Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000003

Orthogroup ID

OG0002479

Physical Location & Seq

Genomic Coordinates Reverse (-)

4269478 .. 4272297

Gene Structure 2820 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_3G00221500.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 651 bp

ATGGAGTGCGTGGTTCAGGGAATCATAGAAACACAGATGAGAAAGATTGAATCTCTTGCTTGCCATTACTTTTCGCATGTTGAAGCCCTTGAGATTCTTCTTCAGGGTCTTTGTGGTGTTCGCAGAGAACCTTTGAAAGTCCATGAGATATGCCTTAAAAGTGGCCCAAACTTAGGGGCTGTACCTTCTGAGGACTGTGAGGTTTGTGGGGGTGCGATGAGAGGTGCAGGTGCTGAGCAACTCTCAGTTTTAGTAAGAACTGTGATCGAAAGCAAAGCAAGCAAGAATGTGCTTCGCTTATTTTATGCACTTGGCTACAAGTTGGATCATGAGTTACTGAGAGTCAGGTTTGCGTTCCATTTCCAGAGAGGCACGCAGATGACTGTGACTGTGTCATCAGTTAATAAGATGCCACAACTGCACAATACAGATGAAGCTGTCCCTGTAACTCCCGGGATACAGTTGGTTGAAGTTACTGCCCCTGCATCATCTGAAACTTATACTGAAGTTGCGTCGGCAGTGTCATCATTTTGCGAATATCTTGCACCGCTCTTGCATTTGTCAAAACCGGGAATTTCAACTGGGGTTGTTCCTACTGCCGCTGCCGTTGCCGCATCTCTCATGTCTGATGGTGGGGGTACTACCTTATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000414 GO:0000428 GO:0001101 GO:0002831 GO:0003002 GO:0003006 GO:0003674 GO:0003712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006353 GO:0006355 GO:0006366 GO:0006369 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009966 GO:0009987 GO:0010033 GO:0010219 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0010646 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016591 GO:0016592 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0023051 GO:0030880 GO:0031047 GO:0031050 GO:0031056 GO:0031060 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031399 GO:0031554 GO:0031974 GO:0031981 GO:0032101 GO:0032268 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032991 GO:0033043 GO:0033044 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0040034 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043244 GO:0043254 GO:0043331 GO:0043900 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048442 GO:0048443 GO:0048464 GO:0048465 GO:0048466 GO:0048467 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051252 GO:0051253 GO:0051716 GO:0055029 GO:0060255 GO:0061458 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090567 GO:0090575 GO:0097305 GO:0097659 GO:0099402 GO:0140110 GO:1900150 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1902275 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000026 GO:2000028 GO:2000031 GO:2000112 GO:2000113 GO:2000142 GO:2000241 GO:2001023 GO:2001038 GO:2001141 GO:2001253

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

216

Amino Acids

23.1

Weight (kDa)

5.97

Isoelectric Point (pI)

