Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0003880.1

Orthogroup ID

OG0011628

Physical Location & Seq

Genomic Coordinates Forward (+)

126184 .. 129511

Gene Structure 3328 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 603 bp

atggccagcaagattggactctgcgactcgactcgttctccaacttgtttcgggggatctcgagcctctcgtcgtcgccgtcgaagacctcgacgtgcagcaacagattcattccatgccagtcgtggcgttgccaatatggacggcgggaacattctgggcccaacttcccaaaccctagtgctcccaattcttccaccatgccatggacggcgtagctgggcctgggctacttcgatttggtgtcggcaacacagtcaagatgaaaccgctcagattcgggttgagttattggaggtggcaatcacatcaatcgttttcctcaaaggaatttatcctgcaggttatttcgttcctgacattgtggtggctgcagtaattggagttatgaccagttggtctgtaggccctctggtacctatttgtggttgctggttagccaggtcatccattttgcaagtcttattgcatcctagtgtgctagacttggctctgtcatctcagttctttccttatagcacggctgcacctaagagagttatcttccagcatacttttcttgctgcaggtatccaaactagcacgagttatcatgtgaaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0001541 GO:0003006 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0007275 GO:0007548 GO:0008150 GO:0008406 GO:0008585 GO:0012505 GO:0022414 GO:0032501 GO:0032502 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0045137 GO:0046545 GO:0046660 GO:0048513 GO:0048608 GO:0048731 GO:0048856 GO:0061458

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Peptidase_M28

Protein Analysis

200

Amino Acids

21.85

Weight (kDa)

10.23

Isoelectric Point (pI)

67.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011628)

Species	Orthologous Gene IDs
rosa_laevigata	RLG00000030373
rosa_multiflora	Rmu_sc0003880.1_g000025 Rmu_sc0006948.1_g000011 Rmu_sc0032105.1_g000001
rosa_rugosa	Rorug01G0189900 Rorug01G0190000 Rorug01G0190100 Rorug06G0061300 Rorug06G0061400
rosa_samantha	Rh1AG125400 Rh3BG351200 Rh3CG055900 Rh5AG334200 Rh5BG132800 Rh5DG508200 Rh6AG163600 Rh6BG167400 Rh6CG161200 Rh6DG152800 Rh6DG154100

