Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004132.1

Orthogroup ID

OG0002479

Physical Location & Seq

Genomic Coordinates Reverse (-)

71399 .. 72876

Gene Structure 1478 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004132.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 636 bp

atggtttacgtcttgcagcatgttgaagcccttgagattcttcttcagggtctttgtggtgttcgcagagaacctttgaaggtccatgagatatgccttaaaagtggcccaaacttaggagctgtaccttctgaggttcgacttatttgcaatcttgaacaaactgaacctacatggactgtgaggttcgtggggggtgcgatgagaggtgcaggtgctgagcaactctcagttttagtaagaactgtgatcgaaagcaaagcaagcaagaatgtgcttcgcttattttatgcacttggctacaagttggatcatgagttactgagagtcgggtttgcgttccatttccagagaggcacgcagatgactgtgactgtgtcatcagttaataagatgccacaactacacaatacagatgaagctgtccctgtaactcccgggatacagttggttgaagttacagcccctgcatcgtctgaaacttatactgaagttgcgtcggcagtgtcatcattttgcgaatatcttgcaccgctcctgcatttgtcaaaaccaggaatttcaactggggttgttcctactgccgctgctgctgccgcatctctcatgtctgatggtgggggtactaccttatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000414 GO:0000428 GO:0001101 GO:0002831 GO:0003002 GO:0003006 GO:0003674 GO:0003712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006353 GO:0006355 GO:0006366 GO:0006369 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009966 GO:0009987 GO:0010033 GO:0010219 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0010646 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016591 GO:0016592 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0023051 GO:0030880 GO:0031047 GO:0031050 GO:0031056 GO:0031060 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031399 GO:0031554 GO:0031974 GO:0031981 GO:0032101 GO:0032268 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032991 GO:0033043 GO:0033044 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0040034 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043244 GO:0043254 GO:0043331 GO:0043900 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048442 GO:0048443 GO:0048464 GO:0048465 GO:0048466 GO:0048467 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051252 GO:0051253 GO:0051716 GO:0055029 GO:0060255 GO:0061458 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090567 GO:0090575 GO:0097305 GO:0097659 GO:0099402 GO:0140110 GO:1900150 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1902275 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000026 GO:2000028 GO:2000031 GO:2000112 GO:2000113 GO:2000142 GO:2000241 GO:2001023 GO:2001038 GO:2001141 GO:2001253

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

211

Amino Acids

22.54

Weight (kDa)

6.3

Isoelectric Point (pI)

