Rorug05G0194800

mediator of RNA polymerase II transcription subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
OG0002479
Physical Location & Seq
Reverse (-)
19127598 .. 19131153
3556 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0194800.1

Sequence Viewer

Length: 1140 bp
ATGCCGCGATCAAGGGGATCTGAAGTGGTTCAAAAGCCAACTCTTCGAGGTTCACATAAGCTGAGGACTTCAAGCTCTGATTCAGATCCACTGCATCATCGACCAATCACTGACCGAAGTCCAAAGCTAGGAGATCGACGTTCCCCAAGAGGTTCACAATCGGATCCACTAAGCCAAAAAAAACTTGGAACCCGCCTTGCTGATTTAGAATCTCAACTTGGCCAAGCACAAGATGAGCTAAAGAGTCTAAAAGAACAATTGGCTTCAGCTGAAGCTGCAAAGAAAGAAGCCCAAGAAAAGCTGGACAAGAAAGCTAAGAAACCAGTTGTGACTTCAGGGCCAGTGAAAGTCCGTGAAACACATCCTCCATCGGAAAGTGAAGAATCTATCAAAACAGATAGCTGTCCCTCAGATGACAACAGCCAAGGGGAAACTGATGTCTTTGAAGTCCCTGCAGAAAAAGTTAAAGCTGAGACAAAGGTTGATCCTAGCGACACTGATCAGGTGGAAGAAGAAACCAAACCAATAGATATTTCAGCTGAACCACCATTGGTTTCGGAGCCAGAGAAGTCAGCCTTCCATGACTTGGCTTTGAAAAATGAAGAGATAGACATGCTAAAAGCCAAGTTGGAAGAGAAGGAAAAAGAGGCAGAGGTGTTTGGTCAAGAAAATCAGAGTTTAAAGAATCAAGTACAGGAAGCAGCTACAAACATCTCAACTGTTGAAGCAAAGGAAAAGGAAATGGCCTTGAAGTTGAGCAAGTTTGAAGAAGAGCTGGAAGCAAGTAAAGCTAATGCAGCACAGTTGAGTGAGAAGCTGAAAGCAACAGAAGATGCAAAGGAAGCACTGGAAGCTGAGATGAAGAGGATGAGAGTGCAGACAGAGCAGTGGAAAAAGGCCGCAGATGCTGCTGCAGCAATACTTGCTGGGGGTGTGGAGATGAATGGGAGGATTTCCGAGAGGTGTGGCTCCATGGACAAGCACTTTAATGGAGTATTTGAGCCCCCAGGTGGTGGCTATGCTGGTTTTTTGGGATCACCTGCTGCTGATGATTTGGATGATGGTTTTGGTAGTGGAAAACGAAAGGGTTCAGGGATAAAAATGTTTGGTGACTTGTGGAGAAAGAAGGGCCAGAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000414 GO:0000428 GO:0001101 GO:0002831 GO:0003002 GO:0003006 GO:0003674 GO:0003712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006353 GO:0006355 GO:0006366 GO:0006369 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009966 GO:0009987 GO:0010033 GO:0010219 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0010646 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016591 GO:0016592 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0023051 GO:0030880 GO:0031047 GO:0031050 GO:0031056 GO:0031060 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031399 GO:0031554 GO:0031974 GO:0031981 GO:0032101 GO:0032268 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032991 GO:0033043 GO:0033044 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0040034 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043244 GO:0043254 GO:0043331 GO:0043900 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048442 GO:0048443 GO:0048464 GO:0048465 GO:0048466 GO:0048467 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051252 GO:0051253 GO:0051716 GO:0055029 GO:0060255 GO:0061458 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090567 GO:0090575 GO:0097305 GO:0097659 GO:0099402 GO:0140110 GO:1900150 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1902275 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000026 GO:2000028 GO:2000031 GO:2000112 GO:2000113 GO:2000142 GO:2000241 GO:2001023 GO:2001038 GO:2001141 GO:2001253
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

379

Amino Acids

41.42

Weight (kDa)

5.43

Isoelectric Point (pI)

