Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5A

Orthogroup ID

OG0002479

Physical Location & Seq

Genomic Coordinates Forward (+)

33833290 .. 33836365

Gene Structure 3076 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5AG259300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 702 bp

ATGCTCACTCTCGGGTTTGGTGAGGTTGATTATATCAGCAAAATTTGGATGGAGTGCGTGGTTCAGGGAATCATAGAAACACAGCATGTTGAAGCCCTTGAGATTCTTCTTCAGGGTCTTTGTGGTGTTCGCAGAGAACCTTTGAAGGTCCATGAGATATGCCTTAAAAGTGGCCCAAACTTAGGAGCTGTACCTTCTGAGGTTCGACTTATTTGCAATCTTGAACAAACTGAACCTACATGGACTGTGAGGTTCGTGGGGGGTGCGATGAGAGGTGCAGGTGCTGAGCAACTCTCAGTTTTAGTAAGAACTGTGATCGAAAGCAAAGCAAGCAAGAATGTGCTTCGCTTATTTTATGCACTTGGCTACAAGTTGGATCATGAGTTACTGAGGGTTGGGTTTGCGTTCCATTTCCAGAGAGGCACGCAGATGACTGTGACTGTGTCATCAGTTAATAAGATGCCACAACTACACAATACAGATGAAGCTGTCCCTGTAACTCCTGGGATACAGTTGGTTGAAGTTACAGCCCCTGCATCATCTGAAACTTATACTGAAGTTGCGTCGGCAGTGTCATCATTTTGCGAATATCTTGCACCCCTCCTGCATTTGTCAAAACCGGGAATTTCAACTGGGGTTGTTCCTACTGCTGCTGCCGCTGCTGCATCTCTCATGTCTGATGGTGGGGGTACTACCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000414 GO:0000428 GO:0001101 GO:0002831 GO:0003002 GO:0003006 GO:0003674 GO:0003712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006353 GO:0006355 GO:0006366 GO:0006369 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009966 GO:0009987 GO:0010033 GO:0010219 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0010646 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016591 GO:0016592 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0023051 GO:0030880 GO:0031047 GO:0031050 GO:0031056 GO:0031060 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031399 GO:0031554 GO:0031974 GO:0031981 GO:0032101 GO:0032268 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032991 GO:0033043 GO:0033044 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0040034 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043244 GO:0043254 GO:0043331 GO:0043900 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048442 GO:0048443 GO:0048464 GO:0048465 GO:0048466 GO:0048467 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051252 GO:0051253 GO:0051716 GO:0055029 GO:0060255 GO:0061458 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090567 GO:0090575 GO:0097305 GO:0097659 GO:0099402 GO:0140110 GO:1900150 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1902275 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000026 GO:2000028 GO:2000031 GO:2000112 GO:2000113 GO:2000142 GO:2000241 GO:2001023 GO:2001038 GO:2001141 GO:2001253

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

233

Amino Acids

25.0

Weight (kDa)