51.35

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22370
fragaria_vesca	FvH4_5g37300 FvH4_5g37300 FvH4_5g37300
malus_domestica	MD15G1369800.v1.1
prunus_persica	Prupe.1G517500_v2.0.a1 Prupe.1G517500_v2.0.a1 Prupe.1G518900_v2.0.a1 Prupe.1G518900_v2.0.a1 Prupe.1G518900_v2.0.a1
pyrus_communis	pycom15g33090
rosa_chinensis	RchiOBHm_Chr5g0034471 RchiOBHm_Chr5g0038311 RchiOBHm_Chr7g0238871 RchiOBHm_Chr7g0238911
rosa_laevigata	RLG00000000798 RLG00000033846
rosa_multiflora	Rmu_sc0000764.1_g000001 Rmu_sc0004132.1_g000018 Rmu_sc0005542.1_g000003 Rmu_sc0007101.1_g000002
rosa_roxburghii	Rroxscaffold_1G00042690 Rroxscaffold_3G00221500
rosa_rugosa	Rorug05G0194800 Rorug05G0194800 Rorug05G0194800 Rorug05G0194900 Rorug07G0323900 Rorug07G0323900
rosa_samantha	Rh5AG238300 Rh5AG259300 Rh5BG263100 Rh5CG269100 Rh5CG317600 Rh5DG246600 Rh5DG272100 Rh7AG478400 Rh7BG450900
rosa_wichuraiana	Rw5G021760 Rw5G024270 Rw7G039940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	218
Acc36I	ACCTGC	1 cut(s)	218
AccBSI	CCGCTC	1 cut(s)	550
AciI	CCGC	3 cut(s)	548, 600, 612
AclWI	GGATC	1 cut(s)	333
AcsI	RAATTY	1 cut(s)	573
AcuI	CTGAAG	2 cut(s)	86, 525
AfaI	GTAC	2 cut(s)	183, 640
AfiI	CCNNNNNNNGG	1 cut(s)	173
AgsI	TTSAA	5 cut(s)	50, 83, 136, 470, 579
AluBI	AGCT	1 cut(s)	437
AluI	AGCT	1 cut(s)	437
AlwI	GGATC	1 cut(s)	333
AlwNI	CAGNNNCTG	1 cut(s)	233
Ama87I	CYCGRG	1 cut(s)	452
AoxI	GGCC	1 cut(s)	163
ApeKI	GCWGC	1 cut(s)	602
ApoI	RAATTY	1 cut(s)	573
AspS9I	GGNCC	1 cut(s)	164
AsuC2I	CCSGG	3 cut(s)	453, 454, 570
AvaI	CYCGRG	1 cut(s)	452
BbvI	GCAGC	1 cut(s)	589
BccI	CCATC	1 cut(s)	623
BceAI	ACGGC	1 cut(s)	590
BcgI	CGANNNNNNTGC	2 cut(s)	524, 558
BciVI	GTATCC	1 cut(s)	450
BcnI	CCSGG	3 cut(s)	453, 454, 570
BfuAI	ACCTGC	1 cut(s)	218
BfuI	GTATCC	1 cut(s)	450
BisI	GCNGC	3 cut(s)	600, 603, 612
BlpI	GCTNAGC	1 cut(s)	234
BlsI	GCNGC	3 cut(s)	601, 604, 613
Bme1390I	CCNGG	3 cut(s)	453, 454, 570
BmeT110I	CYCGRG	1 cut(s)	452
BmgT120I	GGNCC	1 cut(s)	164
BmrFI	CCNGG	3 cut(s)	453, 454, 570
BmrI	ACTGGG	1 cut(s)	591
BmsI	GCATC	3 cut(s)	399, 494, 623
BmuI	ACTGGG	1 cut(s)	591
BplI	GAGNNNNNCTC	2 cut(s)	227, 259
Bpu1102I	GCTNAGC	1 cut(s)	234
BpuEI	CTTGAG	1 cut(s)	110
BpuMI	CCSGG	3 cut(s)	453, 454, 570
BsaJI	CCNNGG	1 cut(s)	452
Bsc4I	CCNNNNNNNGG	1 cut(s)	173
Bse1I	ACTGG	1 cut(s)	586
BseDI	CCNNGG	1 cut(s)	452
