Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr7B

Orthogroup ID

OG0002479

Physical Location & Seq

Genomic Coordinates Forward (+)

52921471 .. 52924114

Gene Structure 2644 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh7BG450900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 558 bp

ATGAGAAAGATTGAATCTCTTGCTTGCCATTACTTTTCGCATGTTGAAGCCCTTGAGATTCTTCTTCAGGGTCTTTGTGGTGTTCGCAGAGAACCTTTGAAGGTCCATGAGATATGCCTTAAAAGTGGCCCAAACTTAGGAGCTGTACCTTCTGAGGTTCGACTTATTTGCAATCTTGAACAAACTGAACCTACATGGACTGTGAGGTTCGTGGGGGGTGCGATGAGAGGTGCAGGTGCTGAGCAACTCTCAGTTTTAGTAAGAACTGTGATCGAAAGCAAAGCAAGCAAGAATGTGCTTCGCTTATTTTATGCACTTGGCTACAAGTTGGATCATGAGTTACTGAGGGTCGGGTTTGCGTTCCATTTCCAGAGAGGCACGCAGATGACTGTGACTGTGTCATCAGTTAATAAGATGCCACAACTACACAATACAGATGAAGCTGTCCCTGTAACTCCCGGGATACAGTTGGTTGAAGTTACAGCCCCTGCATCATCTGAAACTTATACTGAAGTTGCGTCGGCAGTGTCATCATTTTGCGAATATCTTGCACCGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000414 GO:0000428 GO:0001101 GO:0002831 GO:0003002 GO:0003006 GO:0003674 GO:0003712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006353 GO:0006355 GO:0006366 GO:0006369 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009966 GO:0009987 GO:0010033 GO:0010219 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0010646 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016591 GO:0016592 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0023051 GO:0030880 GO:0031047 GO:0031050 GO:0031056 GO:0031060 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031399 GO:0031554 GO:0031974 GO:0031981 GO:0032101 GO:0032268 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032991 GO:0033043 GO:0033044 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0040034 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043244 GO:0043254 GO:0043331 GO:0043900 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048442 GO:0048443 GO:0048464 GO:0048465 GO:0048466 GO:0048467 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051252 GO:0051253 GO:0051716 GO:0055029 GO:0060255 GO:0061458 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090567 GO:0090575 GO:0097305 GO:0097659 GO:0099402 GO:0140110 GO:1900150 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1902275 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000026 GO:2000028 GO:2000031 GO:2000112 GO:2000113 GO:2000142 GO:2000241 GO:2001023 GO:2001038 GO:2001141 GO:2001253

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

185

Amino Acids

20.33

Weight (kDa)

6.59

Isoelectric Point (pI)

51.38

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Publication-ready

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Orthologous Genes (Group: OG0002479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22370
fragaria_vesca	FvH4_5g37300 FvH4_5g37300 FvH4_5g37300
malus_domestica	MD15G1369800.v1.1
prunus_persica	Prupe.1G517500_v2.0.a1 Prupe.1G517500_v2.0.a1 Prupe.1G518900_v2.0.a1 Prupe.1G518900_v2.0.a1 Prupe.1G518900_v2.0.a1
pyrus_communis	pycom15g33090
rosa_chinensis	RchiOBHm_Chr5g0034471 RchiOBHm_Chr5g0038311 RchiOBHm_Chr7g0238871 RchiOBHm_Chr7g0238911
rosa_laevigata	RLG00000000798 RLG00000033846
rosa_multiflora	Rmu_sc0000764.1_g000001 Rmu_sc0004132.1_g000018 Rmu_sc0005542.1_g000003 Rmu_sc0007101.1_g000002
rosa_roxburghii	Rroxscaffold_1G00042690 Rroxscaffold_3G00221500
rosa_rugosa	Rorug05G0194800 Rorug05G0194800 Rorug05G0194800 Rorug05G0194900 Rorug07G0323900 Rorug07G0323900
rosa_samantha	Rh5AG238300 Rh5AG259300 Rh5BG263100 Rh5CG269100 Rh5CG317600 Rh5DG246600 Rh5DG272100 Rh7AG478400 Rh7BG450900
rosa_wichuraiana	Rw5G021760 Rw5G024270 Rw7G039940

