Rw5G024270

mediator of RNA polymerase II transcription subunit

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr5
OG0002479
Physical Location & Seq
Forward (+)
34490482 .. 34492356
1875 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw5G024270.1

Sequence Viewer

Length: 693 bp
ATGGAGTGCGTGGTTCAGGGAATCATAGAAACACAGCATGTTGAAGCCCTTGAGATTCTTCTTCAGGGTCTTTGTGGTGTTCGCAGAGAACCTTTGAAGGTCCATGAGTGGCCCAAACTTAGGTACAGATTGTTTTCTCATACACTATTGATCTGTGTAGTGATTAGGCAAATCAGAGCTGTACCTTCTGAGGTTCGACTTATTTGCAATCTTGAACAAACTGAACCTACATGGACTGTGAGGTTCGTGGGGGGTGCGATGAGAGGTGCAGGTGCTGAGCAACTCTCAGTTTTAGTAAGAACTGTGATCGAAAGCAAAGCAAGCAAGAATGTGCTTCGCTTATTTTATGCACTTGGCTACAAGTTGGATCATGAGTTACTGAGGGTTGGGTTTGCGTTCCATTTCCAGAGAGGCACGCAGATGACTGTGACTGTGTCATCAGTTAATAAGATGCCACAACTACACAATACAGATGAAGCTGTCCCTGTAACTCCCGGGATACAGTTGGTTGAAGTTACAGCCCCTGCATCATCTGAAACTTATACTGAAGTTGCGTCGGCAGTGTCATCATTTTGCGAATATCTTGCACCCCTCCTGCATTTGTCAAAACCGGGAATTTCAACTGGGGTTGTTCCTACTGCTGCTGCCGCTGCTGCATCTCTCATGTCTGATGGTGGGGGTACTACCTTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000003 GO:0000414 GO:0000428 GO:0001101 GO:0002831 GO:0003002 GO:0003006 GO:0003674 GO:0003712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006353 GO:0006355 GO:0006366 GO:0006369 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009966 GO:0009987 GO:0010033 GO:0010219 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0010646 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016591 GO:0016592 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0023051 GO:0030880 GO:0031047 GO:0031050 GO:0031056 GO:0031060 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031399 GO:0031554 GO:0031974 GO:0031981 GO:0032101 GO:0032268 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032991 GO:0033043 GO:0033044 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0040034 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043244 GO:0043254 GO:0043331 GO:0043900 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048442 GO:0048443 GO:0048464 GO:0048465 GO:0048466 GO:0048467 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051252 GO:0051253 GO:0051716 GO:0055029 GO:0060255 GO:0061458 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090567 GO:0090575 GO:0097305 GO:0097659 GO:0099402 GO:0140110 GO:1900150 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1902275 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000026 GO:2000028 GO:2000031 GO:2000112 GO:2000113 GO:2000142 GO:2000241 GO:2001023 GO:2001038 GO:2001141 GO:2001253
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

230

Amino Acids

25.05

Weight (kDa)

7.05

Isoelectric Point (pI)

