Rmu_sc0003638.1_g000006

cinnamoyl-CoA reductase 1-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003638.1
OG0003662
Physical Location & Seq
Reverse (-)
36981 .. 41617
4637 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1194 bp
atggccgaagagaaggcaaatgaatctacagccaccagagaagtagagaaggctccgattgagcctctgcggatgcccacggtggaggagattcgcggccaagatatttggaacaactgtgtcgtgcgcagtgtcgctagtggagttatgggtggtggactagggttgatgatgggtttgtttcttggggctttagacaacccagtaatgcaagatcaaatgactggtagacagcaatttatatacacggcaaagcagatggggtcaaggagttggggttctgcaaaagcatttgcagtgatgggattcgttttctcagctgctgaatgtgttgttgaaaaggcacgggctaagcatgacacaacaaatacagttgttgcgggatgtgtcactggaggtgcattgtcagcaaaaggtggtccaaaagcagcctgtgttggttgtgctgggtttgccacattttcgggtgaggtcgtatgcgtcaccggtggaagcggctgcatcggatcatgggtcgtccgcctcctcctcgaccgcggctacaccgtccacgccaccgtcaaagacctcaaggacgacggcgagacgaagcatctagaagccctagaaggagcccaaacgcgcctccgcctcttccagatcgacctcctcgactacgattccatctccgccgcagtccacggctgctccggcgtcttccacctcgcctctccttgcatcgtcgaccaagtccatgacccccagaaggagctgttggacccggcgattaaaggaacgctgaatgttctaacggcggctaagcaggccggcgtgaagcgcgtggtgctcacgtcctccatatcggccatcattcccagccctacttggccggccgatgtcgtcaagagagaggattgctggactgatgttgagtactgcaagcagaaaggactgtggtatcctttatcgaaaactctggcggagaaagctgcgtgggaatttgccgaggagaaggggttggatgtggttgtggtgaatccggggacggtgatgggtgatgttatatcgccgaggctcaatgctagcaaaggtcagaggaagaagagggtcgctagctacaaggtgtacactctggaggggaagctgaaagggactctcaggaagagcttcaggtggctcaagcagacctgtgatagagtggtctatggccggtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Epimerase

Protein Analysis

397

Amino Acids

42.82

Weight (kDa)

8.72

Isoelectric Point (pI)

29.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Tim17 PF02466 40 - 155 9e-28 Tim17/Tim22/Tim23/Pmp24 family
NmrA PF05368 158 - 278 6.2e-13 NmrA-like family
Epimerase PF01370 159 - 347 6e-25 NAD dependent epimerase/dehydratase family
Polysacc_synt_2 PF02719 159 - 286 6.9e-09 Polysaccharide biosynthesis protein
KR PF08659 159 - 287 6.6e-09 KR domain
3Beta_HSD PF01073 161 - 324 1.7e-19 3-beta hydroxysteroid dehydrogenase/isomerase family
GDP_Man_Dehyd PF16363 161 - 279 1.6e-17 GDP-mannose 4,6 dehydratase
