Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007101.1

Orthogroup ID

OG0002479

Physical Location & Seq

Genomic Coordinates Reverse (-)

7881 .. 9366

Gene Structure 1486 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007101.1_g000002.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 621 bp

atgttgaagcccttgagattcttcttcagggccggtctttgtggtgttcgcagagaacctttgaaggtccatgagatatgccttaaaagtggcccaaacttaggagctgtaccttctgaggttcgacttatttgcaatcttgaacaaactgaacctacatggactgtgaggttcgtggggggtgcgatgagaggtgcaggtgctgagcaactctcagttttagtaagaactgtgatcgaaagcaaagcaagcaagaatgtgcttcgcttattttatgcacttggctacaagttggatcatgagttactgagagtcgggtttgcgttccatttccagagaggcacgcagatgactgtgactgtgtcatcagttaataagatgccacaactacacaatacagatgaagctgtccctgtaactcccgggatacagttggttgaagttacagcccctgcatcgtctgaaacttatactgaagttgcgtcggcagtgtcatcattttgcgaatatcttgcaccgctcctgcatttgtcaaaaccaggaatttcaactggggttgttcctactgccgctgctgctgccgcatctctcatgtctgatggtgggggtactaccttatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000003 GO:0000414 GO:0000428 GO:0001101 GO:0002831 GO:0003002 GO:0003006 GO:0003674 GO:0003712 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005654 GO:0005667 GO:0006139 GO:0006351 GO:0006353 GO:0006355 GO:0006366 GO:0006369 GO:0006396 GO:0006725 GO:0006807 GO:0007275 GO:0007389 GO:0008150 GO:0008152 GO:0009058 GO:0009059 GO:0009719 GO:0009723 GO:0009725 GO:0009737 GO:0009791 GO:0009889 GO:0009890 GO:0009892 GO:0009908 GO:0009966 GO:0009987 GO:0010033 GO:0010219 GO:0010467 GO:0010468 GO:0010556 GO:0010558 GO:0010605 GO:0010608 GO:0010629 GO:0010646 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0016591 GO:0016592 GO:0018130 GO:0019219 GO:0019222 GO:0019438 GO:0022414 GO:0023051 GO:0030880 GO:0031047 GO:0031050 GO:0031056 GO:0031060 GO:0031323 GO:0031324 GO:0031326 GO:0031327 GO:0031347 GO:0031399 GO:0031554 GO:0031974 GO:0031981 GO:0032101 GO:0032268 GO:0032501 GO:0032502 GO:0032774 GO:0032784 GO:0032991 GO:0033043 GO:0033044 GO:0033993 GO:0034641 GO:0034645 GO:0034654 GO:0035194 GO:0035195 GO:0035196 GO:0040029 GO:0040034 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043244 GO:0043254 GO:0043331 GO:0043900 GO:0044087 GO:0044237 GO:0044238 GO:0044249 GO:0044260 GO:0044271 GO:0044422 GO:0044424 GO:0044428 GO:0044446 GO:0044451 GO:0044464 GO:0044798 GO:0045892 GO:0045934 GO:0046483 GO:0048367 GO:0048437 GO:0048438 GO:0048440 GO:0048441 GO:0048442 GO:0048443 GO:0048464 GO:0048465 GO:0048466 GO:0048467 GO:0048506 GO:0048509 GO:0048510 GO:0048519 GO:0048523 GO:0048580 GO:0048583 GO:0048608 GO:0048731 GO:0048827 GO:0048832 GO:0048833 GO:0048856 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051128 GO:0051171 GO:0051172 GO:0051239 GO:0051246 GO:0051252 GO:0051253 GO:0051716 GO:0055029 GO:0060255 GO:0061458 GO:0061695 GO:0065007 GO:0070013 GO:0070847 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0080090 GO:0080134 GO:0090304 GO:0090567 GO:0090575 GO:0097305 GO:0097659 GO:0099402 GO:0140110 GO:1900150 GO:1901360 GO:1901362 GO:1901576 GO:1901698 GO:1901699 GO:1901700 GO:1902275 GO:1902494 GO:1902679 GO:1903506 GO:1903507 GO:1990234 GO:2000026 GO:2000028 GO:2000031 GO:2000112 GO:2000113 GO:2000142 GO:2000241 GO:2001023 GO:2001038 GO:2001141 GO:2001253

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

206

Amino Acids

22.07

Weight (kDa)

8.73

Isoelectric Point (pI)

