Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0002479

Physical Location & Seq

Genomic Coordinates Reverse (-)

61028558 .. 61030039

Gene Structure 1482 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00042690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 555 bp

ATGGAGTGCGTGGTTCAGGGAATCATAGAAACACAGCATGTTGAAGCCCTTGAGATTCTTCTTCAGGGTCTTTGTGGTGTTCGCAGAGAACCTTTGAAGGTCCATGAGATATGCCTTAAAAGTGGCCCAAACTTAGGAGCTGTACCTTCTGAGGTTCGACTTATTTGCAATCTTGAACAAACTGAACCTACATGGGACTGTGAGGTTCGTGGGGGTGCGATGAGAGGTGCAGGTGCTGAGCAACTCTCAGTTTTAGTAAGAACTGTGATCGAAAGCAAAGCAAGCAAGAATGTGCTTCGCTTATTTTATGCACTTGGCTACAAGTTGGATCATGAGTTACTGAGGGTTGGGTTTGCGTTCCATTTCCAGAGAGGCACGCAGATGACTGTGACTGTGTCATCAGTTAATAAGATGCCACAACTACACAATACAGATGAAGCTGTCCCTGTAACTCCTGGGATACAGTTGGTTGAAGTTACAGCCCCTGCATCATCTGAAACTTATACTGAAGTTGCGTCGGCAGTGTCATCATTTTGCGAATATCTTGCACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000414 GO:0000428 GO:0001101 GO:0002831 GO:0003002 GO:0003006 GO:0003674 GO:0003712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006353 GO:0006355 GO:0006366 GO:0006369 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009966 GO:0009987 GO:0010033 GO:0010219 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0010646 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016591 GO:0016592 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0023051 GO:0030880 GO:0031047 GO:0031050 GO:0031056 GO:0031060 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031399 GO:0031554 GO:0031974 GO:0031981 GO:0032101 GO:0032268 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032991 GO:0033043 GO:0033044 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0040034 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043244 GO:0043254 GO:0043331 GO:0043900 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048442 GO:0048443 GO:0048464 GO:0048465 GO:0048466 GO:0048467 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051252 GO:0051253 GO:0051716 GO:0055029 GO:0060255 GO:0061458 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090567 GO:0090575 GO:0097305 GO:0097659 GO:0099402 GO:0140110 GO:1900150 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1902275 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000026 GO:2000028 GO:2000031 GO:2000112 GO:2000113 GO:2000142 GO:2000241 GO:2001023 GO:2001038 GO:2001141 GO:2001253

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

184

Amino Acids

20.09

Weight (kDa)

5.38

Isoelectric Point (pI)