BseLI	CCNNNNNNNGG	1 cut(s)	173
BseMII	CTCAG	4 cut(s)	180, 225, 258, 329
BseNI	ACTGG	1 cut(s)	586
BseXI	GCAGC	1 cut(s)	589
BsgI	GTGCAG	2 cut(s)	246, 404
BshFI	GGCC	1 cut(s)	165
BsiHKCI	CYCGRG	1 cut(s)	452
BsiSI	CCGG	2 cut(s)	453, 569
BslFI	GGGAC	1 cut(s)	425
BslI	CCNNNNNNNGG	1 cut(s)	173
BsmFI	GGGAC	1 cut(s)	425
BsnI	GGCC	1 cut(s)	165
BsoBI	CYCGRG	1 cut(s)	452
Bsp143I	GATC	2 cut(s)	264, 325
Bsp1720I	GCTNAGC	1 cut(s)	234
BspACI	CCGC	3 cut(s)	548, 600, 612
BspANI	GGCC	1 cut(s)	165
BspCNI	CTCAG	4 cut(s)	181, 226, 257, 330
BspHI	TCATGA	1 cut(s)	328
BspMI	ACCTGC	1 cut(s)	218
BspPI	GGATC	1 cut(s)	333
BsrBI	CCGCTC	1 cut(s)	550
BsrI	ACTGG	1 cut(s)	586
BssECI	CCNNGG	1 cut(s)	452
BssMI	GATC	2 cut(s)	264, 325
Bst4CI	ACNGT	5 cut(s)	197, 262, 385, 391, 462
BstC8I	GCNNGC	3 cut(s)	61, 280, 374
BstDEI	CTNAG	5 cut(s)	172, 189, 234, 244, 338
BstKTI	GATC	2 cut(s)	267, 328
BstMBI	GATC	2 cut(s)	264, 325
BstMWI	GCNNNNNNNGC	4 cut(s)	279, 418, 608, 611
BstNSI	RCATGY	1 cut(s)	80
BstSCI	CCNGG	3 cut(s)	451, 452, 568
BstV1I	GCAGC	1 cut(s)	589
BsuI	GTATCC	1 cut(s)	450
BsuRI	GGCC	1 cut(s)	165
BtgZI	GCGATG	1 cut(s)	230
BtsI	GCAGTG	1 cut(s)	525
BtsIMutI	CAGTG	1 cut(s)	525
BveI	ACCTGC	1 cut(s)	218
Cac8I	GCNNGC	3 cut(s)	61, 280, 374
CaiI	CAGNNNCTG	1 cut(s)	233
CciI	TCATGA	1 cut(s)	328
Cfr13I	GGNCC	1 cut(s)	164
Cfr9I	CCCGGG	1 cut(s)	452
CseI	GACGC	1 cut(s)	501
Csp6I	GTAC	2 cut(s)	182, 639
CviAII	CATG	4 cut(s)	77, 143, 329, 622
CviJI	RGCY	5 cut(s)	86, 165, 179, 315, 437
CviKI_1	RGCY	5 cut(s)	86, 165, 179, 315, 437
CviQI	GTAC	2 cut(s)	182, 639
DdeI	CTNAG	5 cut(s)	172, 189, 234, 244, 338
DpnI	GATC	2 cut(s)	266, 327
DpnII	GATC	2 cut(s)	264, 325
Eco57I	CTGAAG	2 cut(s)	86, 525
Eco88I	CYCGRG	1 cut(s)	452
FaeI	CATG	4 cut(s)	80, 146, 332, 625
FaiI	YATR	9 cut(s)	26, 78, 144, 151, 306, 330, 501, 623, 649
FaqI	GGGAC	1 cut(s)	425
FatI	CATG	4 cut(s)	76, 142, 328, 621
Fnu4HI	GCNGC	3 cut(s)	600, 603, 612
Fsp4HI	GCNGC	3 cut(s)	600, 603, 612
GluI	GCNGC	3 cut(s)	600, 603, 612
HaeIII	GGCC	1 cut(s)	165
HapII	CCGG	2 cut(s)	453, 569
HgaI	GACGC	1 cut(s)	501
Hin1II	CATG	4 cut(s)	80, 146, 332, 625
HinfI	GANTC	4 cut(s)	21, 50, 94, 342
HpaII	CCGG	2 cut(s)	453, 569
Hpy188I	TCNGA	3 cut(s)	190, 493, 628
Hpy188III	TCNNGA	2 cut(s)	329, 364
Hpy99I	CGWCG	1 cut(s)	517
HpyAV	CCTTC	1 cut(s)	195