NAD_binding_4 PF07993 161 - 354 8.2e-09 Male sterility protein
NAD_binding_10 PF13460 163 - 344 9.6e-15 NAD(P)H-binding
DUF3511 PF12023 358 - 396 1e-19 Domain of unknown function (DUF3511)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 128
AccI GTMKAC 2 cut(s) 229, 723
AccII CGCG 4 cut(s) 96, 537, 622, 819
AclWI GGATC 1 cut(s) 514
AcoI YGGCCR 6 cut(s) 3, 97, 843, 866, 870, 1186
AcsI RAATTY 1 cut(s) 977
AcuI CTGAAG 1 cut(s) 1132
AcyI GRCGYC 1 cut(s) 693
AfaI GTAC 2 cut(s) 914, 1106
AfiI CCNNNNNNNGG 1 cut(s) 745
AgeI ACCGGT 1 cut(s) 485
AgsI TTSAA 1 cut(s) 338
AjiI CACGTC 1 cut(s) 831
AjuI GAANNNNNNNTTGG 2 cut(s) 737, 769
AloI GAACNNNNNNTCC 2 cut(s) 262, 294
AluBI AGCT 6 cut(s) 320, 751, 968, 1095, 1123, 1146
AluI AGCT 6 cut(s) 320, 751, 968, 1095, 1123, 1146
Alw21I GWGCWC 1 cut(s) 828
Alw26I GTCTC 1 cut(s) 578
AlwI GGATC 1 cut(s) 514
AlwNI CAGNNNCTG 1 cut(s) 323
AoxI GGCC 7 cut(s) 3, 97, 804, 843, 866, 870, 1186
ApeKI GCWGC 5 cut(s) 320, 428, 498, 684, 968
ApoI RAATTY 1 cut(s) 977
AsiGI ACCGGT 1 cut(s) 485
Asp700I GAANNNNTTC 1 cut(s) 1145
AspLEI GCGC 3 cut(s) 129, 624, 819
AspS9I GGNCC 2 cut(s) 419, 757
AsuC2I CCSGG 2 cut(s) 761, 1020
AsuHPI GGTGA 5 cut(s) 475, 479, 1024, 1039, 1046
AsuNHI GCTAGC 2 cut(s) 1061, 1091
AvaII GGWCC 2 cut(s) 419, 757
BaeI ACNNNNGTAYC 2 cut(s) 920, 953
BanII GRGCYC 1 cut(s) 616
BbsI GAAGAC 1 cut(s) 688
Bbv12I GWGCWC 1 cut(s) 828
BbvI GCAGC 5 cut(s) 307, 440, 485, 671, 955
BccI CCATC 6 cut(s) 166, 253, 295, 671, 854, 1024
BceAI ACGGC 4 cut(s) 264, 595, 697, 807
BciVI GTATCC 1 cut(s) 948
BcnI CCSGG 2 cut(s) 761, 1020
BcoDI GTCTC 1 cut(s) 578
BfaI CTAG 6 cut(s) 138, 161, 596, 605, 1062, 1092
BfmI CTRYAG 1 cut(s) 27
BfuI GTATCC 1 cut(s) 948
BlpI GCTNAGC 2 cut(s) 351, 798
BmcAI AGTACT 1 cut(s) 914
Bme1390I CCNGG 2 cut(s) 761, 1020
Bme18I GGWCC 2 cut(s) 419, 757
BmgBI CACGTC 1 cut(s) 831
BmgT120I GGNCC 2 cut(s) 419, 757
BmiI GGNNCC 3 cut(s) 54, 613, 759
BmrFI CCNGG 2 cut(s) 761, 1020
BmrI ACTGGG 1 cut(s) 197
BmsI GCATC 4 cut(s) 63, 510, 601, 726
BmtI GCTAGC 2 cut(s) 1065, 1095
BmuI ACTGGG 1 cut(s) 197
BpiI GAAGAC 1 cut(s) 688
BpmI CTGGAG 2 cut(s) 414, 1133