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	224
Acc36I	ACCTGC	1 cut(s)	224
AclWI	GGATC	1 cut(s)	339
AcuI	CTGAAG	2 cut(s)	50, 531
AfaI	GTAC	1 cut(s)	147
AfiI	CCNNNNNNNGG	1 cut(s)	137
AgsI	TTSAA	5 cut(s)	14, 47, 100, 179, 476
AluBI	AGCT	2 cut(s)	143, 443
AluI	AGCT	2 cut(s)	143, 443
AlwI	GGATC	1 cut(s)	339
AlwNI	CAGNNNCTG	2 cut(s)	239, 488
Ama87I	CYCGRG	1 cut(s)	458
AoxI	GGCC	1 cut(s)	127
AspS9I	GGNCC	2 cut(s)	103, 128
AsuC2I	CCSGG	2 cut(s)	459, 460
AvaI	CYCGRG	1 cut(s)	458
AvaII	GGWCC	1 cut(s)	103
BcgI	CGANNNNNNTGC	3 cut(s)	150, 184, 530
BciVI	GTATCC	1 cut(s)	456
BcnI	CCSGG	2 cut(s)	459, 460
BfuAI	ACCTGC	1 cut(s)	224
BfuI	GTATCC	1 cut(s)	456
BlpI	GCTNAGC	1 cut(s)	240
Bme1390I	CCNGG	2 cut(s)	459, 460
Bme18I	GGWCC	1 cut(s)	103
BmeT110I	CYCGRG	1 cut(s)	458
BmgT120I	GGNCC	2 cut(s)	103, 128
BmrFI	CCNGG	2 cut(s)	459, 460
BmsI	GCATC	2 cut(s)	405, 500
BplI	GAGNNNNNCTC	2 cut(s)	233, 265
Bpu1102I	GCTNAGC	1 cut(s)	240
BpuEI	CTTGAG	1 cut(s)	74
BpuMI	CCSGG	2 cut(s)	459, 460
BsaJI	CCNNGG	1 cut(s)	458
Bsc4I	CCNNNNNNNGG	1 cut(s)	137
BseDI	CCNNGG	1 cut(s)	458
BseLI	CCNNNNNNNGG	1 cut(s)	137
BseMII	CTCAG	4 cut(s)	144, 231, 264, 335
BsgI	GTGCAG	1 cut(s)	252
BshFI	GGCC	1 cut(s)	129
BsiHKCI	CYCGRG	1 cut(s)	458
BsiSI	CCGG	1 cut(s)	459
BslFI	GGGAC	1 cut(s)	431
BslI	CCNNNNNNNGG	1 cut(s)	137
BsmFI	GGGAC	1 cut(s)	431
BsnI	GGCC	1 cut(s)	129
BsoBI	CYCGRG	1 cut(s)	458
Bsp143I	GATC	2 cut(s)	270, 331
Bsp1720I	GCTNAGC	1 cut(s)	240
BspANI	GGCC	1 cut(s)	129
BspCNI	CTCAG	4 cut(s)	145, 232, 263, 336
BspHI	TCATGA	1 cut(s)	334
BspMI	ACCTGC	1 cut(s)	224
BspPI	GGATC	1 cut(s)	339
BssECI	CCNNGG	1 cut(s)	458
BssMI	GATC	2 cut(s)	270, 331
Bst4CI	ACNGT	6 cut(s)	202, 268, 391, 397, 468, 555
BstC8I	GCNNGC	3 cut(s)	25, 286, 380
BstDEI	CTNAG	5 cut(s)	136, 153, 240, 250, 344
BstKTI	GATC	2 cut(s)	273, 334
BstMBI	GATC	2 cut(s)	270, 331
BstMWI	GCNNNNNNNGC	1 cut(s)	285
BstNSI	RCATGY	1 cut(s)	44
BstSCI	CCNGG	2 cut(s)	457, 458
BsuI	GTATCC	1 cut(s)	456
BsuRI	GGCC	1 cut(s)	129
BtgZI	GCGATG	1 cut(s)	236
BtsI	GCAGTG	1 cut(s)	531
BtsIMutI	CAGTG	1 cut(s)	531
BveI	ACCTGC	1 cut(s)	224
Cac8I	GCNNGC	3 cut(s)	25, 286, 380
CaiI	CAGNNNCTG	2 cut(s)	239, 488
CciI	TCATGA	1 cut(s)	334
Cfr13I	GGNCC	2 cut(s)	103, 128
Cfr9I	CCCGGG	1 cut(s)	458
CseI	GACGC	1 cut(s)	507
Csp6I	GTAC	1 cut(s)	146
CviAII	CATG	4 cut(s)	41, 107, 195, 335
CviJI	RGCY	6 cut(s)	50, 129, 143, 321, 443, 485
CviKI_1	RGCY	6 cut(s)	50, 129, 143, 321, 443, 485
CviQI	GTAC	1 cut(s)	146
DdeI	CTNAG	5 cut(s)	136, 153, 240, 250, 344