38.39

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0002479)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22370
fragaria_vesca	FvH4_5g37300 FvH4_5g37300 FvH4_5g37300
malus_domestica	MD15G1369800.v1.1
prunus_persica	Prupe.1G517500_v2.0.a1 Prupe.1G517500_v2.0.a1 Prupe.1G518900_v2.0.a1 Prupe.1G518900_v2.0.a1 Prupe.1G518900_v2.0.a1
pyrus_communis	pycom15g33090
rosa_chinensis	RchiOBHm_Chr5g0034471 RchiOBHm_Chr5g0038311 RchiOBHm_Chr7g0238871 RchiOBHm_Chr7g0238911
rosa_laevigata	RLG00000000798 RLG00000033846
rosa_multiflora	Rmu_sc0000764.1_g000001 Rmu_sc0004132.1_g000018 Rmu_sc0005542.1_g000003 Rmu_sc0007101.1_g000002
rosa_roxburghii	Rroxscaffold_1G00042690 Rroxscaffold_3G00221500
rosa_rugosa	Rorug05G0194800 Rorug05G0194800 Rorug05G0194800 Rorug05G0194900 Rorug07G0323900 Rorug07G0323900
rosa_samantha	Rh5AG238300 Rh5AG259300 Rh5BG263100 Rh5CG269100 Rh5CG317600 Rh5DG246600 Rh5DG272100 Rh7AG478400 Rh7BG450900
rosa_wichuraiana	Rw5G021760 Rw5G024270 Rw7G039940

