Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005542.1

Orthogroup ID

OG0002479

Physical Location & Seq

Genomic Coordinates Reverse (-)

12370 .. 14560

Gene Structure 2191 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0005542.1_g000003.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 579 bp

atggattggaactcggctctccatttcagaatggtcctccttctcgaggaggatatcggggcaggagagttggggatccggtccaggactgtgaggttcgtggggggtgcgatgagaggtgcaggtgctgagcaactctcagttttagtaagaactgtgatcgcaagcaaagcaagcaagaatgtgcttcgcttattttatgcacttggctacaagttggatcatgagttactgagggtcgggtttgcgttccatttccagagaggcacgcagatgactgtgactgtgtcatcagttaataagatgccacaactacacaatacagatgaagctgtccctgtaactcccgggatacatttggttgaagttacagcccctgcattatctgaaacttatactgaagttgcgtcggcagtgtcatcattttgcgaatatcttgcacccctcctgcatttgtcaaaaccgggaatttcaactggggttgttcctactgctgctgccgctgctgcatctctcatgtctgatggcgatgagttagttcctggagaaggcatcccagagtttcaaggcctagaatga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000414 GO:0000428 GO:0001101 GO:0002831 GO:0003002 GO:0003006 GO:0003674 GO:0003712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006353 GO:0006355 GO:0006366 GO:0006369 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009966 GO:0009987 GO:0010033 GO:0010219 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0010646 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016591 GO:0016592 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0023051 GO:0030880 GO:0031047 GO:0031050 GO:0031056 GO:0031060 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031399 GO:0031554 GO:0031974 GO:0031981 GO:0032101 GO:0032268 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032991 GO:0033043 GO:0033044 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0040034 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043244 GO:0043254 GO:0043331 GO:0043900 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048442 GO:0048443 GO:0048464 GO:0048465 GO:0048466 GO:0048467 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051252 GO:0051253 GO:0051716 GO:0055029 GO:0060255 GO:0061458 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090567 GO:0090575 GO:0097305 GO:0097659 GO:0099402 GO:0140110 GO:1900150 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1902275 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000026 GO:2000028 GO:2000031 GO:2000112 GO:2000113 GO:2000142 GO:2000241 GO:2001023 GO:2001038 GO:2001141 GO:2001253

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

192

Amino Acids

20.51

Weight (kDa)

5.5

Isoelectric Point (pI)