42.13

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22370
fragaria_vesca	FvH4_5g37300 FvH4_5g37300 FvH4_5g37300
malus_domestica	MD15G1369800.v1.1
prunus_persica	Prupe.1G517500_v2.0.a1 Prupe.1G517500_v2.0.a1 Prupe.1G518900_v2.0.a1 Prupe.1G518900_v2.0.a1 Prupe.1G518900_v2.0.a1
pyrus_communis	pycom15g33090
rosa_chinensis	RchiOBHm_Chr5g0034471 RchiOBHm_Chr5g0038311 RchiOBHm_Chr7g0238871 RchiOBHm_Chr7g0238911
rosa_laevigata	RLG00000000798 RLG00000033846
rosa_multiflora	Rmu_sc0000764.1_g000001 Rmu_sc0004132.1_g000018 Rmu_sc0005542.1_g000003 Rmu_sc0007101.1_g000002
rosa_roxburghii	Rroxscaffold_1G00042690 Rroxscaffold_3G00221500
rosa_rugosa	Rorug05G0194800 Rorug05G0194800 Rorug05G0194800 Rorug05G0194900 Rorug07G0323900 Rorug07G0323900
rosa_samantha	Rh5AG238300 Rh5AG259300 Rh5BG263100 Rh5CG269100 Rh5CG317600 Rh5DG246600 Rh5DG272100 Rh7AG478400 Rh7BG450900
rosa_wichuraiana	Rw5G021760 Rw5G024270 Rw7G039940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	203
Acc36I	ACCTGC	1 cut(s)	203
AccBSI	CCGCTC	1 cut(s)	535
AciI	CCGC	3 cut(s)	533, 585, 597
AclWI	GGATC	1 cut(s)	318
AcsI	RAATTY	1 cut(s)	558
AcuI	CTGAAG	2 cut(s)	29, 510
AfaI	GTAC	2 cut(s)	126, 625
AfiI	CCNNNNNNNGG	1 cut(s)	116
AgsI	TTSAA	5 cut(s)	26, 79, 158, 455, 564
AjnI	CCWGG	1 cut(s)	553
AluBI	AGCT	2 cut(s)	122, 422
AluI	AGCT	2 cut(s)	122, 422
AlwI	GGATC	1 cut(s)	318
AlwNI	CAGNNNCTG	2 cut(s)	218, 467
Ama87I	CYCGRG	1 cut(s)	437
AoxI	GGCC	1 cut(s)	106
ApeKI	GCWGC	4 cut(s)	16, 587, 590, 593
ApoI	RAATTY	1 cut(s)	558
AspS9I	GGNCC	2 cut(s)	82, 107
AsuC2I	CCSGG	2 cut(s)	438, 439
AvaI	CYCGRG	1 cut(s)	437
AvaII	GGWCC	1 cut(s)	82
BbvI	GCAGC	4 cut(s)	28, 574, 577, 580
BccI	CCATC	1 cut(s)	608
BcgI	CGANNNNNNTGC	4 cut(s)	129, 163, 509, 543
BciT130I	CCWGG	1 cut(s)	555
BciVI	GTATCC	1 cut(s)	435
BcnI	CCSGG	2 cut(s)	438, 439
BfuAI	ACCTGC	1 cut(s)	203
BfuI	GTATCC	1 cut(s)	435
BisI	GCNGC	6 cut(s)	17, 585, 588, 591, 594, 597
BlpI	GCTNAGC	1 cut(s)	219
BlsI	GCNGC	6 cut(s)	18, 586, 589, 592, 595, 598
Bme1390I	CCNGG	3 cut(s)	438, 439, 555
Bme18I	GGWCC	1 cut(s)	82
BmeT110I	CYCGRG	1 cut(s)	437
BmgT120I	GGNCC	2 cut(s)	82, 107
BmrFI	CCNGG	3 cut(s)	438, 439, 555
BmrI	ACTGGG	1 cut(s)	576
BmsI	GCATC	3 cut(s)	384, 479, 608
BmuI	ACTGGG	1 cut(s)	576
BplI	GAGNNNNNCTC	2 cut(s)	212, 244
Bpu1102I	GCTNAGC	1 cut(s)	219
BpuEI	CTTGAG	1 cut(s)	53
BpuMI	CCSGG	2 cut(s)	438, 439
BsaJI	CCNNGG	1 cut(s)	437
Bsc4I	CCNNNNNNNGG	1 cut(s)	116
Bse1I	ACTGG	1 cut(s)	571
BseBI	CCWGG	1 cut(s)	555
BseDI	CCNNGG	1 cut(s)	437
BseLI	CCNNNNNNNGG	1 cut(s)	116
