Rmu_sc0003878.1_g000045

Transferase family

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003878.1
OG0004543
Physical Location & Seq
Reverse (-)
207320 .. 208297
978 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 978 bp
atggagcagataaatgaatttgaaggaggaggagtggctattggactaagttgctctcacatgcaagcagacccaacttgtgtgaccctactcatcaagtcatgggctgagactcaccgccgggaacccgtcgtacacccgccttcctttgacgacttatcgaattcaccactcactcgcggactgaacattcacaacacaaacacaaaatcatcacgcggttattacgaagccaagtccatggcagcacagaccccattaatactaaagaaaatgggcacagccactttcaaattttccaatgaagtgatcaagcaaagcctcttagaaatccaccaaacatgctctgttgcaaccccgtttgatttgctggccgcactcttttggacacgcattgctcgcttaaagcacccgaaaagcaaaagcaagcactccctctccatttgtgtagatttcaggaagaagcttccgctctcttatgggtactacggtaatgccttacatttttcgttgctttcattacctgatgtggaagaaaaggaagacttcagagatgtggcagaagctgtgcagtaccatgtgtcgagtcagggcgaaggggagttttggtctgctttagactggtttgaatcacgaaaggaagagggaggtcagtttggggcaccttttagaatgtacggccccgagttgacatgtatgagcatggagcacatggttgactttcctgggattactgggaataagctgttgataaatacagctgtgtttgataaggagaacaggcccgtacacgtgtcatatcatgttggaaatgtggaaggggaagggttgataatggtgatgccatctctggaaggagggctggcaaggatggttacagtgacattgccggaggaggaactggagcaattatgtcaggatgaagctatttcgagcttaaacccaataatggtcataagtgggatgagacgagcataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Transferase

Protein Analysis

325

Amino Acids

36.29

Weight (kDa)

5.76

Isoelectric Point (pI)