32.86

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22370
fragaria_vesca	FvH4_5g37300 FvH4_5g37300 FvH4_5g37300
malus_domestica	MD15G1369800.v1.1
prunus_persica	Prupe.1G517500_v2.0.a1 Prupe.1G517500_v2.0.a1 Prupe.1G518900_v2.0.a1 Prupe.1G518900_v2.0.a1 Prupe.1G518900_v2.0.a1
pyrus_communis	pycom15g33090
rosa_chinensis	RchiOBHm_Chr5g0034471 RchiOBHm_Chr5g0038311 RchiOBHm_Chr7g0238871 RchiOBHm_Chr7g0238911
rosa_laevigata	RLG00000000798 RLG00000033846
rosa_multiflora	Rmu_sc0000764.1_g000001 Rmu_sc0004132.1_g000018 Rmu_sc0005542.1_g000003 Rmu_sc0007101.1_g000002
rosa_roxburghii	Rroxscaffold_1G00042690 Rroxscaffold_3G00221500
rosa_rugosa	Rorug05G0194800 Rorug05G0194800 Rorug05G0194800 Rorug05G0194900 Rorug07G0323900 Rorug07G0323900
rosa_samantha	Rh5AG238300 Rh5AG259300 Rh5BG263100 Rh5CG269100 Rh5CG317600 Rh5DG246600 Rh5DG272100 Rh7AG478400 Rh7BG450900
rosa_wichuraiana	Rw5G021760 Rw5G024270 Rw7G039940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	113
Acc36I	ACCTGC	1 cut(s)	113
AciI	CCGC	1 cut(s)	501
AclWI	GGATC	3 cut(s)	70, 83, 228
AcsI	RAATTY	1 cut(s)	468
AcuI	CTGAAG	1 cut(s)	420
AfiI	CCNNNNNNNGG	2 cut(s)	46, 548
AgsI	TTSAA	3 cut(s)	365, 474, 566
AjnI	CCWGG	2 cut(s)	83, 541
AluBI	AGCT	1 cut(s)	332
AluI	AGCT	1 cut(s)	332
AlwI	GGATC	3 cut(s)	70, 83, 228
AlwNI	CAGNNNCTG	2 cut(s)	128, 377
Ama87I	CYCGRG	2 cut(s)	44, 347
AoxI	GGCC	1 cut(s)	568
ApeKI	GCWGC	4 cut(s)	494, 497, 503, 506
ApoI	RAATTY	1 cut(s)	468
AspS9I	GGNCC	2 cut(s)	34, 81
AsuC2I	CCSGG	3 cut(s)	348, 349, 465
AvaI	CYCGRG	2 cut(s)	44, 347
AvaII	GGWCC	2 cut(s)	34, 81
BamHI	GGATCC	1 cut(s)	75
BbvI	GCAGC	4 cut(s)	481, 484, 490, 493
BccI	CCATC	1 cut(s)	518
BcgI	CGANNNNNNTGC	2 cut(s)	419, 453
BciT130I	CCWGG	2 cut(s)	85, 543
BciVI	GTATCC	1 cut(s)	345
BcnI	CCSGG	3 cut(s)	348, 349, 465
BfaI	CTAG	1 cut(s)	572
BfuAI	ACCTGC	1 cut(s)	113
BfuI	GTATCC	1 cut(s)	345
BisI	GCNGC	5 cut(s)	495, 498, 501, 504, 507
BlpI	GCTNAGC	1 cut(s)	129
BlsI	GCNGC	5 cut(s)	496, 499, 502, 505, 508
Bme1390I	CCNGG	5 cut(s)	85, 348, 349, 465, 543
Bme18I	GGWCC	2 cut(s)	34, 81
BmeT110I	CYCGRG	2 cut(s)	44, 347
BmgT120I	GGNCC	2 cut(s)	34, 81
BmiI	GGNNCC	1 cut(s)	77
BmrFI	CCNGG	5 cut(s)	85, 348, 349, 465, 543
BmrI	ACTGGG	1 cut(s)	486
BmsI	GCATC	3 cut(s)	294, 518, 561
BmuI	ACTGGG	1 cut(s)	486
BplI	GAGNNNNNCTC	2 cut(s)	122, 154
BpmI	CTGGAG	1 cut(s)	564
Bpu1102I	GCTNAGC	1 cut(s)	129
BpuMI	CCSGG	3 cut(s)	348, 349, 465
BsaJI	CCNNGG	1 cut(s)	347
BsaWI	WCCGGW	1 cut(s)	78
Bsc4I	CCNNNNNNNGG	2 cut(s)	46, 548
Bse1I	ACTGG	1 cut(s)	481
BseBI	CCWGG	2 cut(s)	85, 543
BseDI	CCNNGG	1 cut(s)	347
BseGI	GGATG	1 cut(s)	552
BseLI	CCNNNNNNNGG	2 cut(s)	46, 548