BseMII	CTCAG	4 cut(s)	123, 210, 243, 314
BseNI	ACTGG	1 cut(s)	571
BseXI	GCAGC	4 cut(s)	28, 574, 577, 580
BsgI	GTGCAG	1 cut(s)	231
BshFI	GGCC	1 cut(s)	108
BsiHKCI	CYCGRG	1 cut(s)	437
BsiSI	CCGG	1 cut(s)	438
BslFI	GGGAC	1 cut(s)	410
BslI	CCNNNNNNNGG	1 cut(s)	116
BsmFI	GGGAC	1 cut(s)	410
BsnI	GGCC	1 cut(s)	108
BsoBI	CYCGRG	1 cut(s)	437
Bsp143I	GATC	2 cut(s)	249, 310
Bsp1720I	GCTNAGC	1 cut(s)	219
BspACI	CCGC	3 cut(s)	533, 585, 597
BspANI	GGCC	1 cut(s)	108
BspCNI	CTCAG	4 cut(s)	124, 211, 242, 315
BspHI	TCATGA	1 cut(s)	313
BspMI	ACCTGC	1 cut(s)	203
BspPI	GGATC	1 cut(s)	318
BsrBI	CCGCTC	1 cut(s)	535
BsrI	ACTGG	1 cut(s)	571
BssECI	CCNNGG	1 cut(s)	437
BssMI	GATC	2 cut(s)	249, 310
Bst2UI	CCWGG	1 cut(s)	555
Bst4CI	ACNGT	5 cut(s)	181, 247, 370, 376, 447
BstC8I	GCNNGC	2 cut(s)	265, 359
BstDEI	CTNAG	5 cut(s)	115, 132, 219, 229, 323
BstKTI	GATC	2 cut(s)	252, 313
BstMBI	GATC	2 cut(s)	249, 310
BstMWI	GCNNNNNNNGC	4 cut(s)	264, 590, 593, 596
BstNI	CCWGG	1 cut(s)	555
BstNSI	RCATGY	1 cut(s)	23
BstSCI	CCNGG	3 cut(s)	436, 437, 553
BstV1I	GCAGC	4 cut(s)	28, 574, 577, 580
BsuI	GTATCC	1 cut(s)	435
BsuRI	GGCC	1 cut(s)	108
BtgZI	GCGATG	1 cut(s)	215
BtsI	GCAGTG	1 cut(s)	510
BtsIMutI	CAGTG	1 cut(s)	510
BveI	ACCTGC	1 cut(s)	203
Cac8I	GCNNGC	2 cut(s)	265, 359
CaiI	CAGNNNCTG	2 cut(s)	218, 467
CciI	TCATGA	1 cut(s)	313
Cfr13I	GGNCC	2 cut(s)	82, 107
Cfr9I	CCCGGG	1 cut(s)	437
CseI	GACGC	1 cut(s)	486
Csp6I	GTAC	2 cut(s)	125, 624
CviAII	CATG	5 cut(s)	20, 86, 174, 314, 607
CviJI	RGCY	6 cut(s)	29, 108, 122, 300, 422, 464
CviKI_1	RGCY	6 cut(s)	29, 108, 122, 300, 422, 464
CviQI	GTAC	2 cut(s)	125, 624
DdeI	CTNAG	5 cut(s)	115, 132, 219, 229, 323
DpnI	GATC	2 cut(s)	251, 312
DpnII	GATC	2 cut(s)	249, 310
Eco47I	GGWCC	1 cut(s)	82
Eco57I	CTGAAG	2 cut(s)	29, 510
Eco88I	CYCGRG	1 cut(s)	437
EcoRII	CCWGG	1 cut(s)	553
FaeI	CATG	5 cut(s)	23, 89, 177, 317, 610
FaiI	YATR	9 cut(s)	21, 87, 94, 175, 291, 315, 486, 608, 634
FaqI	GGGAC	1 cut(s)	410
FatI	CATG	5 cut(s)	19, 85, 173, 313, 606
Fnu4HI	GCNGC	6 cut(s)	17, 585, 588, 591, 594, 597
Fsp4HI	GCNGC	6 cut(s)	17, 585, 588, 591, 594, 597
GluI	GCNGC	6 cut(s)	17, 585, 588, 591, 594, 597
HaeIII	GGCC	1 cut(s)	108
HapII	CCGG	1 cut(s)	438
HgaI	GACGC	1 cut(s)	486
Hin1II	CATG	5 cut(s)	23, 89, 177, 317, 610
HinfI	GANTC	2 cut(s)	37, 327
HpaII	CCGG	1 cut(s)	438
Hpy166II	GTNNAC	1 cut(s)	7
Hpy188I	TCNGA	3 cut(s)	133, 478, 613
Hpy188III	TCNNGA	3 cut(s)	155, 314, 349
Hpy8I	GTNNAC	1 cut(s)	7
Hpy99I	CGWCG	1 cut(s)	502
HpyAV	CCTTC	2 cut(s)	73, 138
HpyCH4III	ACNGT	5 cut(s)	181, 247, 370, 376, 447