47.37

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1048
Acc36I ACCTGC 1 cut(s) 1048
AccB7I CCANNNNNTGG 2 cut(s) 586, 1013
AccII CGCG 1 cut(s) 7
AciI CCGC 3 cut(s) 5, 193, 900
AclWI GGATC 6 cut(s) 25, 80, 158, 171, 479, 1042
AcoI YGGCCR 1 cut(s) 220
AcuI CTGAAG 4 cut(s) 42, 249, 291, 318
AfaI GTAC 1 cut(s) 693
AfiI CCNNNNNNNGG 4 cut(s) 128, 586, 1010, 1013
AgsI TTSAA 7 cut(s) 32, 72, 446, 595, 725, 751, 767
AjnI CCWGG 1 cut(s) 1006
AjuI GAANNNNNNNTTGG 4 cut(s) 201, 233, 517, 549
Alw26I GTCTC 1 cut(s) 467
AlwI GGATC 6 cut(s) 25, 80, 158, 171, 479, 1042
AlwNI CAGNNNCTG 1 cut(s) 908
AoxI GGCC 5 cut(s) 220, 338, 744, 897, 1129
ApeKI GCWGC 7 cut(s) 275, 701, 797, 908, 911, 914, 1043
Asp700I GAANNNNTTC 2 cut(s) 27, 1087
AspS9I GGNCC 2 cut(s) 338, 1129
AsuHPI GGTGA 2 cut(s) 1029, 1121
BalI TGGCCA 1 cut(s) 222
BamHI GGATCC 1 cut(s) 163
BanII GRGCYC 1 cut(s) 1005
BbvCI CCTCAGC 1 cut(s) 62
BbvI GCAGC 7 cut(s) 262, 713, 809, 895, 898, 926, 1030
BccI CCATC 2 cut(s) 376, 1055
BciT130I CCWGG 1 cut(s) 1008
BclI TGATCA 1 cut(s) 499
BcoDI GTCTC 1 cut(s) 467
BfaI CTAG 2 cut(s) 128, 489
BfmI CTRYAG 2 cut(s) 453, 912
BfuAI ACCTGC 1 cut(s) 1048
BisI GCNGC 9 cut(s) 5, 276, 702, 798, 900, 909, 912, 915, 1044
BlsI GCNGC 9 cut(s) 6, 277, 703, 799, 901, 910, 913, 916, 1045
Bme1390I CCNGG 1 cut(s) 1008
BmgT120I GGNCC 2 cut(s) 338, 1129
BmiI GGNNCC 4 cut(s) 165, 190, 561, 970
BmrFI CCNGG 1 cut(s) 1008
BmsI GCATC 3 cut(s) 103, 823, 895
BoxI GACNNNNGTC 1 cut(s) 117
Bpu10I CCTNAGC 1 cut(s) 62
BsaBI GATNNNNATC 1 cut(s) 84
BsaJI CCNNGG 3 cut(s) 424, 972, 1006
BsaXI ACNNNNNCTCC 2 cut(s) 349, 379
Bsc4I CCNNNNNNNGG 4 cut(s) 128, 586, 1010, 1013
Bse1I ACTGG 3 cut(s) 323, 341, 852
Bse8I GATNNNNATC 1 cut(s) 84
BseBI CCWGG 1 cut(s) 1008
BseDI CCNNGG 3 cut(s) 424, 972, 1006
BseGI GGATG 3 cut(s) 361, 873, 1063
BseJI GATNNNNATC 1 cut(s) 84
BseLI CCNNNNNNNGG 4 cut(s) 128, 586, 1010, 1013
BseMII CTCAG 4 cut(s) 53, 423, 462, 846
BseNI ACTGG 3 cut(s) 323, 341, 852
BseXI GCAGC 7 cut(s) 262, 713, 809, 895, 898, 926, 1030
BseYI CCCAGC 1 cut(s) 926
BsgI GTGCAG 1 cut(s) 896
Bsh1236I CGCG 1 cut(s) 7
BshFI GGCC 5 cut(s) 222, 340, 746, 899, 1131
BslFI GGGAC 2 cut(s) 390, 434