46.81

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22370
fragaria_vesca	FvH4_5g37300 FvH4_5g37300 FvH4_5g37300
malus_domestica	MD15G1369800.v1.1
prunus_persica	Prupe.1G517500_v2.0.a1 Prupe.1G517500_v2.0.a1 Prupe.1G518900_v2.0.a1 Prupe.1G518900_v2.0.a1 Prupe.1G518900_v2.0.a1
pyrus_communis	pycom15g33090
rosa_chinensis	RchiOBHm_Chr5g0034471 RchiOBHm_Chr5g0038311 RchiOBHm_Chr7g0238871 RchiOBHm_Chr7g0238911
rosa_laevigata	RLG00000000798 RLG00000033846
rosa_multiflora	Rmu_sc0000764.1_g000001 Rmu_sc0004132.1_g000018 Rmu_sc0005542.1_g000003 Rmu_sc0007101.1_g000002
rosa_roxburghii	Rroxscaffold_1G00042690 Rroxscaffold_3G00221500
rosa_rugosa	Rorug05G0194800 Rorug05G0194800 Rorug05G0194800 Rorug05G0194900 Rorug07G0323900 Rorug07G0323900
rosa_samantha	Rh5AG238300 Rh5AG259300 Rh5BG263100 Rh5CG269100 Rh5CG317600 Rh5DG246600 Rh5DG272100 Rh7AG478400 Rh7BG450900
rosa_wichuraiana	Rw5G021760 Rw5G024270 Rw7G039940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	221
Acc36I	ACCTGC	1 cut(s)	221
AclWI	GGATC	1 cut(s)	336
AcuI	CTGAAG	2 cut(s)	47, 528
AfaI	GTAC	1 cut(s)	144
AfiI	CCNNNNNNNGG	1 cut(s)	134
AgsI	TTSAA	4 cut(s)	44, 97, 176, 473
AjnI	CCWGG	1 cut(s)	454
AluBI	AGCT	2 cut(s)	140, 440
AluI	AGCT	2 cut(s)	140, 440
AlwI	GGATC	1 cut(s)	336
AlwNI	CAGNNNCTG	2 cut(s)	236, 485
AoxI	GGCC	1 cut(s)	124
AspS9I	GGNCC	2 cut(s)	100, 125
AvaII	GGWCC	1 cut(s)	100
BcgI	CGANNNNNNTGC	3 cut(s)	147, 181, 527
BciT130I	CCWGG	1 cut(s)	456
BciVI	GTATCC	1 cut(s)	453
BfuAI	ACCTGC	1 cut(s)	221
BfuI	GTATCC	1 cut(s)	453
BlpI	GCTNAGC	1 cut(s)	237
Bme1390I	CCNGG	1 cut(s)	456
Bme18I	GGWCC	1 cut(s)	100
BmgT120I	GGNCC	2 cut(s)	100, 125
BmrFI	CCNGG	1 cut(s)	456
BmsI	GCATC	2 cut(s)	402, 497
BplI	GAGNNNNNCTC	2 cut(s)	230, 262
Bpu1102I	GCTNAGC	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	71
BsaJI	CCNNGG	1 cut(s)	455
Bsc4I	CCNNNNNNNGG	1 cut(s)	134
BseBI	CCWGG	1 cut(s)	456
BseDI	CCNNGG	1 cut(s)	455
BseLI	CCNNNNNNNGG	1 cut(s)	134
BseMII	CTCAG	4 cut(s)	141, 228, 261, 332
BsgI	GTGCAG	1 cut(s)	249
BshFI	GGCC	1 cut(s)	126
BslFI	GGGAC	2 cut(s)	209, 428
BslI	CCNNNNNNNGG	1 cut(s)	134
BsmFI	GGGAC	2 cut(s)	209, 428
BsnI	GGCC	1 cut(s)	126
Bsp143I	GATC	2 cut(s)	267, 328
Bsp1720I	GCTNAGC	1 cut(s)	237
BspANI	GGCC	1 cut(s)	126
BspCNI	CTCAG	4 cut(s)	142, 229, 260, 333
BspHI	TCATGA	1 cut(s)	331
BspMI	ACCTGC	1 cut(s)	221
BspPI	GGATC	1 cut(s)	336
BssECI	CCNNGG	1 cut(s)	455
BssMI	GATC	2 cut(s)	267, 328
Bst2UI	CCWGG	1 cut(s)	456
Bst4CI	ACNGT	6 cut(s)	200, 265, 388, 394, 465, 552
BstC8I	GCNNGC	2 cut(s)	283, 377
BstDEI	CTNAG	5 cut(s)	133, 150, 237, 247, 341
BstKTI	GATC	2 cut(s)	270, 331
BstMBI	GATC	2 cut(s)	267, 328
BstMWI	GCNNNNNNNGC	1 cut(s)	282
BstNI	CCWGG	1 cut(s)	456
BstNSI	RCATGY	1 cut(s)	41
BstSCI	CCNGG	1 cut(s)	454
BsuI	GTATCC	1 cut(s)	453
BsuRI	GGCC	1 cut(s)	126
BtgZI	GCGATG	1 cut(s)	233
BtsI	GCAGTG	1 cut(s)	528