HpyCH4IV	ACGT	1 cut(s)	9
HpyCH4V	TGCA	7 cut(s)	16, 150, 212, 293, 470, 530, 541
HpyF10VI	GCNNNNNNNGC	4 cut(s)	264, 590, 593, 596
HpyF3I	CTNAG	5 cut(s)	115, 132, 219, 229, 323
HpySE526I	ACGT	1 cut(s)	9
Hsp92II	CATG	5 cut(s)	23, 89, 177, 317, 610
Kzo9I	GATC	2 cut(s)	249, 310
LmnI	GCTCC	2 cut(s)	119, 540
Lsp1109I	GCAGC	4 cut(s)	28, 574, 577, 580
LweI	GCATC	3 cut(s)	384, 479, 608
MaeII	ACGT	1 cut(s)	9
MaeIII	GTNAC	4 cut(s)	318, 370, 430, 457
MalI	GATC	2 cut(s)	251, 312
MbiI	CCGCTC	1 cut(s)	535
MboI	GATC	2 cut(s)	249, 310
MboII	GAAGA	2 cut(s)	32, 35
MluCI	AATT	1 cut(s)	558
MlyI	GAGTC	1 cut(s)	336
MmeI	TCCRAC	1 cut(s)	288
MnlI	CCTC	4 cut(s)	127, 177, 200, 347
MseI	TTAA	2 cut(s)	99, 387
MslI	CAYNNNNRTG	1 cut(s)	362
MspA1I	CMGCKG	1 cut(s)	587
MspI	CCGG	1 cut(s)	438
MspR9I	CCNGG	3 cut(s)	438, 439, 555
MvaI	CCWGG	1 cut(s)	555
MwoI	GCNNNNNNNGC	4 cut(s)	264, 590, 593, 596
NciI	CCSGG	2 cut(s)	438, 439
NdeII	GATC	2 cut(s)	249, 310
NlaIII	CATG	5 cut(s)	23, 89, 177, 317, 610
NmuCI	GTSAC	1 cut(s)	370
NspI	RCATGY	1 cut(s)	23
PagI	TCATGA	1 cut(s)	313
PaqCI	CACCTGC	1 cut(s)	203
PfeI	GAWTC	1 cut(s)	37
PflFI	GACNNNGTC	1 cut(s)	376
PkrI	GCNGC	6 cut(s)	18, 586, 589, 592, 595, 598
PleI	GAGTC	1 cut(s)	335
PpsI	GAGTC	1 cut(s)	335
Psp6I	CCWGG	1 cut(s)	553
PspGI	CCWGG	1 cut(s)	553
PspPI	GGNCC	2 cut(s)	82, 107
PstNI	CAGNNNCTG	2 cut(s)	218, 467
PsyI	GACNNNGTC	1 cut(s)	376
RsaI	GTAC	2 cut(s)	126, 625
RsaNI	GTAC	2 cut(s)	125, 624
RseI	CAYNNNNRTG	1 cut(s)	362
SaqAI	TTAA	2 cut(s)	99, 387
SatI	GCNGC	6 cut(s)	17, 585, 588, 591, 594, 597
Sau3AI	GATC	2 cut(s)	249, 310
Sau96I	GGNCC	2 cut(s)	82, 107
SchI	GAGTC	1 cut(s)	336
ScrFI	CCNGG	3 cut(s)	438, 439, 555
SfaNI	GCATC	3 cut(s)	384, 479, 608
SinI	GGWCC	1 cut(s)	82
SmaI	CCCGGG	1 cut(s)	439
SmiMI	CAYNNNNRTG	1 cut(s)	362
SmlI	CTYRAG	1 cut(s)	32
SmoI	CTYRAG	1 cut(s)	32
Sse9I	AATT	1 cut(s)	558
SsiI	CCGC	3 cut(s)	533, 585, 597
StyD4I	CCNGG	3 cut(s)	436, 437, 553
TaaI	ACNGT	5 cut(s)	181, 247, 370, 376, 447
TaiI	ACGT	1 cut(s)	12
TaqI	TCGA	2 cut(s)	139, 252
TasI	AATT	1 cut(s)	558
TauI	GCSGC	2 cut(s)	587, 599
TfiI	GAWTC	1 cut(s)	37
Tru1I	TTAA	2 cut(s)	99, 387
Tru9I	TTAA	2 cut(s)	99, 387
TscAI	CASTG	1 cut(s)	510
TseFI	GTSAC	1 cut(s)	370
TseI	GCWGC	4 cut(s)	16, 587, 590, 593
Tsp45I	GTSAC	1 cut(s)	370
TspDTI	ATGAA	1 cut(s)	432
TspMI	CCCGGG	1 cut(s)	437
TspRI	CASTG	1 cut(s)	510
Tth111I	GACNNNGTC	1 cut(s)	376
VpaK11BI	GGWCC	1 cut(s)	82
XapI	RAATTY	1 cut(s)	558
XceI	RCATGY	1 cut(s)	23
XmaI	CCCGGG	1 cut(s)	437

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.