BseMII	CTCAG	3 cut(s)	120, 153, 224
BseNI	ACTGG	1 cut(s)	481
BseRI	GAGGAG	1 cut(s)	62
BseXI	GCAGC	4 cut(s)	481, 484, 490, 493
BsgI	GTGCAG	1 cut(s)	141
BshFI	GGCC	1 cut(s)	570
BsiHKCI	CYCGRG	2 cut(s)	44, 347
BsiSI	CCGG	3 cut(s)	79, 348, 464
BslFI	GGGAC	1 cut(s)	320
BslI	CCNNNNNNNGG	2 cut(s)	46, 548
BsmFI	GGGAC	1 cut(s)	320
BsnI	GGCC	1 cut(s)	570
BsoBI	CYCGRG	2 cut(s)	44, 347
Bsp143I	GATC	3 cut(s)	75, 159, 220
Bsp1720I	GCTNAGC	1 cut(s)	129
BspACI	CCGC	1 cut(s)	501
BspANI	GGCC	1 cut(s)	570
BspCNI	CTCAG	3 cut(s)	121, 152, 225
BspHI	TCATGA	1 cut(s)	223
BspLI	GGNNCC	1 cut(s)	77
BspMI	ACCTGC	1 cut(s)	113
BspPI	GGATC	3 cut(s)	70, 83, 228
BsrI	ACTGG	1 cut(s)	481
BssECI	CCNNGG	1 cut(s)	347
BssMI	GATC	3 cut(s)	75, 159, 220
Bst2UI	CCWGG	2 cut(s)	85, 543
Bst4CI	ACNGT	4 cut(s)	91, 157, 280, 286
BstC8I	GCNNGC	3 cut(s)	166, 175, 269
BstDEI	CTNAG	3 cut(s)	129, 139, 233
BstENI	CCTNNNNNAGG	2 cut(s)	44, 546
BstF5I	GGATG	1 cut(s)	552
BstKTI	GATC	3 cut(s)	78, 162, 223
BstMBI	GATC	3 cut(s)	75, 159, 220
BstMWI	GCNNNNNNNGC	5 cut(s)	170, 174, 500, 503, 506
BstNI	CCWGG	2 cut(s)	85, 543
BstSCI	CCNGG	5 cut(s)	83, 346, 347, 463, 541
BstV1I	GCAGC	4 cut(s)	481, 484, 490, 493
BstX2I	RGATCY	1 cut(s)	75
BstYI	RGATCY	1 cut(s)	75
BsuI	GTATCC	1 cut(s)	345
BsuRI	GGCC	1 cut(s)	570
BtgZI	GCGATG	2 cut(s)	125, 543
BtsCI	GGATG	1 cut(s)	552
BtsI	GCAGTG	1 cut(s)	420
BtsIMutI	CAGTG	1 cut(s)	420
BveI	ACCTGC	1 cut(s)	113
Cac8I	GCNNGC	3 cut(s)	166, 175, 269
CaiI	CAGNNNCTG	2 cut(s)	128, 377
CciI	TCATGA	1 cut(s)	223
Cfr13I	GGNCC	2 cut(s)	34, 81
Cfr9I	CCCGGG	1 cut(s)	347
CseI	GACGC	1 cut(s)	396
CviAII	CATG	2 cut(s)	224, 517
CviJI	RGCY	5 cut(s)	17, 210, 332, 374, 570
CviKI_1	RGCY	5 cut(s)	17, 210, 332, 374, 570
DdeI	CTNAG	3 cut(s)	129, 139, 233
DpnI	GATC	3 cut(s)	77, 161, 222
DpnII	GATC	3 cut(s)	75, 159, 220
Eco147I	AGGCCT	1 cut(s)	570
Eco32I	GATATC	1 cut(s)	55
Eco47I	GGWCC	2 cut(s)	34, 81
Eco57I	CTGAAG	1 cut(s)	420
Eco88I	CYCGRG	2 cut(s)	44, 347
EcoNI	CCTNNNNNAGG	2 cut(s)	44, 546
EcoRII	CCWGG	2 cut(s)	83, 541
EcoRV	GATATC	1 cut(s)	55
FaeI	CATG	2 cut(s)	227, 520
FaiI	YATR	4 cut(s)	201, 225, 396, 518
FaqI	GGGAC	1 cut(s)	320
FatI	CATG	2 cut(s)	223, 516
Fnu4HI	GCNGC	5 cut(s)	495, 498, 501, 504, 507
FokI	GGATG	1 cut(s)	539
Fsp4HI	GCNGC	5 cut(s)	495, 498, 501, 504, 507
FspBI	CTAG	1 cut(s)	572
GluI	GCNGC	5 cut(s)	495, 498, 501, 504, 507
GsuI	CTGGAG	1 cut(s)	564
HaeIII	GGCC	1 cut(s)	570
HapII	CCGG	3 cut(s)	79, 348, 464
HgaI	GACGC	1 cut(s)	396
Hin1II	CATG	2 cut(s)	227, 520
HpaII	CCGG	3 cut(s)	79, 348, 464
Hpy188I	TCNGA	3 cut(s)	29, 388, 523
Hpy188III	TCNNGA	3 cut(s)	44, 224, 259
Hpy99I	CGWCG	1 cut(s)	412
HpyAV	CCTTC	2 cut(s)	50, 542