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	397
Acc36I	ACCTGC	2 cut(s)	332, 557
Acc65I	GGTACC	1 cut(s)	415
AccB1I	GGYRCC	1 cut(s)	415
AccB7I	CCANNNNNTGG	1 cut(s)	206
AccBSI	CCGCTC	1 cut(s)	272
AciI	CCGC	2 cut(s)	147, 270
AclWI	GGATC	1 cut(s)	64
AcoI	YGGCCR	1 cut(s)	3
AcsI	RAATTY	1 cut(s)	330
AfaI	GTAC	1 cut(s)	417
AfiI	CCNNNNNNNGG	2 cut(s)	206, 425
AjiI	CACGTC	1 cut(s)	95
AjnI	CCWGG	2 cut(s)	224, 440
AluBI	AGCT	1 cut(s)	219
AluI	AGCT	1 cut(s)	219
Alw21I	GWGCWC	1 cut(s)	186
AlwI	GGATC	1 cut(s)	64
Ama87I	CYCGRG	1 cut(s)	60
AoxI	GGCC	4 cut(s)	3, 160, 222, 406
ApaI	GGGCCC	1 cut(s)	164
ApeKI	GCWGC	4 cut(s)	98, 371, 524, 563
ApoI	RAATTY	1 cut(s)	330
Asp718I	GGTACC	1 cut(s)	415
AspS9I	GGNCC	4 cut(s)	160, 161, 222, 407
AvaI	CYCGRG	1 cut(s)	60
BaeGI	GKGCMC	1 cut(s)	164
BalI	TGGCCA	1 cut(s)	5
BanI	GGYRCC	1 cut(s)	415
BanII	GRGCYC	1 cut(s)	164
BauI	CACGAG	1 cut(s)	583
BbsI	GAAGAC	1 cut(s)	91
Bbv12I	GWGCWC	1 cut(s)	186
BbvI	GCAGC	4 cut(s)	110, 358, 511, 550
BceAI	ACGGC	4 cut(s)	63, 160, 227, 537
BciT130I	CCWGG	2 cut(s)	226, 442
BciVI	GTATCC	1 cut(s)	581
BfaI	CTAG	4 cut(s)	179, 474, 482, 579
BfmI	CTRYAG	4 cut(s)	339, 372, 402, 564
BfuAI	ACCTGC	2 cut(s)	332, 557
BfuI	GTATCC	1 cut(s)	581
BisI	GCNGC	4 cut(s)	99, 372, 525, 564
BlsI	GCNGC	4 cut(s)	100, 373, 526, 565
Bme1390I	CCNGG	2 cut(s)	226, 442
BmeT110I	CYCGRG	1 cut(s)	60
BmgBI	CACGTC	1 cut(s)	95
BmgT120I	GGNCC	4 cut(s)	160, 161, 222, 407
BmiI	GGNNCC	2 cut(s)	162, 417
BmrFI	CCNGG	2 cut(s)	226, 442
BmsI	GCATC	1 cut(s)	478
BpiI	GAAGAC	1 cut(s)	91
BsaJI	CCNNGG	2 cut(s)	205, 225
BsaXI	ACNNNNNCTCC	2 cut(s)	22, 52
Bsc4I	CCNNNNNNNGG	2 cut(s)	206, 425
Bse1I	ACTGG	2 cut(s)	120, 393
BseBI	CCWGG	2 cut(s)	226, 442
BseDI	CCNNGG	2 cut(s)	205, 225
BseGI	GGATG	2 cut(s)	446, 469
BseLI	CCNNNNNNNGG	2 cut(s)	206, 425
BseMII	CTCAG	2 cut(s)	287, 515
BseNI	ACTGG	2 cut(s)	120, 393
BseSI	GKGCMC	1 cut(s)	164
BseXI	GCAGC	4 cut(s)	110, 358, 511, 550
BseYI	CCCAGC	1 cut(s)	219
BsgI	GTGCAG	2 cut(s)	117, 510
BshFI	GGCC	4 cut(s)	5, 162, 224, 408
BshNI	GGYRCC	1 cut(s)	415
BsiHKAI	GWGCWC	1 cut(s)	186
BsiHKCI	CYCGRG	1 cut(s)	60
BslI	CCNNNNNNNGG	2 cut(s)	206, 425
BsnI	GGCC	4 cut(s)	5, 162, 224, 408
BsoBI	CYCGRG	1 cut(s)	60
Bsp120I	GGGCCC	1 cut(s)	160
Bsp1286I	GDGCHC	2 cut(s)	164, 186
Bsp143I	GATC	1 cut(s)	56
Bsp19I	CCATGG	1 cut(s)	205
BspACI	CCGC	2 cut(s)	147, 270
BspANI	GGCC	4 cut(s)	5, 162, 224, 408
BspCNI	CTCAG	2 cut(s)	286, 514
BspLI	GGNNCC	2 cut(s)	162, 417