38.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Transferase PF02458 3 - 307 1.8e-20 Transferase family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 661
AccBSI CCGCTC 1 cut(s) 472
AccII CGCG 2 cut(s) 180, 219
AciI CCGC 6 cut(s) 118, 140, 180, 219, 375, 470
AcoI YGGCCR 1 cut(s) 372
AcsI RAATTY 3 cut(s) 17, 163, 293
AcuI CTGAAG 1 cut(s) 532
AcvI CACGTG 1 cut(s) 793
AfaI GTAC 5 cut(s) 135, 485, 575, 677, 789
AfiI CCNNNNNNNGG 1 cut(s) 949
AflIII ACRYGT 3 cut(s) 692, 790, 792
AgsI TTSAA 3 cut(s) 23, 292, 629
AjnI CCWGG 1 cut(s) 724
AluBI AGCT 6 cut(s) 466, 566, 745, 761, 926, 936
AluI AGCT 6 cut(s) 466, 566, 745, 761, 926, 936
Alw21I GWGCWC 1 cut(s) 711
Alw26I GTCTC 2 cut(s) 104, 961
AlwNI CAGNNNCTG 1 cut(s) 566
Ama87I CYCGRG 1 cut(s) 683
AoxI GGCC 3 cut(s) 372, 679, 782
ApeKI GCWGC 1 cut(s) 245
ApoI RAATTY 3 cut(s) 17, 163, 293
AseI ATTAAT 1 cut(s) 260
AspS9I GGNCC 2 cut(s) 680, 783
AsuC2I CCSGG 1 cut(s) 122
AsuHPI GGTGA 3 cut(s) 107, 159, 850
AvaI CYCGRG 1 cut(s) 683
BaeGI GKGCMC 2 cut(s) 281, 664
BaeI ACNNNNGTAYC 2 cut(s) 475, 508
BanI GGYRCC 1 cut(s) 661
BbrPI CACGTG 1 cut(s) 793
BbsI GAAGAC 1 cut(s) 549
Bbv12I GWGCWC 1 cut(s) 711
BbvI GCAGC 1 cut(s) 257
BccI CCATC 2 cut(s) 853, 865
BceAI ACGGC 1 cut(s) 694
BciT130I CCWGG 1 cut(s) 726
BclI TGATCA 1 cut(s) 309
BcnI CCSGG 1 cut(s) 122
BcoDI GTCTC 2 cut(s) 104, 961
BisI GCNGC 2 cut(s) 246, 375
BlsI GCNGC 2 cut(s) 247, 376
Bme1390I CCNGG 2 cut(s) 122, 726
BmeT110I CYCGRG 1 cut(s) 683
BmgT120I GGNCC 2 cut(s) 680, 783
BmiI GGNNCC 3 cut(s) 126, 663, 682
BmrFI CCNGG 2 cut(s) 122, 726
BmrI ACTGGG 1 cut(s) 744
BmsI GCATC 1 cut(s) 831
BmuI ACTGGG 1 cut(s) 744
BpiI GAAGAC 1 cut(s) 549
BpmI CTGGAG 1 cut(s) 923
BpuMI CCSGG 1 cut(s) 122
BsaAI YACGTR 1 cut(s) 793
BsaJI CCNNGG 2 cut(s) 240, 725
BsaXI ACNNNNNCTCC 6 cut(s) 18, 48, 422, 452, 593, 623
Bsc4I CCNNNNNNNGG 1 cut(s) 949
Bse1I ACTGG 3 cut(s) 626, 739, 906
Bse3DI GCAATG 2 cut(s) 393, 884
BseBI CCWGG 1 cut(s) 726
BseDI CCNNGG 2 cut(s) 240, 725
BseGI GGATG 3 cut(s) 876, 925, 969
BseLI CCNNNNNNNGG 1 cut(s) 949
BseMI GCAATG 2 cut(s) 393, 884
BseMII CTCAG 1 cut(s) 99
BseNI ACTGG 3 cut(s) 626, 739, 906
BseRI GAGGAG 3 cut(s) 42, 45, 908
BseSI GKGCMC 2 cut(s) 281, 664
BseXI GCAGC 1 cut(s) 257
BsgI GTGCAG 1 cut(s) 590
Bsh1236I CGCG 2 cut(s) 180, 219
BshFI GGCC 3 cut(s) 374, 681, 784
BshNI GGYRCC 1 cut(s) 661
BsiHKAI GWGCWC 1 cut(s) 711
BsiHKCI CYCGRG 1 cut(s) 683
BsiSI CCGG 2 cut(s) 121, 890
BslI CCNNNNNNNGG 1 cut(s) 949
BsmAI GTCTC 2 cut(s) 104, 961
BsmBI CGTCTC 1 cut(s) 961
BsnI GGCC 3 cut(s) 374, 681, 784
BsoBI CYCGRG 1 cut(s) 683
Bsp1286I GDGCHC 3 cut(s) 281, 664, 711
Bsp143I GATC 1 cut(s) 309
Bsp19I CCATGG 1 cut(s) 240
BspACI CCGC 6 cut(s) 118, 140, 180, 219, 375, 470