39.17

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 260
Acc36I ACCTGC 1 cut(s) 260
AciI CCGC 1 cut(s) 648
AclWI GGATC 1 cut(s) 375
AcsI RAATTY 1 cut(s) 615
AcuI CTGAAG 2 cut(s) 47, 567
AfaI GTAC 3 cut(s) 125, 183, 682
AfiI CCNNNNNNNGG 1 cut(s) 120
AgsI TTSAA 5 cut(s) 44, 97, 215, 512, 621
AluBI AGCT 2 cut(s) 179, 479
AluI AGCT 2 cut(s) 179, 479
AlwI GGATC 1 cut(s) 375
AlwNI CAGNNNCTG 2 cut(s) 275, 524
Ama87I CYCGRG 1 cut(s) 494
AoxI GGCC 1 cut(s) 110
ApeKI GCWGC 4 cut(s) 641, 644, 650, 653
ApoI RAATTY 1 cut(s) 615
AspS9I GGNCC 2 cut(s) 100, 111
AsuC2I CCSGG 3 cut(s) 495, 496, 612
AvaI CYCGRG 1 cut(s) 494
AvaII GGWCC 1 cut(s) 100
BbvI GCAGC 4 cut(s) 628, 631, 637, 640
BccI CCATC 1 cut(s) 665
BcgI CGANNNNNNTGC 4 cut(s) 186, 220, 566, 600
BciVI GTATCC 1 cut(s) 492
BcnI CCSGG 3 cut(s) 495, 496, 612
BfuAI ACCTGC 1 cut(s) 260
BfuI GTATCC 1 cut(s) 492
BisI GCNGC 5 cut(s) 642, 645, 648, 651, 654
BlpI GCTNAGC 1 cut(s) 276
BlsI GCNGC 5 cut(s) 643, 646, 649, 652, 655
Bme1390I CCNGG 3 cut(s) 495, 496, 612
Bme18I GGWCC 1 cut(s) 100
BmeT110I CYCGRG 1 cut(s) 494
BmgT120I GGNCC 2 cut(s) 100, 111
BmrFI CCNGG 3 cut(s) 495, 496, 612
BmrI ACTGGG 1 cut(s) 633
BmsI GCATC 3 cut(s) 441, 536, 665
BmuI ACTGGG 1 cut(s) 633
BplI GAGNNNNNCTC 2 cut(s) 269, 301
Bpu1102I GCTNAGC 1 cut(s) 276
BpuEI CTTGAG 1 cut(s) 71
BpuMI CCSGG 3 cut(s) 495, 496, 612
BsaJI CCNNGG 1 cut(s) 494
Bsc4I CCNNNNNNNGG 1 cut(s) 120
Bse1I ACTGG 1 cut(s) 628
BseDI CCNNGG 1 cut(s) 494
BseLI CCNNNNNNNGG 1 cut(s) 120
BseMII CTCAG 4 cut(s) 180, 267, 300, 371
BseNI ACTGG 1 cut(s) 628
BseXI GCAGC 4 cut(s) 628, 631, 637, 640
BsgI GTGCAG 1 cut(s) 288
BshFI GGCC 1 cut(s) 112
BsiHKCI CYCGRG 1 cut(s) 494
BsiSI CCGG 2 cut(s) 495, 611
BslFI GGGAC 1 cut(s) 467
BslI CCNNNNNNNGG 1 cut(s) 120
BsmFI GGGAC 1 cut(s) 467
BsnI GGCC 1 cut(s) 112
BsoBI CYCGRG 1 cut(s) 494
Bsp143I GATC 3 cut(s) 150, 306, 367
Bsp1720I GCTNAGC 1 cut(s) 276
BspACI CCGC 1 cut(s) 648
BspANI GGCC 1 cut(s) 112
BspCNI CTCAG 4 cut(s) 181, 268, 299, 372
BspHI TCATGA 1 cut(s) 370
BspMI ACCTGC 1 cut(s) 260
BspPI GGATC 1 cut(s) 375
BsrI ACTGG 1 cut(s) 628
BssECI CCNNGG 1 cut(s) 494
BssMI GATC 3 cut(s) 150, 306, 367
Bst4CI ACNGT 5 cut(s) 238, 304, 427, 433, 504
BstC8I GCNNGC 2 cut(s) 322, 416
BstDEI CTNAG 5 cut(s) 119, 189, 276, 286, 380
BstKTI GATC 3 cut(s) 153, 309, 370
BstMBI GATC 3 cut(s) 150, 306, 367
BstMWI GCNNNNNNNGC 4 cut(s) 321, 647, 650, 653
BstNSI RCATGY 1 cut(s) 41
BstSCI CCNGG 3 cut(s) 493, 494, 610
BstV1I GCAGC 4 cut(s) 628, 631, 637, 640
BsuI GTATCC 1 cut(s) 492
BsuRI GGCC 1 cut(s) 112
BtgZI GCGATG 1 cut(s) 272
BtsI GCAGTG 1 cut(s) 567
BtsIMutI CAGTG 1 cut(s) 567
BveI ACCTGC 1 cut(s) 260
Cac8I GCNNGC 2 cut(s) 322, 416
CaiI CAGNNNCTG 2 cut(s) 275, 524
CciI TCATGA 1 cut(s) 370
Cfr13I GGNCC 2 cut(s) 100, 111
Cfr9I CCCGGG 1 cut(s) 494
CseI GACGC 1 cut(s) 543
Csp6I GTAC 3 cut(s) 124, 182, 681
CviAII CATG 5 cut(s) 38, 104, 231, 371, 664
CviJI RGCY 6 cut(s) 47, 112, 179, 357, 479, 521
CviKI_1 RGCY 6 cut(s) 47, 112, 179, 357, 479, 521
CviQI GTAC 3 cut(s) 124, 182, 681