BspMAI	CTGCAG	3 cut(s)	343, 376, 568
BspMI	ACCTGC	2 cut(s)	332, 557
BspPI	GGATC	1 cut(s)	64
BspT107I	GGYRCC	1 cut(s)	415
BsrBI	CCGCTC	1 cut(s)	272
BsrI	ACTGG	2 cut(s)	120, 393
BssECI	CCNNGG	2 cut(s)	205, 225
BssMI	GATC	1 cut(s)	56
BssSI	CACGAG	1 cut(s)	583
BssT1I	CCWWGG	1 cut(s)	205
Bst2BI	CACGAG	1 cut(s)	583
Bst2UI	CCWGG	2 cut(s)	226, 442
Bst4CI	ACNGT	1 cut(s)	257
BstC8I	GCNNGC	1 cut(s)	7
BstDEI	CTNAG	3 cut(s)	273, 501, 531
BstDSI	CCRYGG	1 cut(s)	205
BstF5I	GGATG	2 cut(s)	446, 469
BstKTI	GATC	1 cut(s)	59
BstMBI	GATC	1 cut(s)	56
BstNI	CCWGG	2 cut(s)	226, 442
BstSCI	CCNGG	2 cut(s)	224, 440
BstSFI	CTRYAG	4 cut(s)	339, 372, 402, 564
BstSLI	GKGCMC	1 cut(s)	164
BstV1I	GCAGC	4 cut(s)	110, 358, 511, 550
BstV2I	GAAGAC	1 cut(s)	91
BstX2I	RGATCY	1 cut(s)	56
BstYI	RGATCY	1 cut(s)	56
BsuI	GTATCC	1 cut(s)	581
BsuRI	GGCC	4 cut(s)	5, 162, 224, 408
BtgI	CCRYGG	1 cut(s)	205
BtrI	CACGTC	1 cut(s)	95
BtsCI	GGATG	2 cut(s)	446, 469
BveI	ACCTGC	2 cut(s)	332, 557
Cac8I	GCNNGC	1 cut(s)	7
Cfr13I	GGNCC	4 cut(s)	160, 161, 222, 407
Csp6I	GTAC	1 cut(s)	416
CviAII	CATG	4 cut(s)	116, 201, 206, 593
CviQI	GTAC	1 cut(s)	416
DdeI	CTNAG	3 cut(s)	273, 501, 531
DpnI	GATC	1 cut(s)	58
DpnII	GATC	1 cut(s)	56
DrdI	GACNNNNNNGTC	1 cut(s)	397
DseDI	GACNNNNNNGTC	1 cut(s)	397
EaeI	YGGCCR	1 cut(s)	3
Eco130I	CCWWGG	1 cut(s)	205
Eco24I	GRGCYC	1 cut(s)	164
Eco88I	CYCGRG	1 cut(s)	60
EcoO109I	RGGNCCY	1 cut(s)	407
EcoRII	CCWGG	2 cut(s)	224, 440
EcoT14I	CCWWGG	1 cut(s)	205
EcoT38I	GRGCYC	1 cut(s)	164
ErhI	CCWWGG	1 cut(s)	205
FaeI	CATG	4 cut(s)	119, 204, 209, 596
FaiI	YATR	8 cut(s)	117, 140, 202, 207, 389, 516, 552, 594
FatI	CATG	4 cut(s)	115, 200, 205, 592
FauI	CCCGC	1 cut(s)	140
Fnu4HI	GCNGC	4 cut(s)	99, 372, 525, 564
FokI	GGATG	2 cut(s)	433, 456
FriOI	GRGCYC	1 cut(s)	164
Fsp4HI	GCNGC	4 cut(s)	99, 372, 525, 564
FspBI	CTAG	4 cut(s)	179, 474, 482, 579
GluI	GCNGC	4 cut(s)	99, 372, 525, 564
GsaI	CCCAGC	1 cut(s)	223
HaeIII	GGCC	4 cut(s)	5, 162, 224, 408
Hin1II	CATG	4 cut(s)	119, 204, 209, 596
HinfI	GANTC	5 cut(s)	18, 26, 31, 107, 277
Hpy188I	TCNGA	1 cut(s)	276
Hpy188III	TCNNGA	3 cut(s)	60, 260, 356
Hpy99I	CGWCG	4 cut(s)	75, 78, 84, 96
HpyCH4III	ACNGT	1 cut(s)	257
HpyCH4IV	ACGT	1 cut(s)	94
HpyCH4V	TGCA	7 cut(s)	98, 341, 374, 457, 469, 527, 566
HpyF3I	CTNAG	3 cut(s)	273, 501, 531
HpySE526I	ACGT	1 cut(s)	94
Hsp92II	CATG	4 cut(s)	119, 204, 209, 596
KpnI	GGTACC	1 cut(s)	419
Kzo9I	GATC	1 cut(s)	56
LmnI	GCTCC	1 cut(s)	189
Lsp1109I	GCAGC	4 cut(s)	110, 358, 511, 550