BspANI GGCC 3 cut(s) 374, 681, 784
BspCNI CTCAG 1 cut(s) 100
BspFNI CGCG 2 cut(s) 180, 219
BspLI GGNNCC 3 cut(s) 126, 663, 682
BspT107I GGYRCC 1 cut(s) 661
BsrBI CCGCTC 1 cut(s) 472
BsrDI GCAATG 2 cut(s) 393, 884
BsrI ACTGG 3 cut(s) 626, 739, 906
BssECI CCNNGG 2 cut(s) 240, 725
BssMI GATC 1 cut(s) 309
BssT1I CCWWGG 1 cut(s) 240
Bst2UI CCWGG 1 cut(s) 726
Bst4CI ACNGT 2 cut(s) 491, 880
Bst6I CTCTTC 1 cut(s) 636
BstBAI YACGTR 1 cut(s) 793
BstC8I GCNNGC 5 cut(s) 66, 372, 400, 428, 864
BstDEI CTNAG 3 cut(s) 47, 108, 325
BstDSI CCRYGG 1 cut(s) 240
BstF5I GGATG 3 cut(s) 876, 925, 969
BstFNI CGCG 2 cut(s) 180, 219
BstKTI GATC 1 cut(s) 312
BstMAI GTCTC 2 cut(s) 104, 961
BstMBI GATC 1 cut(s) 309
BstMWI GCNNNNNNNGC 1 cut(s) 399
BstNI CCWGG 1 cut(s) 726
BstNSI RCATGY 3 cut(s) 64, 345, 696
BstSCI CCNGG 2 cut(s) 120, 724
BstSLI GKGCMC 2 cut(s) 281, 664
BstUI CGCG 2 cut(s) 180, 219
BstV1I GCAGC 1 cut(s) 257
BstV2I GAAGAC 1 cut(s) 549
BstXI CCANNNNNNTGG 1 cut(s) 241
BsuRI GGCC 3 cut(s) 374, 681, 784
BtgI CCRYGG 1 cut(s) 240
BtsCI GGATG 3 cut(s) 876, 925, 969
BtsIMutI CAGTG 1 cut(s) 885
Cac8I GCNNGC 5 cut(s) 66, 372, 400, 428, 864
CaiI CAGNNNCTG 1 cut(s) 566
Cfr13I GGNCC 2 cut(s) 680, 783
Csp6I GTAC 5 cut(s) 134, 484, 574, 676, 788
CviAII CATG 9 cut(s) 61, 102, 241, 342, 578, 693, 703, 712, 803
CviQI GTAC 5 cut(s) 134, 484, 574, 676, 788
DdeI CTNAG 3 cut(s) 47, 108, 325
DpnI GATC 1 cut(s) 311
DpnII GATC 1 cut(s) 309
EaeI YGGCCR 1 cut(s) 372
Eam1104I CTCTTC 1 cut(s) 636
EarI CTCTTC 1 cut(s) 636
Eco130I CCWWGG 1 cut(s) 240
Eco57I CTGAAG 1 cut(s) 532
Eco72I CACGTG 1 cut(s) 793
Eco88I CYCGRG 1 cut(s) 683
EcoRI GAATTC 1 cut(s) 163
EcoRII CCWGG 1 cut(s) 724
EcoT14I CCWWGG 1 cut(s) 240
ErhI CCWWGG 1 cut(s) 240
Esp3I CGTCTC 1 cut(s) 961
FaeI CATG 9 cut(s) 64, 105, 244, 345, 581, 696, 706, 715, 806
FalI AAGNNNNNCTT 2 cut(s) 530, 562
FatI CATG 9 cut(s) 60, 101, 240, 341, 577, 692, 702, 711, 802
FauI CCCGC 1 cut(s) 147
FbaI TGATCA 1 cut(s) 309
Fnu4HI GCNGC 2 cut(s) 246, 375
FokI GGATG 2 cut(s) 883, 932
Fsp4HI GCNGC 2 cut(s) 246, 375
GluI GCNGC 2 cut(s) 246, 375
GsuI CTGGAG 1 cut(s) 923
HaeIII GGCC 3 cut(s) 374, 681, 784
HapII CCGG 2 cut(s) 121, 890
Hin1II CATG 9 cut(s) 64, 105, 244, 345, 581, 696, 706, 715, 806
HincII GTYRAC 2 cut(s) 690, 718
HindII GTYRAC 2 cut(s) 690, 718
HindIII AAGCTT 1 cut(s) 464
HinfI GANTC 3 cut(s) 112, 586, 629
HpaII CCGG 2 cut(s) 121, 890
HphI GGTGA 3 cut(s) 107, 159, 850
Hpy166II GTNNAC 4 cut(s) 136, 690, 718, 790
Hpy188I TCNGA 1 cut(s) 551
Hpy188III TCNNGA 4 cut(s) 457, 633, 851, 917
Hpy8I GTNNAC 4 cut(s) 136, 690, 718, 790
Hpy99I CGWCG 1 cut(s) 134
HpyAV CCTTC 6 cut(s) 17, 153, 590, 812, 818, 848
HpyCH4III ACNGT 2 cut(s) 491, 880
