	1 cut(s)	1010
TspDTI	ATGAA	6 cut(s)	62, 91, 105, 472, 693, 754
TspGWI	ACGGA	2 cut(s)	195, 1001
TspRI	CASTG	3 cut(s)	21, 450, 694
XapI	RAATTY	2 cut(s)	200, 761
XceI	RCATGY	1 cut(s)	672
XmnI	GAANNNNTTC	1 cut(s)	790
XspI	CTAG	1 cut(s)	558
ZrmI	AGTACT	2 cut(s)	422, 781
Zsp2I	ATGCAT	1 cut(s)	280

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.