LweI	GCATC	1 cut(s)	478
MaeI	CTAG	4 cut(s)	179, 474, 482, 579
MaeII	ACGT	1 cut(s)	94
MalI	GATC	1 cut(s)	58
MbiI	CCGCTC	1 cut(s)	272
MboI	GATC	1 cut(s)	56
MboII	GAAGA	3 cut(s)	96, 185, 535
MflI	RGATCY	1 cut(s)	56
MhlI	GDGCHC	2 cut(s)	164, 186
MlsI	TGGCCA	1 cut(s)	5
MluCI	AATT	3 cut(s)	189, 330, 378
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	3 cut(s)	12, 20, 25
MmeI	TCCRAC	1 cut(s)	65
MnlI	CCTC	5 cut(s)	76, 99, 289, 332, 420
Mox20I	TGGCCA	1 cut(s)	5
MscI	TGGCCA	1 cut(s)	5
MslI	CAYNNNNRTG	2 cut(s)	365, 474
Msp20I	TGGCCA	1 cut(s)	5
MspR9I	CCNGG	2 cut(s)	226, 442
MvaI	CCWGG	2 cut(s)	226, 442
NcoI	CCATGG	1 cut(s)	205
NdeII	GATC	1 cut(s)	56
NlaIII	CATG	4 cut(s)	119, 204, 209, 596
NlaIV	GGNNCC	2 cut(s)	162, 417
PaeR7I	CTCGAG	1 cut(s)	60
PcsI	WCGNNNNNNNCGW	4 cut(s)	67, 76, 79, 88
PfeI	GAWTC	2 cut(s)	107, 277
PflMI	CCANNNNNTGG	1 cut(s)	206
PkrI	GCNGC	4 cut(s)	100, 373, 526, 565
PleI	GAGTC	3 cut(s)	12, 20, 25
PpsI	GAGTC	3 cut(s)	12, 20, 25
Psp6I	CCWGG	2 cut(s)	224, 440
PspFI	CCCAGC	1 cut(s)	219
PspGI	CCWGG	2 cut(s)	224, 440
PspN4I	GGNNCC	2 cut(s)	162, 417
PspOMI	GGGCCC	1 cut(s)	160
PspPI	GGNCC	4 cut(s)	160, 161, 222, 407
PstI	CTGCAG	3 cut(s)	343, 376, 568
PsuI	RGATCY	1 cut(s)	56
RsaI	GTAC	1 cut(s)	417
RsaNI	GTAC	1 cut(s)	416
RseI	CAYNNNNRTG	2 cut(s)	365, 474
SatI	GCNGC	4 cut(s)	99, 372, 525, 564
Sau3AI	GATC	1 cut(s)	56
Sau96I	GGNCC	4 cut(s)	160, 161, 222, 407
SbfI	CCTGCAGG	1 cut(s)	343
SchI	GAGTC	3 cut(s)	12, 20, 25
ScrFI	CCNGG	2 cut(s)	226, 442
SdaI	CCTGCAGG	1 cut(s)	343
SduI	GDGCHC	2 cut(s)	164, 186
SetI	ASST	9 cut(s)	91, 97, 221, 300, 346, 421, 446, 532, 571
SfaNI	GCATC	1 cut(s)	478
SfcI	CTRYAG	4 cut(s)	339, 372, 402, 564
Sfr274I	CTCGAG	1 cut(s)	60
SlaI	CTCGAG	1 cut(s)	60
SmiMI	CAYNNNNRTG	2 cut(s)	365, 474
SmlI	CTYRAG	1 cut(s)	60
SmoI	CTYRAG	1 cut(s)	60
Sse8387I	CCTGCAGG	1 cut(s)	343
Sse9I	AATT	3 cut(s)	189, 330, 378
SsiI	CCGC	2 cut(s)	147, 270
SspMI	CTAG	4 cut(s)	179, 474, 482, 579
StyD4I	CCNGG	2 cut(s)	224, 440
StyI	CCWWGG	1 cut(s)	205
TaaI	ACNGT	1 cut(s)	257
TaiI	ACGT	1 cut(s)	97
TaqI	TCGA	5 cut(s)	29, 61, 82, 91, 236
TasI	AATT	3 cut(s)	189, 330, 378
TfiI	GAWTC	2 cut(s)	107, 277
TseI	GCWGC	4 cut(s)	98, 371, 524, 563
TspDTI	ATGAA	2 cut(s)	99, 279
Van91I	CCANNNNNTGG	1 cut(s)	206
XapI	RAATTY	1 cut(s)	330
XcmI	CCANNNNNNNNNTGG	1 cut(s)	122
XhoI	CTCGAG	1 cut(s)	60
XspI	CTAG	4 cut(s)	179, 474, 482, 579

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.