Bpu1102I GCTNAGC 2 cut(s) 351, 798
BpuEI CTTGAG 2 cut(s) 554, 1142
BpuMI CCSGG 2 cut(s) 761, 1020
BsaHI GRCGYC 1 cut(s) 693
BsaJI CCNNGG 6 cut(s) 78, 535, 679, 984, 1019, 1049
BsaWI WCCGGW 1 cut(s) 485
BsaXI ACNNNNNCTCC 6 cut(s) 262, 292, 671, 701, 980, 1010
Bsc4I CCNNNNNNNGG 1 cut(s) 745
Bse118I RCCGGY 4 cut(s) 485, 806, 868, 1188
Bse1I ACTGG 3 cut(s) 203, 229, 397
BseDI CCNNGG 6 cut(s) 78, 535, 679, 984, 1019, 1049
BseGI GGATG 3 cut(s) 78, 389, 1006
BseLI CCNNNNNNNGG 1 cut(s) 745
BseMII CTCAG 2 cut(s) 330, 1150
BseNI ACTGG 3 cut(s) 203, 229, 397
BseRI GAGGAG 5 cut(s) 101, 515, 518, 638, 1001
BseX3I CGGCCG 1 cut(s) 870
BseXI GCAGC 5 cut(s) 307, 440, 485, 671, 955
BseYI CCCAGC 2 cut(s) 446, 854
Bsh1236I CGCG 4 cut(s) 96, 537, 622, 819
Bsh1285I CGRYCG 2 cut(s) 535, 873
BshFI GGCC 7 cut(s) 5, 99, 806, 845, 868, 872, 1188
BshTI ACCGGT 1 cut(s) 485
BsiEI CGRYCG 2 cut(s) 535, 873
BsiHKAI GWGCWC 1 cut(s) 828
BsiSI CCGG 7 cut(s) 486, 690, 761, 807, 869, 1019, 1189
BslFI GGGAC 2 cut(s) 1036, 1144
BslI CCNNNNNNNGG 1 cut(s) 745
BsmAI GTCTC 1 cut(s) 578
BsmBI CGTCTC 1 cut(s) 578
BsmFI GGGAC 2 cut(s) 1036, 1144
BsnI GGCC 7 cut(s) 5, 99, 806, 845, 868, 872, 1188
Bsp1286I GDGCHC 2 cut(s) 616, 828
Bsp1407I TGTACA 1 cut(s) 1104
Bsp143I GATC 3 cut(s) 214, 506, 639
Bsp1720I GCTNAGC 2 cut(s) 351, 798
BspANI GGCC 7 cut(s) 5, 99, 806, 845, 868, 872, 1188
BspCNI CTCAG 2 cut(s) 329, 1149
BspFNI CGCG 4 cut(s) 96, 537, 622, 819
BspLI GGNNCC 3 cut(s) 54, 613, 759
BspOI GCTAGC 2 cut(s) 1065, 1095
BspPI GGATC 1 cut(s) 514
BspQI GCTCTTC 1 cut(s) 1136
BsrFI RCCGGY 4 cut(s) 485, 806, 868, 1188
BsrGI TGTACA 1 cut(s) 1104
BsrI ACTGG 3 cut(s) 203, 229, 397
BssAI RCCGGY 4 cut(s) 485, 806, 868, 1188
BssECI CCNNGG 6 cut(s) 78, 535, 679, 984, 1019, 1049
BssMI GATC 3 cut(s) 214, 506, 639
BssNI GRCGYC 1 cut(s) 693
Bst4CI ACNGT 7 cut(s) 82, 119, 373, 547, 559, 933, 1027
Bst6I CTCTTC 4 cut(s) 3, 638, 1076, 1136
BstACI GRCGYC 1 cut(s) 693
BstAUI TGTACA 1 cut(s) 1104
BstC8I GCNNGC 6 cut(s) 804, 808, 870, 920, 1063, 1093
BstDEI CTNAG 4 cut(s) 316, 351, 798, 1136
BstDSI CCRYGG 3 cut(s) 78, 535, 679
BstF5I GGATG 3 cut(s) 78, 389, 1006