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	188
Acc36I	ACCTGC	1 cut(s)	188
AccBSI	CCGCTC	1 cut(s)	520
AciI	CCGC	3 cut(s)	518, 570, 582
AclWI	GGATC	1 cut(s)	303
AcsI	RAATTY	1 cut(s)	543
AcuI	CTGAAG	2 cut(s)	10, 495
AfaI	GTAC	2 cut(s)	111, 610
AfiI	CCNNNNNNNGG	1 cut(s)	101
AgsI	TTSAA	5 cut(s)	7, 64, 143, 440, 549
AjnI	CCWGG	1 cut(s)	538
AluBI	AGCT	2 cut(s)	107, 407
AluI	AGCT	2 cut(s)	107, 407
AlwI	GGATC	1 cut(s)	303
AlwNI	CAGNNNCTG	2 cut(s)	203, 452
Ama87I	CYCGRG	1 cut(s)	422
AoxI	GGCC	2 cut(s)	30, 91
ApeKI	GCWGC	3 cut(s)	572, 575, 578
ApoI	RAATTY	1 cut(s)	543
AspS9I	GGNCC	3 cut(s)	30, 67, 92
AsuC2I	CCSGG	2 cut(s)	423, 424
AvaI	CYCGRG	1 cut(s)	422
AvaII	GGWCC	1 cut(s)	67
BbvI	GCAGC	3 cut(s)	559, 562, 565
BccI	CCATC	1 cut(s)	593
BcgI	CGANNNNNNTGC	4 cut(s)	114, 148, 494, 528
BciT130I	CCWGG	1 cut(s)	540
BciVI	GTATCC	1 cut(s)	420
BcnI	CCSGG	2 cut(s)	423, 424
BfuAI	ACCTGC	1 cut(s)	188
BfuI	GTATCC	1 cut(s)	420
BisI	GCNGC	5 cut(s)	570, 573, 576, 579, 582
BlpI	GCTNAGC	1 cut(s)	204
BlsI	GCNGC	5 cut(s)	571, 574, 577, 580, 583
Bme1390I	CCNGG	3 cut(s)	423, 424, 540
Bme18I	GGWCC	1 cut(s)	67
BmeT110I	CYCGRG	1 cut(s)	422
BmgT120I	GGNCC	3 cut(s)	30, 67, 92
BmrFI	CCNGG	3 cut(s)	423, 424, 540
BmrI	ACTGGG	1 cut(s)	561
BmsI	GCATC	3 cut(s)	369, 464, 593
BmuI	ACTGGG	1 cut(s)	561
BplI	GAGNNNNNCTC	2 cut(s)	197, 229
Bpu1102I	GCTNAGC	1 cut(s)	204
BpuEI	CTTGAG	1 cut(s)	34
BpuMI	CCSGG	2 cut(s)	423, 424
BsaJI	CCNNGG	1 cut(s)	422
Bsc4I	CCNNNNNNNGG	1 cut(s)	101
Bse118I	RCCGGY	1 cut(s)	32
Bse1I	ACTGG	1 cut(s)	556
BseBI	CCWGG	1 cut(s)	540
BseDI	CCNNGG	1 cut(s)	422
BseLI	CCNNNNNNNGG	1 cut(s)	101
BseMII	CTCAG	4 cut(s)	108, 195, 228, 299
BseNI	ACTGG	1 cut(s)	556
BseXI	GCAGC	3 cut(s)	559, 562, 565
BsgI	GTGCAG	1 cut(s)	216
BshFI	GGCC	2 cut(s)	32, 93
BsiHKCI	CYCGRG	1 cut(s)	422
BsiSI	CCGG	2 cut(s)	33, 423
BslFI	GGGAC	1 cut(s)	395
BslI	CCNNNNNNNGG	1 cut(s)	101
BsmFI	GGGAC	1 cut(s)	395
BsnI	GGCC	2 cut(s)	32, 93
BsoBI	CYCGRG	1 cut(s)	422
Bsp143I	GATC	2 cut(s)	234, 295
Bsp1720I	GCTNAGC	1 cut(s)	204
BspACI	CCGC	3 cut(s)	518, 570, 582
BspANI	GGCC	2 cut(s)	32, 93
BspCNI	CTCAG	4 cut(s)	109, 196, 227, 300
BspHI	TCATGA	1 cut(s)	298
BspMI	ACCTGC	1 cut(s)	188
BspPI	GGATC	1 cut(s)	303
BsrBI	CCGCTC	1 cut(s)	520
BsrFI	RCCGGY	1 cut(s)	32
BsrI	ACTGG	1 cut(s)	556
BssAI	RCCGGY	1 cut(s)	32
BssECI	CCNNGG	1 cut(s)	422
BssMI	GATC	2 cut(s)	234, 295
Bst2UI	CCWGG	1 cut(s)	540
Bst4CI	ACNGT	5 cut(s)	166, 232, 355, 361, 432
BstC8I	GCNNGC	2 cut(s)	250, 344
BstDEI	CTNAG	5 cut(s)	100, 117, 204, 214, 308
BstKTI	GATC	2 cut(s)	237, 298
BstMBI	GATC	2 cut(s)	234, 295
BstMWI	GCNNNNNNNGC	4 cut(s)	249, 575, 578, 581
BstNI	CCWGG	1 cut(s)	540
BstSCI	CCNGG	3 cut(s)	421, 422, 538
BstV1I	GCAGC	3 cut(s)	559, 562, 565
BsuI	GTATCC	1 cut(s)	420
BsuRI	GGCC	2 cut(s)	32, 93
BtgZI	GCGATG	1 cut(s)	200
BtsI	GCAGTG	1 cut(s)	495
BtsIMutI	CAGTG	1 cut(s)	495
BveI	ACCTGC	1 cut(s)	188
Cac8I	GCNNGC	2 cut(s)	250, 344
CaiI	CAGNNNCTG	2 cut(s)	203, 452
CciI	TCATGA	1 cut(s)	298
Cfr10I	RCCGGY	1 cut(s)	32
Cfr13I	GGNCC	3 cut(s)	30, 67, 92
Cfr9I	CCCGGG	1 cut(s)	422
CseI	GACGC	1 cut(s)	471
Csp6I	GTAC	2 cut(s)	110, 609
CviAII	CATG	4 cut(s)	71, 159, 299, 592
CviJI	RGCY	7 cut(s)	10, 32, 93, 107, 285, 407, 449
CviKI_1	RGCY	7 cut(s)	10, 32, 93, 107, 285, 407, 449