5.69

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22370
fragaria_vesca	FvH4_5g37300 FvH4_5g37300 FvH4_5g37300
malus_domestica	MD15G1369800.v1.1
prunus_persica	Prupe.1G517500_v2.0.a1 Prupe.1G517500_v2.0.a1 Prupe.1G518900_v2.0.a1 Prupe.1G518900_v2.0.a1 Prupe.1G518900_v2.0.a1
pyrus_communis	pycom15g33090
rosa_chinensis	RchiOBHm_Chr5g0034471 RchiOBHm_Chr5g0038311 RchiOBHm_Chr7g0238871 RchiOBHm_Chr7g0238911
rosa_laevigata	RLG00000000798 RLG00000033846
rosa_multiflora	Rmu_sc0000764.1_g000001 Rmu_sc0004132.1_g000018 Rmu_sc0005542.1_g000003 Rmu_sc0007101.1_g000002
rosa_roxburghii	Rroxscaffold_1G00042690 Rroxscaffold_3G00221500
rosa_rugosa	Rorug05G0194800 Rorug05G0194800 Rorug05G0194800 Rorug05G0194900 Rorug07G0323900 Rorug07G0323900
rosa_samantha	Rh5AG238300 Rh5AG259300 Rh5BG263100 Rh5CG269100 Rh5CG317600 Rh5DG246600 Rh5DG272100 Rh7AG478400 Rh7BG450900
rosa_wichuraiana	Rw5G021760 Rw5G024270 Rw7G039940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	269
Acc36I	ACCTGC	1 cut(s)	269
AciI	CCGC	1 cut(s)	657
AclWI	GGATC	1 cut(s)	384
AcsI	RAATTY	2 cut(s)	42, 624
AcuI	CTGAAG	2 cut(s)	95, 576
AfaI	GTAC	2 cut(s)	192, 691
AfiI	CCNNNNNNNGG	1 cut(s)	182
AgsI	TTSAA	5 cut(s)	92, 145, 224, 521, 630
AjnI	CCWGG	1 cut(s)	502
AluBI	AGCT	2 cut(s)	188, 488
AluI	AGCT	2 cut(s)	188, 488
AlwI	GGATC	1 cut(s)	384
AlwNI	CAGNNNCTG	2 cut(s)	284, 533
Ama87I	CYCGRG	1 cut(s)	11
AoxI	GGCC	1 cut(s)	172
ApeKI	GCWGC	4 cut(s)	650, 653, 659, 662
ApoI	RAATTY	2 cut(s)	42, 624
AspS9I	GGNCC	2 cut(s)	148, 173
AsuC2I	CCSGG	1 cut(s)	621
AsuHPI	GGTGA	1 cut(s)	32
AvaI	CYCGRG	1 cut(s)	11
AvaII	GGWCC	1 cut(s)	148
BbvI	GCAGC	4 cut(s)	637, 640, 646, 649
BccI	CCATC	2 cut(s)	43, 674
BcgI	CGANNNNNNTGC	4 cut(s)	195, 229, 575, 609
BciT130I	CCWGG	1 cut(s)	504
BciVI	GTATCC	1 cut(s)	501
BcnI	CCSGG	1 cut(s)	621
BfuAI	ACCTGC	1 cut(s)	269
BfuI	GTATCC	1 cut(s)	501
BisI	GCNGC	5 cut(s)	651, 654, 657, 660, 663
BlpI	GCTNAGC	1 cut(s)	285
BlsI	GCNGC	5 cut(s)	652, 655, 658, 661, 664
Bme1390I	CCNGG	2 cut(s)	504, 621
Bme18I	GGWCC	1 cut(s)	148
BmeT110I	CYCGRG	1 cut(s)	11
BmgT120I	GGNCC	2 cut(s)	148, 173
BmrFI	CCNGG	2 cut(s)	504, 621
BmrI	ACTGGG	1 cut(s)	642
BmsI	GCATC	3 cut(s)	450, 545, 674
BmuI	ACTGGG	1 cut(s)	642
BplI	GAGNNNNNCTC	2 cut(s)	278, 310
Bpu1102I	GCTNAGC	1 cut(s)	285
BpuEI	CTTGAG	1 cut(s)	119
BpuMI	CCSGG	1 cut(s)	621
BsaJI	CCNNGG	1 cut(s)	503
Bsc4I	CCNNNNNNNGG	1 cut(s)	182
Bse1I	ACTGG	1 cut(s)	637