HpyCH4IV ACGT 1 cut(s) 792
HpyCH4V TGCA 3 cut(s) 64, 353, 571
HpyF10VI GCNNNNNNNGC 1 cut(s) 399
HpyF3I CTNAG 3 cut(s) 47, 108, 325
HpySE526I ACGT 1 cut(s) 792
Hsp92II CATG 9 cut(s) 64, 105, 244, 345, 581, 696, 706, 715, 806
Ksp22I TGATCA 1 cut(s) 309
Kzo9I GATC 1 cut(s) 309
LmnI GCTCC 3 cut(s) 4, 706, 904
Lsp1109I GCAGC 1 cut(s) 257
LweI GCATC 1 cut(s) 831
MaeII ACGT 1 cut(s) 792
MaeIII GTNAC 3 cut(s) 82, 874, 880
MalI GATC 1 cut(s) 311
MbiI CCGCTC 1 cut(s) 472
MboI GATC 1 cut(s) 309
MboII GAAGA 4 cut(s) 472, 545, 554, 653
MhlI GDGCHC 3 cut(s) 281, 664, 711
MluCI AATT 4 cut(s) 17, 163, 293, 908
MlyI GAGTC 2 cut(s) 106, 595
MmeI TCCRAC 1 cut(s) 787
MnlI CCTC 9 cut(s) 20, 23, 332, 446, 637, 641, 851, 886, 889
MseI TTAA 3 cut(s) 260, 404, 938
MspA1I CMGCKG 1 cut(s) 761
MspI CCGG 2 cut(s) 121, 890
MspR9I CCNGG 2 cut(s) 122, 726
MvaI CCWGG 1 cut(s) 726
MvnI CGCG 2 cut(s) 180, 219
MwoI GCNNNNNNNGC 1 cut(s) 399
NciI CCSGG 1 cut(s) 122
NcoI CCATGG 1 cut(s) 240
NdeII GATC 1 cut(s) 309
NlaIII CATG 9 cut(s) 64, 105, 244, 345, 581, 696, 706, 715, 806
NlaIV GGNNCC 3 cut(s) 126, 663, 682
NmuCI GTSAC 2 cut(s) 82, 880
NspI RCATGY 3 cut(s) 64, 345, 696
PciI ACATGT 1 cut(s) 692
PfeI GAWTC 1 cut(s) 629
PkrI GCNGC 2 cut(s) 247, 376
PleI GAGTC 2 cut(s) 106, 594
PmaCI CACGTG 1 cut(s) 793
PmlI CACGTG 1 cut(s) 793
PpsI GAGTC 2 cut(s) 106, 594
Ppu21I YACGTR 1 cut(s) 793
PscI ACATGT 1 cut(s) 692
PshBI ATTAAT 1 cut(s) 260
Psp6I CCWGG 1 cut(s) 724
PspCI CACGTG 1 cut(s) 793
PspGI CCWGG 1 cut(s) 724
PspN4I GGNNCC 3 cut(s) 126, 663, 682
PspPI GGNCC 2 cut(s) 680, 783
PsrI GAACNNNNNNTAC 2 cut(s) 117, 149
PstNI CAGNNNCTG 1 cut(s) 566
PvuII CAGCTG 1 cut(s) 761
RsaI GTAC 5 cut(s) 135, 485, 575, 677, 789
RsaNI GTAC 5 cut(s) 134, 484, 574, 676, 788
SaqAI TTAA 3 cut(s) 260, 404, 938
SatI GCNGC 2 cut(s) 246, 375
Sau3AI GATC 1 cut(s) 309
Sau96I GGNCC 2 cut(s) 680, 783
SchI GAGTC 2 cut(s) 106, 595
ScrFI CCNGG 2 cut(s) 122, 726
SduI GDGCHC 3 cut(s) 281, 664, 711
SfaNI GCATC 1 cut(s) 831
Sse9I AATT 4 cut(s) 17, 163, 293, 908
SsiI CCGC 6 cut(s) 118, 140, 180, 219, 375, 470
StyD4I CCNGG 2 cut(s) 120, 724
StyI CCWWGG 1 cut(s) 240
TaaI ACNGT 2 cut(s) 491, 880
TaiI ACGT 1 cut(s) 795
TaqI TCGA 3 cut(s) 161, 584, 932
TasI AATT 4 cut(s) 17, 163, 293, 908
TauI GCSGC 1 cut(s) 377
TfiI GAWTC 1 cut(s) 629
Tru1I TTAA 3 cut(s) 260, 404, 938
Tru9I TTAA 3 cut(s) 260, 404, 938
TscAI CASTG 1 cut(s) 885
TseFI GTSAC 2 cut(s) 82, 880
TseI GCWGC 1 cut(s) 245
Tsp45I GTSAC 2 cut(s) 82, 880
TspDTI ATGAA 4 cut(s) 30, 318, 507, 936
TspRI CASTG 1 cut(s) 885
VspI ATTAAT 1 cut(s) 260
XapI RAATTY 3 cut(s) 17, 163, 293
XceI RCATGY 3 cut(s) 64, 345, 696
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.