BtsIMutI	CAGTG	1 cut(s)	528
BveI	ACCTGC	1 cut(s)	221
Cac8I	GCNNGC	2 cut(s)	283, 377
CaiI	CAGNNNCTG	2 cut(s)	236, 485
CciI	TCATGA	1 cut(s)	331
Cfr13I	GGNCC	2 cut(s)	100, 125
CseI	GACGC	1 cut(s)	504
Csp6I	GTAC	1 cut(s)	143
CviAII	CATG	4 cut(s)	38, 104, 192, 332
CviJI	RGCY	6 cut(s)	47, 126, 140, 318, 440, 482
CviKI_1	RGCY	6 cut(s)	47, 126, 140, 318, 440, 482
CviQI	GTAC	1 cut(s)	143
DdeI	CTNAG	5 cut(s)	133, 150, 237, 247, 341
DpnI	GATC	2 cut(s)	269, 330
DpnII	GATC	2 cut(s)	267, 328
Eco47I	GGWCC	1 cut(s)	100
Eco57I	CTGAAG	2 cut(s)	47, 528
EcoRII	CCWGG	1 cut(s)	454
FaeI	CATG	4 cut(s)	41, 107, 195, 335
FaiI	YATR	8 cut(s)	26, 39, 105, 112, 193, 309, 333, 504
FaqI	GGGAC	2 cut(s)	209, 428
FatI	CATG	4 cut(s)	37, 103, 191, 331
HaeIII	GGCC	1 cut(s)	126
HgaI	GACGC	1 cut(s)	504
Hin1II	CATG	4 cut(s)	41, 107, 195, 335
HinfI	GANTC	2 cut(s)	21, 55
Hpy188I	TCNGA	2 cut(s)	151, 496
Hpy188III	TCNNGA	3 cut(s)	173, 332, 367
Hpy99I	CGWCG	1 cut(s)	520
HpyAV	CCTTC	2 cut(s)	91, 156
HpyCH4III	ACNGT	6 cut(s)	200, 265, 388, 394, 465, 552
HpyCH4V	TGCA	5 cut(s)	168, 230, 311, 488, 548
HpyF10VI	GCNNNNNNNGC	1 cut(s)	282
HpyF3I	CTNAG	5 cut(s)	133, 150, 237, 247, 341
Hsp92II	CATG	4 cut(s)	41, 107, 195, 335
Kzo9I	GATC	2 cut(s)	267, 328
LmnI	GCTCC	1 cut(s)	137
LpnPI	CCDG	8 cut(s)	2, 50, 216, 380, 441, 459, 468, 498
LweI	GCATC	2 cut(s)	402, 497
MaeIII	GTNAC	4 cut(s)	336, 388, 448, 475
MalI	GATC	2 cut(s)	269, 330
MboI	GATC	2 cut(s)	267, 328
MboII	GAAGA	2 cut(s)	50, 53
MmeI	TCCRAC	1 cut(s)	306
MnlI	CCTC	5 cut(s)	145, 196, 218, 336, 365
MseI	TTAA	2 cut(s)	117, 405
MslI	CAYNNNNRTG	1 cut(s)	380
MspR9I	CCNGG	1 cut(s)	456
MvaI	CCWGG	1 cut(s)	456
MwoI	GCNNNNNNNGC	1 cut(s)	282
NdeII	GATC	2 cut(s)	267, 328
NlaIII	CATG	4 cut(s)	41, 107, 195, 335
NmuCI	GTSAC	1 cut(s)	388
NspI	RCATGY	1 cut(s)	41
PagI	TCATGA	1 cut(s)	331
PaqCI	CACCTGC	1 cut(s)	221
PfeI	GAWTC	2 cut(s)	21, 55
PflFI	GACNNNGTC	1 cut(s)	394
Psp6I	CCWGG	1 cut(s)	454
PspGI	CCWGG	1 cut(s)	454
PspPI	GGNCC	2 cut(s)	100, 125
PstNI	CAGNNNCTG	2 cut(s)	236, 485
PsyI	GACNNNGTC	1 cut(s)	394
RsaI	GTAC	1 cut(s)	144
RsaNI	GTAC	1 cut(s)	143
RseI	CAYNNNNRTG	1 cut(s)	380
SaqAI	TTAA	2 cut(s)	117, 405
Sau3AI	GATC	2 cut(s)	267, 328
Sau96I	GGNCC	2 cut(s)	100, 125
ScrFI	CCNGG	1 cut(s)	456
SfaNI	GCATC	2 cut(s)	402, 497
SinI	GGWCC	1 cut(s)	100
SmiMI	CAYNNNNRTG	1 cut(s)	380
SmlI	CTYRAG	1 cut(s)	50
SmoI	CTYRAG	1 cut(s)	50
StyD4I	CCNGG	1 cut(s)	454
TaaI	ACNGT	6 cut(s)	200, 265, 388, 394, 465, 552
TaqI	TCGA	2 cut(s)	157, 270
TfiI	GAWTC	2 cut(s)	21, 55
Tru1I	TTAA	2 cut(s)	117, 405
Tru9I	TTAA	2 cut(s)	117, 405
TscAI	CASTG	1 cut(s)	528
TseFI	GTSAC	1 cut(s)	388
Tsp45I	GTSAC	1 cut(s)	388
TspDTI	ATGAA	1 cut(s)	450
TspRI	CASTG	1 cut(s)	528
Tth111I	GACNNNGTC	1 cut(s)	394
VpaK11BI	GGWCC	1 cut(s)	100
XceI	RCATGY	1 cut(s)	41

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.