HpyCH4III	ACNGT	5 cut(s)	197, 262, 385, 391, 462
HpyCH4V	TGCA	6 cut(s)	227, 308, 421, 485, 545, 556
HpyF10VI	GCNNNNNNNGC	4 cut(s)	279, 418, 608, 611
HpyF3I	CTNAG	5 cut(s)	172, 189, 234, 244, 338
Hsp92II	CATG	4 cut(s)	80, 146, 332, 625
Kzo9I	GATC	2 cut(s)	264, 325
Lsp1109I	GCAGC	1 cut(s)	589
LweI	GCATC	3 cut(s)	399, 494, 623
MaeIII	GTNAC	4 cut(s)	333, 385, 445, 472
MalI	GATC	2 cut(s)	266, 327
MbiI	CCGCTC	1 cut(s)	550
MboI	GATC	2 cut(s)	264, 325
MboII	GAAGA	2 cut(s)	89, 92
MluCI	AATT	1 cut(s)	573
MlyI	GAGTC	1 cut(s)	351
MmeI	TCCRAC	1 cut(s)	303
MnlI	CCTC	4 cut(s)	184, 193, 215, 362
MseI	TTAA	2 cut(s)	156, 402
MslI	CAYNNNNRTG	1 cut(s)	377
MspA1I	CMGCKG	1 cut(s)	602
MspI	CCGG	2 cut(s)	453, 569
MspR9I	CCNGG	3 cut(s)	453, 454, 570
MwoI	GCNNNNNNNGC	4 cut(s)	279, 418, 608, 611
NciI	CCSGG	3 cut(s)	453, 454, 570
NdeII	GATC	2 cut(s)	264, 325
NlaIII	CATG	4 cut(s)	80, 146, 332, 625
NmuCI	GTSAC	1 cut(s)	385
NspI	RCATGY	1 cut(s)	80
PagI	TCATGA	1 cut(s)	328
PaqCI	CACCTGC	1 cut(s)	218
PfeI	GAWTC	3 cut(s)	21, 50, 94
PflFI	GACNNNGTC	1 cut(s)	391
PkrI	GCNGC	3 cut(s)	601, 604, 613
PleI	GAGTC	1 cut(s)	350
PpsI	GAGTC	1 cut(s)	350
PspPI	GGNCC	1 cut(s)	164
PstNI	CAGNNNCTG	1 cut(s)	233
PsyI	GACNNNGTC	1 cut(s)	391
RsaI	GTAC	2 cut(s)	183, 640
RsaNI	GTAC	2 cut(s)	182, 639
RseI	CAYNNNNRTG	1 cut(s)	377
SaqAI	TTAA	2 cut(s)	156, 402
SatI	GCNGC	3 cut(s)	600, 603, 612
Sau3AI	GATC	2 cut(s)	264, 325
Sau96I	GGNCC	1 cut(s)	164
SchI	GAGTC	1 cut(s)	351
ScrFI	CCNGG	3 cut(s)	453, 454, 570
SetI	ASST	8 cut(s)	133, 187, 204, 226, 232, 350, 439, 647
SfaNI	GCATC	3 cut(s)	399, 494, 623
SmaI	CCCGGG	1 cut(s)	454
SmiMI	CAYNNNNRTG	1 cut(s)	377
SmlI	CTYRAG	1 cut(s)	89
SmoI	CTYRAG	1 cut(s)	89
Sse9I	AATT	1 cut(s)	573
SsiI	CCGC	3 cut(s)	548, 600, 612
StyD4I	CCNGG	3 cut(s)	451, 452, 568
TaaI	ACNGT	5 cut(s)	197, 262, 385, 391, 462
TaqI	TCGA	1 cut(s)	267
TasI	AATT	1 cut(s)	573
TauI	GCSGC	2 cut(s)	602, 614
TfiI	GAWTC	3 cut(s)	21, 50, 94
Tru1I	TTAA	2 cut(s)	156, 402
Tru9I	TTAA	2 cut(s)	156, 402
TscAI	CASTG	1 cut(s)	525
TseFI	GTSAC	1 cut(s)	385
TseI	GCWGC	1 cut(s)	602
Tsp45I	GTSAC	1 cut(s)	385
TspDTI	ATGAA	1 cut(s)	447
TspMI	CCCGGG	1 cut(s)	452
TspRI	CASTG	1 cut(s)	525
Tth111I	GACNNNGTC	1 cut(s)	391
XapI	RAATTY	1 cut(s)	573
XceI	RCATGY	1 cut(s)	80
XmaI	CCCGGG	1 cut(s)	452

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.