DpnI	GATC	2 cut(s)	272, 333
DpnII	GATC	2 cut(s)	270, 331
Eco47I	GGWCC	1 cut(s)	103
Eco57I	CTGAAG	2 cut(s)	50, 531
Eco88I	CYCGRG	1 cut(s)	458
FaeI	CATG	4 cut(s)	44, 110, 198, 338
FaiI	YATR	7 cut(s)	42, 108, 115, 196, 312, 336, 507
FaqI	GGGAC	1 cut(s)	431
FatI	CATG	4 cut(s)	40, 106, 194, 334
HaeIII	GGCC	1 cut(s)	129
HapII	CCGG	1 cut(s)	459
HgaI	GACGC	1 cut(s)	507
Hin1II	CATG	4 cut(s)	44, 110, 198, 338
HinfI	GANTC	2 cut(s)	14, 58
HpaII	CCGG	1 cut(s)	459
Hpy188I	TCNGA	2 cut(s)	154, 499
Hpy188III	TCNNGA	3 cut(s)	176, 335, 370
Hpy99I	CGWCG	1 cut(s)	523
HpyAV	CCTTC	2 cut(s)	94, 159
HpyCH4III	ACNGT	6 cut(s)	202, 268, 391, 397, 468, 555
HpyCH4V	TGCA	5 cut(s)	171, 233, 314, 491, 551
HpyF10VI	GCNNNNNNNGC	1 cut(s)	285
HpyF3I	CTNAG	5 cut(s)	136, 153, 240, 250, 344
Hsp92II	CATG	4 cut(s)	44, 110, 198, 338
Kzo9I	GATC	2 cut(s)	270, 331
LmnI	GCTCC	1 cut(s)	140
LpnPI	CCDG	6 cut(s)	53, 219, 383, 462, 472, 501
LweI	GCATC	2 cut(s)	405, 500
MaeIII	GTNAC	4 cut(s)	339, 391, 451, 478
MalI	GATC	2 cut(s)	272, 333
MboI	GATC	2 cut(s)	270, 331
MboII	GAAGA	2 cut(s)	53, 56
MmeI	TCCRAC	1 cut(s)	309
MnlI	CCTC	5 cut(s)	148, 198, 221, 339, 368
MseI	TTAA	2 cut(s)	120, 408
MslI	CAYNNNNRTG	1 cut(s)	383
MspI	CCGG	1 cut(s)	459
MspR9I	CCNGG	2 cut(s)	459, 460
MwoI	GCNNNNNNNGC	1 cut(s)	285
NciI	CCSGG	2 cut(s)	459, 460
NdeII	GATC	2 cut(s)	270, 331
NlaIII	CATG	4 cut(s)	44, 110, 198, 338
NmuCI	GTSAC	1 cut(s)	391
NspI	RCATGY	1 cut(s)	44
PagI	TCATGA	1 cut(s)	334
PaqCI	CACCTGC	1 cut(s)	224
PfeI	GAWTC	2 cut(s)	14, 58
PflFI	GACNNNGTC	1 cut(s)	397
PspPI	GGNCC	2 cut(s)	103, 128
PstNI	CAGNNNCTG	2 cut(s)	239, 488
PsyI	GACNNNGTC	1 cut(s)	397
RsaI	GTAC	1 cut(s)	147
RsaNI	GTAC	1 cut(s)	146
RseI	CAYNNNNRTG	1 cut(s)	383
SaqAI	TTAA	2 cut(s)	120, 408
Sau3AI	GATC	2 cut(s)	270, 331
Sau96I	GGNCC	2 cut(s)	103, 128
ScrFI	CCNGG	2 cut(s)	459, 460
SfaNI	GCATC	2 cut(s)	405, 500
SinI	GGWCC	1 cut(s)	103
SmaI	CCCGGG	1 cut(s)	460
SmiMI	CAYNNNNRTG	1 cut(s)	383
SmlI	CTYRAG	1 cut(s)	53
SmoI	CTYRAG	1 cut(s)	53
StyD4I	CCNGG	2 cut(s)	457, 458
TaaI	ACNGT	6 cut(s)	202, 268, 391, 397, 468, 555
TaqI	TCGA	2 cut(s)	160, 273
TfiI	GAWTC	2 cut(s)	14, 58
Tru1I	TTAA	2 cut(s)	120, 408
Tru9I	TTAA	2 cut(s)	120, 408
TscAI	CASTG	1 cut(s)	531
TseFI	GTSAC	1 cut(s)	391
Tsp45I	GTSAC	1 cut(s)	391
TspDTI	ATGAA	1 cut(s)	453
TspMI	CCCGGG	1 cut(s)	458
TspRI	CASTG	1 cut(s)	531
Tth111I	GACNNNGTC	1 cut(s)	397
VpaK11BI	GGWCC	1 cut(s)	103
XceI	RCATGY	1 cut(s)	44
XmaI	CCCGGG	1 cut(s)	458

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.