BstFNI CGCG 4 cut(s) 96, 537, 622, 819
BstHHI GCGC 3 cut(s) 129, 624, 819
BstKTI GATC 3 cut(s) 217, 509, 642
BstMAI GTCTC 1 cut(s) 578
BstMBI GATC 3 cut(s) 214, 506, 639
BstMCI CGRYCG 2 cut(s) 535, 873
BstMWI GCNNNNNNNGC 7 cut(s) 407, 452, 690, 803, 816, 823, 965
BstSCI CCNGG 2 cut(s) 759, 1018
BstSFI CTRYAG 1 cut(s) 27
BstUI CGCG 4 cut(s) 96, 537, 622, 819
BstV1I GCAGC 5 cut(s) 307, 440, 485, 671, 955
BstV2I GAAGAC 1 cut(s) 688
BstZI CGGCCG 1 cut(s) 870
BsuI GTATCC 1 cut(s) 948
BsuRI GGCC 7 cut(s) 5, 99, 806, 845, 868, 872, 1188
BtgI CCRYGG 3 cut(s) 78, 535, 679
BtrI CACGTC 1 cut(s) 831
BtsCI GGATG 3 cut(s) 78, 389, 1006
BtsI GCAGTG 2 cut(s) 136, 303
BtsIMutI CAGTG 3 cut(s) 136, 303, 390
Cac8I GCNNGC 6 cut(s) 804, 808, 870, 920, 1063, 1093
CaiI CAGNNNCTG 1 cut(s) 323
CfoI GCGC 3 cut(s) 129, 624, 819
Cfr10I RCCGGY 4 cut(s) 485, 806, 868, 1188
Cfr13I GGNCC 2 cut(s) 419, 757
Cfr42I CCGCGG 1 cut(s) 538
CseI GACGC 2 cut(s) 469, 682
Csp6I GTAC 2 cut(s) 913, 1105
CspAI ACCGGT 1 cut(s) 485
CviAII CATG 3 cut(s) 356, 510, 734
CviQI GTAC 2 cut(s) 913, 1105
DdeI CTNAG 4 cut(s) 316, 351, 798, 1136
DpnI GATC 3 cut(s) 216, 508, 641
DpnII GATC 3 cut(s) 214, 506, 639
EaeI YGGCCR 6 cut(s) 3, 97, 843, 866, 870, 1186
EagI CGGCCG 1 cut(s) 870
Eam1104I CTCTTC 4 cut(s) 3, 638, 1076, 1136
EarI CTCTTC 4 cut(s) 3, 638, 1076, 1136
EciI GGCGGA 4 cut(s) 509, 617, 658, 974
EclXI CGGCCG 1 cut(s) 870
Eco24I GRGCYC 1 cut(s) 616
Eco47I GGWCC 2 cut(s) 419, 757
Eco52I CGGCCG 1 cut(s) 870
Eco57I CTGAAG 1 cut(s) 1132
EcoT38I GRGCYC 1 cut(s) 616
Esp3I CGTCTC 1 cut(s) 578
FaeI CATG 3 cut(s) 359, 513, 737
FaqI GGGAC 2 cut(s) 1036, 1144
FatI CATG 3 cut(s) 355, 509, 733
FauI CCCGC 1 cut(s) 373
FblI GTMKAC 2 cut(s) 229, 723
FokI GGATG 3 cut(s) 85, 396, 1013
FriOI GRGCYC 1 cut(s) 616
FseI GGCCGGCC 1 cut(s) 872
FspBI CTAG 6 cut(s) 138, 161, 596, 605, 1062, 1092
FspI TGCGCA 1 cut(s) 128
GlaI GCGC 3 cut(s) 128, 623, 818
GsaI CCCAGC 2 cut(s) 450, 858
GsuI CTGGAG 2 cut(s) 414, 1133
HaeIII GGCC 7 cut(s) 5, 99, 806, 845, 868, 872, 1188
HapII CCGG 7 cut(s) 486, 690, 761, 807, 869, 1019, 1189
HgaI GACGC 2 cut(s) 469, 682