BslI CCNNNNNNNGG 4 cut(s) 128, 586, 1010, 1013
BsmAI GTCTC 1 cut(s) 467
BsmFI GGGAC 2 cut(s) 390, 434
BsnI GGCC 5 cut(s) 222, 340, 746, 899, 1131
Bsp1286I GDGCHC 1 cut(s) 1005
Bsp143I GATC 8 cut(s) 8, 17, 85, 133, 163, 484, 499, 1034
Bsp19I CCATGG 1 cut(s) 972
BspACI CCGC 3 cut(s) 5, 193, 900
BspANI GGCC 5 cut(s) 222, 340, 746, 899, 1131
BspCNI CTCAG 4 cut(s) 54, 422, 463, 847
BspFNI CGCG 1 cut(s) 7
BspLI GGNNCC 4 cut(s) 165, 190, 561, 970
BspMAI CTGCAG 2 cut(s) 457, 916
BspMI ACCTGC 1 cut(s) 1048
BspPI GGATC 6 cut(s) 25, 80, 158, 171, 479, 1042
BspQI GCTCTTC 1 cut(s) 765
BsrI ACTGG 3 cut(s) 323, 341, 852
BssECI CCNNGG 3 cut(s) 424, 972, 1006
BssMI GATC 8 cut(s) 8, 17, 85, 133, 163, 484, 499, 1034
BssT1I CCWWGG 2 cut(s) 424, 972
Bst2UI CCWGG 1 cut(s) 1008
Bst4CI ACNGT 2 cut(s) 721, 804
Bst6I CTCTTC 5 cut(s) 48, 597, 627, 765, 857
BstAPI GCANNNNNTGC 2 cut(s) 908, 923
BstDEI CTNAG 6 cut(s) 62, 170, 315, 409, 471, 855
BstDSI CCRYGG 1 cut(s) 972
BstF5I GGATG 3 cut(s) 361, 873, 1063
BstFNI CGCG 1 cut(s) 7
BstKTI GATC 8 cut(s) 11, 20, 88, 136, 166, 487, 502, 1037
BstMAI GTCTC 1 cut(s) 467
BstMBI GATC 8 cut(s) 8, 17, 85, 133, 163, 484, 499, 1034
BstNI CCWGG 1 cut(s) 1008
BstNSI RCATGY 1 cut(s) 616
BstPAI GACNNNNGTC 1 cut(s) 117
BstSCI CCNGG 1 cut(s) 1006
BstSFI CTRYAG 2 cut(s) 453, 912
BstUI CGCG 1 cut(s) 7
BstV1I GCAGC 7 cut(s) 262, 713, 809, 895, 898, 926, 1030
BstX2I RGATCY 3 cut(s) 17, 85, 163
BstYI RGATCY 3 cut(s) 17, 85, 163
BsuRI GGCC 5 cut(s) 222, 340, 746, 899, 1131
BtgI CCRYGG 1 cut(s) 972
BtsCI GGATG 3 cut(s) 361, 873, 1063
BtsI GCAGTG 2 cut(s) 89, 893
BtsIMutI CAGTG 6 cut(s) 89, 108, 348, 495, 845, 893
BveI ACCTGC 1 cut(s) 1048
CaiI CAGNNNCTG 1 cut(s) 908
Cfr13I GGNCC 2 cut(s) 338, 1129
Csp6I GTAC 1 cut(s) 692
CviAII CATG 3 cut(s) 581, 613, 973
CviQI GTAC 1 cut(s) 692
DdeI CTNAG 6 cut(s) 62, 170, 315, 409, 471, 855
DpnI GATC 8 cut(s) 10, 19, 87, 135, 165, 486, 501, 1036
DpnII GATC 8 cut(s) 8, 17, 85, 133, 163, 484, 499, 1034
DraI TTTAAA 1 cut(s) 681
EaeI YGGCCR 1 cut(s) 220
Eam1104I CTCTTC 5 cut(s) 48, 597, 627, 765, 857
EarI CTCTTC 5 cut(s) 48, 597, 627, 765, 857
Eco130I CCWWGG 2 cut(s) 424, 972
Eco24I GRGCYC 1 cut(s) 1005
Eco57I CTGAAG 4 cut(s) 42, 249, 291, 318