BseBI	CCWGG	1 cut(s)	504
BseDI	CCNNGG	1 cut(s)	503
BseGI	GGATG	1 cut(s)	54
BseLI	CCNNNNNNNGG	1 cut(s)	182
BseMII	CTCAG	4 cut(s)	189, 276, 309, 380
BseNI	ACTGG	1 cut(s)	637
BseXI	GCAGC	4 cut(s)	637, 640, 646, 649
BsgI	GTGCAG	1 cut(s)	297
BshFI	GGCC	1 cut(s)	174
BsiHKCI	CYCGRG	1 cut(s)	11
BsiSI	CCGG	1 cut(s)	620
BslFI	GGGAC	1 cut(s)	476
BslI	CCNNNNNNNGG	1 cut(s)	182
BsmFI	GGGAC	1 cut(s)	476
BsnI	GGCC	1 cut(s)	174
BsoBI	CYCGRG	1 cut(s)	11
Bsp143I	GATC	2 cut(s)	315, 376
Bsp1720I	GCTNAGC	1 cut(s)	285
BspACI	CCGC	1 cut(s)	657
BspANI	GGCC	1 cut(s)	174
BspCNI	CTCAG	4 cut(s)	190, 277, 308, 381
BspHI	TCATGA	1 cut(s)	379
BspMI	ACCTGC	1 cut(s)	269
BspPI	GGATC	1 cut(s)	384
BsrI	ACTGG	1 cut(s)	637
BssECI	CCNNGG	1 cut(s)	503
BssMI	GATC	2 cut(s)	315, 376
Bst2UI	CCWGG	1 cut(s)	504
Bst4CI	ACNGT	5 cut(s)	247, 313, 436, 442, 513
BstC8I	GCNNGC	2 cut(s)	331, 425
BstDEI	CTNAG	5 cut(s)	181, 198, 285, 295, 389
BstF5I	GGATG	1 cut(s)	54
BstKTI	GATC	2 cut(s)	318, 379
BstMBI	GATC	2 cut(s)	315, 376
BstMWI	GCNNNNNNNGC	4 cut(s)	330, 656, 659, 662
BstNI	CCWGG	1 cut(s)	504
BstNSI	RCATGY	1 cut(s)	89
BstSCI	CCNGG	2 cut(s)	502, 619
BstV1I	GCAGC	4 cut(s)	637, 640, 646, 649
BsuI	GTATCC	1 cut(s)	501
BsuRI	GGCC	1 cut(s)	174
BtgZI	GCGATG	1 cut(s)	281
BtsCI	GGATG	1 cut(s)	54
BtsI	GCAGTG	1 cut(s)	576
BtsIMutI	CAGTG	1 cut(s)	576
BveI	ACCTGC	1 cut(s)	269
Cac8I	GCNNGC	2 cut(s)	331, 425
CaiI	CAGNNNCTG	2 cut(s)	284, 533
CciI	TCATGA	1 cut(s)	379
Cfr13I	GGNCC	2 cut(s)	148, 173
CseI	GACGC	1 cut(s)	552
Csp6I	GTAC	2 cut(s)	191, 690
CviAII	CATG	5 cut(s)	86, 152, 240, 380, 673
CviJI	RGCY	6 cut(s)	95, 174, 188, 366, 488, 530
CviKI_1	RGCY	6 cut(s)	95, 174, 188, 366, 488, 530
CviQI	GTAC	2 cut(s)	191, 690
DdeI	CTNAG	5 cut(s)	181, 198, 285, 295, 389
DpnI	GATC	2 cut(s)	317, 378
DpnII	GATC	2 cut(s)	315, 376
Eco47I	GGWCC	1 cut(s)	148
Eco57I	CTGAAG	2 cut(s)	95, 576
Eco88I	CYCGRG	1 cut(s)	11
EcoRII	CCWGG	1 cut(s)	502
FaeI	CATG	5 cut(s)	89, 155, 243, 383, 676
FaqI	GGGAC	1 cut(s)	476
FatI	CATG	5 cut(s)	85, 151, 239, 379, 672
Fnu4HI	GCNGC	5 cut(s)	651, 654, 657, 660, 663
FokI	GGATG	1 cut(s)	61
Fsp4HI	GCNGC	5 cut(s)	651, 654, 657, 660, 663
GluI	GCNGC	5 cut(s)	651, 654, 657, 660, 663
HaeIII	GGCC	1 cut(s)	174
HapII	CCGG	1 cut(s)	620
HgaI	GACGC	1 cut(s)	552
Hin1II	CATG	5 cut(s)	89, 155, 243, 383, 676
HinfI	GANTC	2 cut(s)	69, 103
HpaII	CCGG	1 cut(s)	620
HphI	GGTGA	1 cut(s)	32
Hpy188I	TCNGA	3 cut(s)	199, 544, 679