HhaI GCGC 3 cut(s) 129, 624, 819
Hin1I GRCGYC 1 cut(s) 693
Hin1II CATG 3 cut(s) 359, 513, 737
Hin6I GCGC 3 cut(s) 127, 622, 817
HinP1I GCGC 3 cut(s) 127, 622, 817
HincII GTYRAC 1 cut(s) 724
HindII GTYRAC 1 cut(s) 724
HinfI GANTC 6 cut(s) 23, 91, 306, 659, 1015, 1132
HpaII CCGG 7 cut(s) 486, 690, 761, 807, 869, 1019, 1189
HphI GGTGA 5 cut(s) 475, 479, 1024, 1039, 1046
Hpy166II GTNNAC 7 cut(s) 158, 230, 550, 679, 724, 1105, 1107
Hpy188I TCNGA 3 cut(s) 57, 506, 1074
Hpy188III TCNNGA 5 cut(s) 596, 637, 883, 1112, 1138
Hpy8I GTNNAC 7 cut(s) 158, 230, 550, 679, 724, 1105, 1107
Hpy99I CGWCG 2 cut(s) 581, 725
HpyAV CCTTC 5 cut(s) 7, 43, 602, 739, 985
HpyCH4III ACNGT 7 cut(s) 82, 119, 373, 547, 559, 933, 1027
HpyCH4IV ACGT 1 cut(s) 830
HpyCH4V TGCA 7 cut(s) 211, 284, 296, 401, 501, 717, 918
HpyF10VI GCNNNNNNNGC 7 cut(s) 407, 452, 690, 803, 816, 823, 965
HpyF3I CTNAG 4 cut(s) 316, 351, 798, 1136
HpySE526I ACGT 1 cut(s) 830
Hsp92I GRCGYC 1 cut(s) 693
Hsp92II CATG 3 cut(s) 359, 513, 737
HspAI GCGC 3 cut(s) 127, 622, 817
KroI GCCGGC 2 cut(s) 806, 868
KroNI GCCGGC 2 cut(s) 808, 870
KspI CCGCGG 1 cut(s) 538
Kzo9I GATC 3 cut(s) 214, 506, 639
LguI GCTCTTC 1 cut(s) 1136
LmnI GCTCC 4 cut(s) 58, 611, 692, 748
Lsp1109I GCAGC 5 cut(s) 307, 440, 485, 671, 955
LweI GCATC 4 cut(s) 63, 510, 601, 726
MaeI CTAG 6 cut(s) 138, 161, 596, 605, 1062, 1092
MaeII ACGT 1 cut(s) 830
MaeIII GTNAC 2 cut(s) 388, 481
MalI GATC 3 cut(s) 216, 508, 641
MboI GATC 3 cut(s) 214, 506, 639
MboII GAAGA 6 cut(s) 20, 625, 688, 1090, 1093, 1153
MhlI GDGCHC 2 cut(s) 616, 828
MluCI AATT 2 cut(s) 236, 977
MlyI GAGTC 1 cut(s) 1126
MmeI TCCRAC 2 cut(s) 735, 978
MroNI GCCGGC 2 cut(s) 806, 868
MroXI GAANNNNTTC 1 cut(s) 1145
MseI TTAA 1 cut(s) 768
MspA1I CMGCKG 2 cut(s) 320, 537
MspI CCGG 7 cut(s) 486, 690, 761, 807, 869, 1019, 1189
MspR9I CCNGG 2 cut(s) 761, 1020
MvnI CGCG 4 cut(s) 96, 537, 622, 819
MwoI GCNNNNNNNGC 7 cut(s) 407, 452, 690, 803, 816, 823, 965
NaeI GCCGGC 2 cut(s) 808, 870
NciI CCSGG 2 cut(s) 761, 1020
NdeII GATC 3 cut(s) 214, 506, 639
NgoMIV GCCGGC 2 cut(s) 806, 868
NheI GCTAGC 2 cut(s) 1061, 1091
NlaIII CATG 3 cut(s) 359, 513, 737