EcoRII CCWGG 1 cut(s) 1006
EcoT14I CCWWGG 2 cut(s) 424, 972
EcoT38I GRGCYC 1 cut(s) 1005
ErhI CCWWGG 2 cut(s) 424, 972
FaeI CATG 3 cut(s) 584, 616, 976
FaiI YATR 5 cut(s) 57, 582, 614, 974, 1020
FalI AAGNNNNNCTT 2 cut(s) 560, 592
FaqI GGGAC 2 cut(s) 390, 434
FatI CATG 3 cut(s) 580, 612, 972
FauI CCCGC 1 cut(s) 200
FbaI TGATCA 1 cut(s) 499
Fnu4HI GCNGC 9 cut(s) 5, 276, 702, 798, 900, 909, 912, 915, 1044
FokI GGATG 3 cut(s) 348, 880, 1070
FriOI GRGCYC 1 cut(s) 1005
Fsp4HI GCNGC 9 cut(s) 5, 276, 702, 798, 900, 909, 912, 915, 1044
FspBI CTAG 2 cut(s) 128, 489
GluI GCNGC 9 cut(s) 5, 276, 702, 798, 900, 909, 912, 915, 1044
GsaI CCCAGC 1 cut(s) 930
HaeIII GGCC 5 cut(s) 222, 340, 746, 899, 1131
Hin1II CATG 3 cut(s) 584, 616, 976
HinfI GANTC 5 cut(s) 80, 209, 244, 383, 685
HphI GGTGA 2 cut(s) 1029, 1121
Hpy166II GTNNAC 2 cut(s) 53, 155
Hpy188I TCNGA 9 cut(s) 22, 79, 85, 163, 373, 412, 559, 675, 958
Hpy188III TCNNGA 1 cut(s) 665
Hpy8I GTNNAC 2 cut(s) 53, 155
Hpy99I CGWCG 1 cut(s) 141
HpyAV CCTTC 3 cut(s) 586, 631, 1120
HpyCH4III ACNGT 2 cut(s) 721, 804
HpyCH4IV ACGT 1 cut(s) 139
HpyCH4V TGCA 7 cut(s) 94, 278, 455, 797, 836, 877, 914
HpyF3I CTNAG 6 cut(s) 62, 170, 315, 409, 471, 855
HpySE526I ACGT 1 cut(s) 139
Hsp92II CATG 3 cut(s) 584, 616, 976
Ksp22I TGATCA 1 cut(s) 499
Kzo9I GATC 8 cut(s) 8, 17, 85, 133, 163, 484, 499, 1034
LguI GCTCTTC 1 cut(s) 765
LmnI GCTCC 2 cut(s) 559, 974
Lsp1109I GCAGC 7 cut(s) 262, 713, 809, 895, 898, 926, 1030
LweI GCATC 3 cut(s) 103, 823, 895
MaeI CTAG 2 cut(s) 128, 489
MaeII ACGT 1 cut(s) 139
MaeIII GTNAC 2 cut(s) 328, 1109
MalI GATC 8 cut(s) 10, 19, 87, 135, 165, 486, 501, 1036
MboI GATC 8 cut(s) 8, 17, 85, 133, 163, 484, 499, 1034
MfeI CAATTG 1 cut(s) 257
MflI RGATCY 3 cut(s) 17, 85, 163
MhlI GDGCHC 1 cut(s) 1005
MlsI TGGCCA 1 cut(s) 222
MluCI AATT 1 cut(s) 257
MluNI TGGCCA 1 cut(s) 222
MlyI GAGTC 1 cut(s) 253
MmeI TCCRAC 1 cut(s) 609
Mox20I TGGCCA 1 cut(s) 222
MroXI GAANNNNTTC 2 cut(s) 27, 1087
MscI TGGCCA 1 cut(s) 222
MseI TTAA 3 cut(s) 465, 680, 987
MslI CAYNNNNRTG 1 cut(s) 987
Msp20I TGGCCA 1 cut(s) 222
MspA1I CMGCKG 2 cut(s) 269, 539
MspR9I CCNGG 1 cut(s) 1008
MunI CAATTG 1 cut(s) 257
MvaI CCWGG 1 cut(s) 1008