HpyCH4III	ACNGT	4 cut(s)	91, 157, 280, 286
HpyCH4V	TGCA	6 cut(s)	122, 203, 380, 440, 451, 509
HpyF10VI	GCNNNNNNNGC	5 cut(s)	170, 174, 500, 503, 506
HpyF3I	CTNAG	3 cut(s)	129, 139, 233
Hsp92II	CATG	2 cut(s)	227, 520
Kzo9I	GATC	3 cut(s)	75, 159, 220
Lsp1109I	GCAGC	4 cut(s)	481, 484, 490, 493
LweI	GCATC	3 cut(s)	294, 518, 561
MaeI	CTAG	1 cut(s)	572
MaeIII	GTNAC	4 cut(s)	228, 280, 340, 367
MalI	GATC	3 cut(s)	77, 161, 222
MboI	GATC	3 cut(s)	75, 159, 220
MflI	RGATCY	1 cut(s)	75
MluCI	AATT	1 cut(s)	468
MmeI	TCCRAC	1 cut(s)	198
MnlI	CCTC	8 cut(s)	40, 43, 47, 87, 110, 228, 257, 455
MseI	TTAA	1 cut(s)	297
MslI	CAYNNNNRTG	1 cut(s)	272
MspA1I	CMGCKG	1 cut(s)	503
MspI	CCGG	3 cut(s)	79, 348, 464
MspR9I	CCNGG	5 cut(s)	85, 348, 349, 465, 543
MvaI	CCWGG	2 cut(s)	85, 543
MwoI	GCNNNNNNNGC	5 cut(s)	170, 174, 500, 503, 506
NciI	CCSGG	3 cut(s)	348, 349, 465
NdeII	GATC	3 cut(s)	75, 159, 220
NlaIII	CATG	2 cut(s)	227, 520
NlaIV	GGNNCC	1 cut(s)	77
NmuCI	GTSAC	1 cut(s)	280
PaeR7I	CTCGAG	1 cut(s)	44
PagI	TCATGA	1 cut(s)	223
PaqCI	CACCTGC	1 cut(s)	113
PceI	AGGCCT	1 cut(s)	570
PflFI	GACNNNGTC	1 cut(s)	286
PfoI	TCCNGGA	2 cut(s)	83, 541
PkrI	GCNGC	5 cut(s)	496, 499, 502, 505, 508
Psp6I	CCWGG	2 cut(s)	83, 541
PspGI	CCWGG	2 cut(s)	83, 541
PspN4I	GGNNCC	1 cut(s)	77
PspPI	GGNCC	2 cut(s)	34, 81
PstNI	CAGNNNCTG	2 cut(s)	128, 377
PsuI	RGATCY	1 cut(s)	75
PsyI	GACNNNGTC	1 cut(s)	286
RseI	CAYNNNNRTG	1 cut(s)	272
SaqAI	TTAA	1 cut(s)	297
SatI	GCNGC	5 cut(s)	495, 498, 501, 504, 507
Sau3AI	GATC	3 cut(s)	75, 159, 220
Sau96I	GGNCC	2 cut(s)	34, 81
ScrFI	CCNGG	5 cut(s)	85, 348, 349, 465, 543
SetI	ASST	4 cut(s)	98, 121, 127, 334
SfaNI	GCATC	3 cut(s)	294, 518, 561
Sfr274I	CTCGAG	1 cut(s)	44
SinI	GGWCC	2 cut(s)	34, 81
SlaI	CTCGAG	1 cut(s)	44
SmaI	CCCGGG	1 cut(s)	349
SmiMI	CAYNNNNRTG	1 cut(s)	272
SmlI	CTYRAG	1 cut(s)	44
SmoI	CTYRAG	1 cut(s)	44
Sse9I	AATT	1 cut(s)	468
SseBI	AGGCCT	1 cut(s)	570
SsiI	CCGC	1 cut(s)	501
SspMI	CTAG	1 cut(s)	572
StuI	AGGCCT	1 cut(s)	570
StyD4I	CCNGG	5 cut(s)	83, 346, 347, 463, 541
TaaI	ACNGT	4 cut(s)	91, 157, 280, 286
TaqI	TCGA	1 cut(s)	45
TasI	AATT	1 cut(s)	468
TauI	GCSGC	1 cut(s)	503
Tru1I	TTAA	1 cut(s)	297
Tru9I	TTAA	1 cut(s)	297
TscAI	CASTG	1 cut(s)	420
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	4 cut(s)	494, 497, 503, 506
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	1 cut(s)	342
TspMI	CCCGGG	1 cut(s)	347
TspRI	CASTG	1 cut(s)	420
Tth111I	GACNNNGTC	1 cut(s)	286
VpaK11BI	GGWCC	2 cut(s)	34, 81
XagI	CCTNNNNNAGG	2 cut(s)	44, 546
XapI	RAATTY	1 cut(s)	468
XhoI	CTCGAG	1 cut(s)	44
XmaI	CCCGGG	1 cut(s)	347
XspI	CTAG	1 cut(s)	572

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.