Hpy188III	TCNNGA	3 cut(s)	221, 380, 415
Hpy99I	CGWCG	1 cut(s)	568
HpyAV	CCTTC	2 cut(s)	139, 204
HpyCH4III	ACNGT	5 cut(s)	247, 313, 436, 442, 513
HpyCH4V	TGCA	7 cut(s)	216, 278, 359, 536, 596, 607, 665
HpyF10VI	GCNNNNNNNGC	4 cut(s)	330, 656, 659, 662
HpyF3I	CTNAG	5 cut(s)	181, 198, 285, 295, 389
Hsp92II	CATG	5 cut(s)	89, 155, 243, 383, 676
Kzo9I	GATC	2 cut(s)	315, 376
LmnI	GCTCC	1 cut(s)	185
Lsp1109I	GCAGC	4 cut(s)	637, 640, 646, 649
LweI	GCATC	3 cut(s)	450, 545, 674
MaeIII	GTNAC	4 cut(s)	384, 436, 496, 523
MalI	GATC	2 cut(s)	317, 378
MboI	GATC	2 cut(s)	315, 376
MboII	GAAGA	2 cut(s)	98, 101
MluCI	AATT	2 cut(s)	42, 624
MmeI	TCCRAC	1 cut(s)	354
MnlI	CCTC	7 cut(s)	16, 193, 243, 266, 384, 413, 611
MseI	TTAA	2 cut(s)	165, 453
MslI	CAYNNNNRTG	1 cut(s)	428
MspA1I	CMGCKG	1 cut(s)	659
MspI	CCGG	1 cut(s)	620
MspR9I	CCNGG	2 cut(s)	504, 621
MvaI	CCWGG	1 cut(s)	504
MwoI	GCNNNNNNNGC	4 cut(s)	330, 656, 659, 662
NciI	CCSGG	1 cut(s)	621
NdeII	GATC	2 cut(s)	315, 376
NlaIII	CATG	5 cut(s)	89, 155, 243, 383, 676
NmuCI	GTSAC	1 cut(s)	436
NspI	RCATGY	1 cut(s)	89
PagI	TCATGA	1 cut(s)	379
PaqCI	CACCTGC	1 cut(s)	269
PfeI	GAWTC	2 cut(s)	69, 103
PflFI	GACNNNGTC	1 cut(s)	442
PkrI	GCNGC	5 cut(s)	652, 655, 658, 661, 664
Psp6I	CCWGG	1 cut(s)	502
PspGI	CCWGG	1 cut(s)	502
PspPI	GGNCC	2 cut(s)	148, 173
PstNI	CAGNNNCTG	2 cut(s)	284, 533
PsyI	GACNNNGTC	1 cut(s)	442
RsaI	GTAC	2 cut(s)	192, 691
RsaNI	GTAC	2 cut(s)	191, 690
RseI	CAYNNNNRTG	1 cut(s)	428
SaqAI	TTAA	2 cut(s)	165, 453
SatI	GCNGC	5 cut(s)	651, 654, 657, 660, 663
Sau3AI	GATC	2 cut(s)	315, 376
Sau96I	GGNCC	2 cut(s)	148, 173
ScrFI	CCNGG	2 cut(s)	504, 621
SfaNI	GCATC	3 cut(s)	450, 545, 674
SinI	GGWCC	1 cut(s)	148
SmiMI	CAYNNNNRTG	1 cut(s)	428
SmlI	CTYRAG	1 cut(s)	98
SmoI	CTYRAG	1 cut(s)	98
Sse9I	AATT	2 cut(s)	42, 624
SsiI	CCGC	1 cut(s)	657
StyD4I	CCNGG	2 cut(s)	502, 619
TaaI	ACNGT	5 cut(s)	247, 313, 436, 442, 513
TaqI	TCGA	2 cut(s)	205, 318
TasI	AATT	2 cut(s)	42, 624
TauI	GCSGC	1 cut(s)	659
TfiI	GAWTC	2 cut(s)	69, 103
Tru1I	TTAA	2 cut(s)	165, 453
Tru9I	TTAA	2 cut(s)	165, 453
TscAI	CASTG	1 cut(s)	576
TseFI	GTSAC	1 cut(s)	436
TseI	GCWGC	4 cut(s)	650, 653, 659, 662
Tsp45I	GTSAC	1 cut(s)	436
TspDTI	ATGAA	1 cut(s)	498
TspRI	CASTG	1 cut(s)	576
Tth111I	GACNNNGTC	1 cut(s)	442
VpaK11BI	GGWCC	1 cut(s)	148
XapI	RAATTY	2 cut(s)	42, 624
XceI	RCATGY	1 cut(s)	89

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.