MvnI CGCG 1 cut(s) 7
NcoI CCATGG 1 cut(s) 972
NdeII GATC 8 cut(s) 8, 17, 85, 133, 163, 484, 499, 1034
NlaIII CATG 3 cut(s) 584, 616, 976
NlaIV GGNNCC 4 cut(s) 165, 190, 561, 970
NmuCI GTSAC 2 cut(s) 328, 1109
NspI RCATGY 1 cut(s) 616
PaqCI CACCTGC 1 cut(s) 1048
PciSI GCTCTTC 1 cut(s) 765
PdmI GAANNNNTTC 2 cut(s) 27, 1087
PfeI GAWTC 4 cut(s) 80, 209, 383, 685
PflMI CCANNNNNTGG 2 cut(s) 586, 1013
PkrI GCNGC 9 cut(s) 6, 277, 703, 799, 901, 910, 913, 916, 1045
PleI GAGTC 1 cut(s) 252
PpsI GAGTC 1 cut(s) 252
PshAI GACNNNNGTC 1 cut(s) 117
Psp6I CCWGG 1 cut(s) 1006
PspFI CCCAGC 1 cut(s) 926
PspGI CCWGG 1 cut(s) 1006
PspN4I GGNNCC 4 cut(s) 165, 190, 561, 970
PspPI GGNCC 2 cut(s) 338, 1129
PstI CTGCAG 2 cut(s) 457, 916
PstNI CAGNNNCTG 1 cut(s) 908
PsuI RGATCY 3 cut(s) 17, 85, 163
PvuII CAGCTG 2 cut(s) 269, 539
RsaI GTAC 1 cut(s) 693
RsaNI GTAC 1 cut(s) 692
RseI CAYNNNNRTG 1 cut(s) 987
SapI GCTCTTC 1 cut(s) 765
SaqAI TTAA 3 cut(s) 465, 680, 987
SatI GCNGC 9 cut(s) 5, 276, 702, 798, 900, 909, 912, 915, 1044
Sau3AI GATC 8 cut(s) 8, 17, 85, 133, 163, 484, 499, 1034
Sau96I GGNCC 2 cut(s) 338, 1129
SchI GAGTC 1 cut(s) 253
ScrFI CCNGG 1 cut(s) 1008
SduI GDGCHC 1 cut(s) 1005
SfaNI GCATC 3 cut(s) 103, 823, 895
SfcI CTRYAG 2 cut(s) 453, 912
SmiMI CAYNNNNRTG 1 cut(s) 987
Sse9I AATT 1 cut(s) 257
SsiI CCGC 3 cut(s) 5, 193, 900
SspMI CTAG 2 cut(s) 128, 489
StyD4I CCNGG 1 cut(s) 1006
StyI CCWWGG 2 cut(s) 424, 972
TaaI ACNGT 2 cut(s) 721, 804
TaiI ACGT 1 cut(s) 142
TaqI TCGA 3 cut(s) 46, 100, 136
TaqII GACCGA 1 cut(s) 129
TasI AATT 1 cut(s) 257
TatI WGTACW 1 cut(s) 691
TauI GCSGC 2 cut(s) 7, 902
TfiI GAWTC 4 cut(s) 80, 209, 383, 685
Tru1I TTAA 3 cut(s) 465, 680, 987
Tru9I TTAA 3 cut(s) 465, 680, 987
TscAI CASTG 6 cut(s) 96, 115, 348, 502, 852, 893
TseFI GTSAC 2 cut(s) 328, 1109
TseI GCWGC 7 cut(s) 275, 701, 797, 908, 911, 914, 1043
Tsp45I GTSAC 2 cut(s) 328, 1109
TspDTI ATGAA 3 cut(s) 615, 875, 956
TspGWI ACGGA 1 cut(s) 341
TspRI CASTG 6 cut(s) 96, 115, 348, 502, 852, 893
Van91I CCANNNNNTGG 2 cut(s) 586, 1013
XceI RCATGY 1 cut(s) 616
XcmI CCANNNNNNNNNTGG 1 cut(s) 182
XmnI GAANNNNTTC 2 cut(s) 27, 1087
XspI CTAG 2 cut(s) 128, 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.