DdeI CTNAG 5 cut(s) 119, 189, 276, 286, 380
DpnI GATC 3 cut(s) 152, 308, 369
DpnII GATC 3 cut(s) 150, 306, 367
Eco47I GGWCC 1 cut(s) 100
Eco57I CTGAAG 2 cut(s) 47, 567
Eco88I CYCGRG 1 cut(s) 494
FaeI CATG 5 cut(s) 41, 107, 234, 374, 667
FaqI GGGAC 1 cut(s) 467
FatI CATG 5 cut(s) 37, 103, 230, 370, 663
Fnu4HI GCNGC 5 cut(s) 642, 645, 648, 651, 654
Fsp4HI GCNGC 5 cut(s) 642, 645, 648, 651, 654
GluI GCNGC 5 cut(s) 642, 645, 648, 651, 654
HaeIII GGCC 1 cut(s) 112
HapII CCGG 2 cut(s) 495, 611
HgaI GACGC 1 cut(s) 543
Hin1II CATG 5 cut(s) 41, 107, 234, 374, 667
HinfI GANTC 2 cut(s) 21, 55
HpaII CCGG 2 cut(s) 495, 611
Hpy188I TCNGA 4 cut(s) 176, 190, 535, 670
Hpy188III TCNNGA 3 cut(s) 212, 371, 406
Hpy99I CGWCG 1 cut(s) 559
HpyAV CCTTC 2 cut(s) 91, 195
HpyCH4III ACNGT 5 cut(s) 238, 304, 427, 433, 504
HpyCH4V TGCA 7 cut(s) 207, 269, 350, 527, 587, 598, 656
HpyF10VI GCNNNNNNNGC 4 cut(s) 321, 647, 650, 653
HpyF3I CTNAG 5 cut(s) 119, 189, 276, 286, 380
Hsp92II CATG 5 cut(s) 41, 107, 234, 374, 667
Kzo9I GATC 3 cut(s) 150, 306, 367
Lsp1109I GCAGC 4 cut(s) 628, 631, 637, 640
LweI GCATC 3 cut(s) 441, 536, 665
MaeIII GTNAC 4 cut(s) 375, 427, 487, 514
MalI GATC 3 cut(s) 152, 308, 369
MboI GATC 3 cut(s) 150, 306, 367
MboII GAAGA 2 cut(s) 50, 53
MluCI AATT 1 cut(s) 615
MmeI TCCRAC 1 cut(s) 345
MnlI CCTC 6 cut(s) 184, 234, 257, 375, 404, 602
MseI TTAA 1 cut(s) 444
MslI CAYNNNNRTG 1 cut(s) 419
MspA1I CMGCKG 1 cut(s) 650
MspI CCGG 2 cut(s) 495, 611
MspR9I CCNGG 3 cut(s) 495, 496, 612
MwoI GCNNNNNNNGC 4 cut(s) 321, 647, 650, 653
NciI CCSGG 3 cut(s) 495, 496, 612
NdeII GATC 3 cut(s) 150, 306, 367
NlaIII CATG 5 cut(s) 41, 107, 234, 374, 667
NmuCI GTSAC 1 cut(s) 427
NspI RCATGY 1 cut(s) 41
PagI TCATGA 1 cut(s) 370
PaqCI CACCTGC 1 cut(s) 260
PfeI GAWTC 2 cut(s) 21, 55
PflFI GACNNNGTC 1 cut(s) 433
PkrI GCNGC 5 cut(s) 643, 646, 649, 652, 655
PspPI GGNCC 2 cut(s) 100, 111
PstNI CAGNNNCTG 2 cut(s) 275, 524
PsyI GACNNNGTC 1 cut(s) 433
RsaI GTAC 3 cut(s) 125, 183, 682
RsaNI GTAC 3 cut(s) 124, 182, 681
RseI CAYNNNNRTG 1 cut(s) 419
SaqAI TTAA 1 cut(s) 444
SatI GCNGC 5 cut(s) 642, 645, 648, 651, 654
Sau3AI GATC 3 cut(s) 150, 306, 367
Sau96I GGNCC 2 cut(s) 100, 111
ScrFI CCNGG 3 cut(s) 495, 496, 612
SfaNI GCATC 3 cut(s) 441, 536, 665
SinI GGWCC 1 cut(s) 100
SmaI CCCGGG 1 cut(s) 496
SmiMI CAYNNNNRTG 1 cut(s) 419
SmlI CTYRAG 1 cut(s) 50
SmoI CTYRAG 1 cut(s) 50
Sse9I AATT 1 cut(s) 615
SsiI CCGC 1 cut(s) 648
StyD4I CCNGG 3 cut(s) 493, 494, 610
TaaI ACNGT 5 cut(s) 238, 304, 427, 433, 504
TaqI TCGA 2 cut(s) 196, 309
TasI AATT 1 cut(s) 615
TauI GCSGC 1 cut(s) 650
TfiI GAWTC 2 cut(s) 21, 55
Tru1I TTAA 1 cut(s) 444
Tru9I TTAA 1 cut(s) 444
TscAI CASTG 1 cut(s) 567
TseFI GTSAC 1 cut(s) 427
TseI GCWGC 4 cut(s) 641, 644, 650, 653
Tsp45I GTSAC 1 cut(s) 427
TspDTI ATGAA 1 cut(s) 489
TspMI CCCGGG 1 cut(s) 494
TspRI CASTG 1 cut(s) 567
Tth111I GACNNNGTC 1 cut(s) 433
VpaK11BI GGWCC 1 cut(s) 100
XapI RAATTY 1 cut(s) 615
XceI RCATGY 1 cut(s) 41
XmaI CCCGGG 1 cut(s) 494
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.