NlaIV GGNNCC 3 cut(s) 54, 613, 759
NmeAIII GCCGAG 2 cut(s) 1009, 1074
NmuCI GTSAC 2 cut(s) 388, 481
NsbI TGCGCA 1 cut(s) 128
PciSI GCTCTTC 1 cut(s) 1136
PcsI WCGNNNNNNNCGW 1 cut(s) 648
PdiI GCCGGC 2 cut(s) 808, 870
PdmI GAANNNNTTC 1 cut(s) 1145
PfeI GAWTC 5 cut(s) 23, 91, 306, 659, 1015
PflFI GACNNNGTC 1 cut(s) 728
PinAI ACCGGT 1 cut(s) 485
PleI GAGTC 1 cut(s) 1126
PpsI GAGTC 1 cut(s) 1126
PspFI CCCAGC 2 cut(s) 446, 854
PspN4I GGNNCC 3 cut(s) 54, 613, 759
PspPI GGNCC 2 cut(s) 419, 757
PstNI CAGNNNCTG 1 cut(s) 323
PsyI GACNNNGTC 1 cut(s) 728
PvuII CAGCTG 1 cut(s) 320
RigI GGCCGGCC 1 cut(s) 872
RsaI GTAC 2 cut(s) 914, 1106
RsaNI GTAC 2 cut(s) 913, 1105
SacII CCGCGG 1 cut(s) 538
SalI GTCGAC 1 cut(s) 722
SapI GCTCTTC 1 cut(s) 1136
SaqAI TTAA 1 cut(s) 768
Sau3AI GATC 3 cut(s) 214, 506, 639
Sau96I GGNCC 2 cut(s) 419, 757
ScaI AGTACT 1 cut(s) 914
SchI GAGTC 1 cut(s) 1126
ScrFI CCNGG 2 cut(s) 761, 1020
SduI GDGCHC 2 cut(s) 616, 828
SfaNI GCATC 4 cut(s) 63, 510, 601, 726
SfcI CTRYAG 1 cut(s) 27
Sfr303I CCGCGG 1 cut(s) 538
SgrAI CRCCGGYG 1 cut(s) 485
SgrBI CCGCGG 1 cut(s) 538
SinI GGWCC 2 cut(s) 419, 757
SmlI CTYRAG 2 cut(s) 569, 1157
SmoI CTYRAG 2 cut(s) 569, 1157
Sse9I AATT 2 cut(s) 236, 977
SspMI CTAG 6 cut(s) 138, 161, 596, 605, 1062, 1092
StyD4I CCNGG 2 cut(s) 759, 1018
TaaI ACNGT 7 cut(s) 82, 119, 373, 547, 559, 933, 1027
TaiI ACGT 1 cut(s) 833
TaqI TCGA 5 cut(s) 531, 642, 651, 723, 947
TasI AATT 2 cut(s) 236, 977
TatI WGTACW 2 cut(s) 912, 1104
TauI GCSGC 5 cut(s) 99, 498, 540, 674, 797
TfiI GAWTC 5 cut(s) 23, 91, 306, 659, 1015
Tru1I TTAA 1 cut(s) 768
Tru9I TTAA 1 cut(s) 768
TscAI CASTG 3 cut(s) 136, 303, 397
TseFI GTSAC 2 cut(s) 388, 481
TseI GCWGC 5 cut(s) 320, 428, 498, 684, 968
Tsp45I GTSAC 2 cut(s) 388, 481
TspDTI ATGAA 1 cut(s) 36
TspRI CASTG 3 cut(s) 136, 303, 397
Tth111I GACNNNGTC 1 cut(s) 728
VpaK11BI GGWCC 2 cut(s) 419, 757
XapI RAATTY 1 cut(s) 977
XbaI TCTAGA 1 cut(s) 595
XmiI GTMKAC 2 cut(s) 229, 723
XmnI GAANNNNTTC 1 cut(s) 1145
XspI CTAG 6 cut(s) 138, 161, 596, 605, 1062, 1092
ZrmI AGTACT 1 cut(s) 914
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.