CviQI	GTAC	2 cut(s)	110, 609
DdeI	CTNAG	5 cut(s)	100, 117, 204, 214, 308
DpnI	GATC	2 cut(s)	236, 297
DpnII	GATC	2 cut(s)	234, 295
Eco47I	GGWCC	1 cut(s)	67
Eco57I	CTGAAG	2 cut(s)	10, 495
Eco88I	CYCGRG	1 cut(s)	422
EcoRII	CCWGG	1 cut(s)	538
FaeI	CATG	4 cut(s)	74, 162, 302, 595
FaiI	YATR	8 cut(s)	72, 79, 160, 276, 300, 471, 593, 619
FaqI	GGGAC	1 cut(s)	395
FatI	CATG	4 cut(s)	70, 158, 298, 591
Fnu4HI	GCNGC	5 cut(s)	570, 573, 576, 579, 582
Fsp4HI	GCNGC	5 cut(s)	570, 573, 576, 579, 582
GluI	GCNGC	5 cut(s)	570, 573, 576, 579, 582
HaeIII	GGCC	2 cut(s)	32, 93
HapII	CCGG	2 cut(s)	33, 423
HgaI	GACGC	1 cut(s)	471
Hin1II	CATG	4 cut(s)	74, 162, 302, 595
HinfI	GANTC	2 cut(s)	18, 312
HpaII	CCGG	2 cut(s)	33, 423
Hpy188I	TCNGA	3 cut(s)	118, 463, 598
Hpy188III	TCNNGA	3 cut(s)	140, 299, 334
Hpy99I	CGWCG	1 cut(s)	487
HpyAV	CCTTC	2 cut(s)	58, 123
HpyCH4III	ACNGT	5 cut(s)	166, 232, 355, 361, 432
HpyCH4V	TGCA	6 cut(s)	135, 197, 278, 455, 515, 526
HpyF10VI	GCNNNNNNNGC	4 cut(s)	249, 575, 578, 581
HpyF3I	CTNAG	5 cut(s)	100, 117, 204, 214, 308
Hsp92II	CATG	4 cut(s)	74, 162, 302, 595
Kzo9I	GATC	2 cut(s)	234, 295
LmnI	GCTCC	2 cut(s)	104, 525
Lsp1109I	GCAGC	3 cut(s)	559, 562, 565
LweI	GCATC	3 cut(s)	369, 464, 593
MaeIII	GTNAC	4 cut(s)	303, 355, 415, 442
MalI	GATC	2 cut(s)	236, 297
MbiI	CCGCTC	1 cut(s)	520
MboI	GATC	2 cut(s)	234, 295
MboII	GAAGA	2 cut(s)	13, 16
MluCI	AATT	1 cut(s)	543
MlyI	GAGTC	1 cut(s)	321
MmeI	TCCRAC	1 cut(s)	273
MnlI	CCTC	4 cut(s)	112, 162, 185, 332
MseI	TTAA	2 cut(s)	84, 372
MslI	CAYNNNNRTG	1 cut(s)	347
MspA1I	CMGCKG	1 cut(s)	572
MspI	CCGG	2 cut(s)	33, 423
MspR9I	CCNGG	3 cut(s)	423, 424, 540
MvaI	CCWGG	1 cut(s)	540
MwoI	GCNNNNNNNGC	4 cut(s)	249, 575, 578, 581
NciI	CCSGG	2 cut(s)	423, 424
NdeII	GATC	2 cut(s)	234, 295
NlaIII	CATG	4 cut(s)	74, 162, 302, 595
NmuCI	GTSAC	1 cut(s)	355
PagI	TCATGA	1 cut(s)	298
PaqCI	CACCTGC	1 cut(s)	188
PfeI	GAWTC	1 cut(s)	18
PflFI	GACNNNGTC	1 cut(s)	361
PkrI	GCNGC	5 cut(s)	571, 574, 577, 580, 583
PleI	GAGTC	1 cut(s)	320
PpsI	GAGTC	1 cut(s)	320
Psp6I	CCWGG	1 cut(s)	538
PspGI	CCWGG	1 cut(s)	538
PspPI	GGNCC	3 cut(s)	30, 67, 92
PstNI	CAGNNNCTG	2 cut(s)	203, 452
PsyI	GACNNNGTC	1 cut(s)	361
RsaI	GTAC	2 cut(s)	111, 610
RsaNI	GTAC	2 cut(s)	110, 609
RseI	CAYNNNNRTG	1 cut(s)	347
SaqAI	TTAA	2 cut(s)	84, 372
SatI	GCNGC	5 cut(s)	570, 573, 576, 579, 582
Sau3AI	GATC	2 cut(s)	234, 295
Sau96I	GGNCC	3 cut(s)	30, 67, 92
SchI	GAGTC	1 cut(s)	321
ScrFI	CCNGG	3 cut(s)	423, 424, 540
SfaNI	GCATC	3 cut(s)	369, 464, 593
SinI	GGWCC	1 cut(s)	67
SmaI	CCCGGG	1 cut(s)	424
SmiMI	CAYNNNNRTG	1 cut(s)	347
SmlI	CTYRAG	1 cut(s)	13
SmoI	CTYRAG	1 cut(s)	13
Sse9I	AATT	1 cut(s)	543
SsiI	CCGC	3 cut(s)	518, 570, 582
StyD4I	CCNGG	3 cut(s)	421, 422, 538
TaaI	ACNGT	5 cut(s)	166, 232, 355, 361, 432
TaqI	TCGA	2 cut(s)	124, 237
TasI	AATT	1 cut(s)	543
TauI	GCSGC	2 cut(s)	572, 584
TfiI	GAWTC	1 cut(s)	18
Tru1I	TTAA	2 cut(s)	84, 372
Tru9I	TTAA	2 cut(s)	84, 372
TscAI	CASTG	1 cut(s)	495
TseFI	GTSAC	1 cut(s)	355
TseI	GCWGC	3 cut(s)	572, 575, 578
Tsp45I	GTSAC	1 cut(s)	355
TspDTI	ATGAA	1 cut(s)	417
TspMI	CCCGGG	1 cut(s)	422
TspRI	CASTG	1 cut(s)	495
Tth111I	GACNNNGTC	1 cut(s)	361
VpaK11BI	GGWCC	1 cut(s)	67
XapI	RAATTY	1 cut(s)	543
XmaI	CCCGGG	1 cut(s)	422

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.