Rmu_sc0004269.1_g000002

The B regulatory subunit might modulate substrate selectivity and catalytic activity, and also might direct the localization of the catalytic enzyme to a particular subcellular compartment

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004269.1
OG0004014
Physical Location & Seq
Reverse (-)
760 .. 1044
285 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 285 bp
atggaagccgaagctcaagaatcgtgcccccaaaacgacgctgtcatcacctccttctgcgagatcacctacgcctccaaacaagaagccctcttcttcctcgaatcccacaattacgacctcgacgccgccgtttccactttcttgtacaacgaaaacgccgccgccgtcaccgtcaccaacccggtccagccctcccactcgctctcgccgtctccatcacacttgcccgagtactcgccctcccagtcgacccctcgatgtttcccaagtcctccttattaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000096 GO:0000902 GO:0000904 GO:0002682 GO:0002683 GO:0003674 GO:0003676 GO:0003723 GO:0003727 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005739 GO:0005829 GO:0006082 GO:0006139 GO:0006520 GO:0006534 GO:0006555 GO:0006575 GO:0006725 GO:0006732 GO:0006790 GO:0006807 GO:0006950 GO:0006979 GO:0008150 GO:0008152 GO:0008187 GO:0008266 GO:0009058 GO:0009066 GO:0009069 GO:0009116 GO:0009119 GO:0009653 GO:0009759 GO:0009888 GO:0009966 GO:0009968 GO:0009987 GO:0010026 GO:0010090 GO:0010646 GO:0010648 GO:0016043 GO:0016143 GO:0016144 GO:0017144 GO:0018130 GO:0019222 GO:0019438 GO:0019748 GO:0019752 GO:0019757 GO:0019758 GO:0019760 GO:0019761 GO:0023051 GO:0023057 GO:0030154 GO:0031323 GO:0031347 GO:0031348 GO:0032502 GO:0032989 GO:0033353 GO:0034641 GO:0042278 GO:0042343 GO:0042430 GO:0042435 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044271 GO:0044272 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0044550 GO:0045088 GO:0045824 GO:0046128 GO:0046439 GO:0046483 GO:0046498 GO:0046500 GO:0048468 GO:0048519 GO:0048523 GO:0048583 GO:0048585 GO:0048856 GO:0048869 GO:0050776 GO:0050777 GO:0050789 GO:0050793 GO:0050794 GO:0050896 GO:0051186 GO:0055086 GO:0065007 GO:0071704 GO:0071840 GO:0072521 GO:0080134 GO:0080183 GO:0090342 GO:0090558 GO:0090626 GO:0097159 GO:1900457 GO:1900458 GO:1901135 GO:1901137 GO:1901360 GO:1901362 GO:1901363 GO:1901564 GO:1901566 GO:1901576 GO:1901605 GO:1901657 GO:1901659 GO:2000377
KEGG Pathways
Metabolic & Signaling
ko03015 ko04071 ko04113 ko04114 ko04151 ko04152 ko04261 ko04728 ko05165 map03015 map04071 map04113 map04114 map04151 map04152 map04261 map04728 map05165
Pfam Domains
Protein Families
B56

Protein Analysis

94

Amino Acids

10.3

Weight (kDa)

4.28

Isoelectric Point (pI)

82.34

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
UBA_4 PF14555 13 - 51 2.5e-10 UBA-like domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 1 cut(s) 251
AciI CCGC 3 cut(s) 129, 162, 165
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 2 cut(s) 149, 236
AluBI AGCT 1 cut(s) 14
AluI AGCT 1 cut(s) 14
Alw26I GTCTC 1 cut(s) 219
Ama87I CYCGRG 1 cut(s) 230
AspS9I GGNCC 1 cut(s) 187
AsuC2I CCSGG 1 cut(s) 185
AsuHPI GGTGA 4 cut(s) 40, 58, 163, 169
AvaI CYCGRG 1 cut(s) 230
AvaII GGWCC 1 cut(s) 187
BaeGI GKGCMC 1 cut(s) 29
BccI CCATC 1 cut(s) 226
BceAI ACGGC 3 cut(s) 116, 152, 196
BcnI CCSGG 1 cut(s) 185
BcoDI GTCTC 1 cut(s) 219
BisI GCNGC 3 cut(s) 129, 162, 165
BlsI GCNGC 3 cut(s) 130, 163, 166
BmcAI AGTACT 1 cut(s) 236
Bme1390I CCNGG 1 cut(s) 185
Bme18I GGWCC 1 cut(s) 187
BmeT110I CYCGRG 1 cut(s) 230
BmgT120I GGNCC 1 cut(s) 187
BmrFI CCNGG 1 cut(s) 185
BmrI ACTGGG 1 cut(s) 241
BmuI ACTGGG 1 cut(s) 241
BpuMI CCSGG 1 cut(s) 185
BsaHI GRCGYC 1 cut(s) 126
BsaXI ACNNNNNCTCC 2 cut(s) 227, 257
Bse1I ACTGG 1 cut(s) 247
BseNI ACTGG 1 cut(s) 247
BseSI GKGCMC 1 cut(s) 29
BsiHKCI CYCGRG 1 cut(s) 230
BsiSI CCGG 1 cut(s) 185
BsmAI GTCTC 1 cut(s) 219
BsmBI CGTCTC 1 cut(s) 219
BsoBI CYCGRG 1 cut(s) 230
Bsp1286I GDGCHC 1 cut(s) 29
Bsp1407I TGTACA 1 cut(s) 147
Bsp143I GATC 1 cut(s) 63
BspACI CCGC 3 cut(s) 129, 162, 165
BsrGI TGTACA 1 cut(s) 147
BsrI ACTGG 1 cut(s) 247
BssMI GATC 1 cut(s) 63
BssNI GRCGYC 1 cut(s) 126
Bst4CI ACNGT 1 cut(s) 175
Bst6I CTCTTC 1 cut(s) 98
BstACI GRCGYC 1 cut(s) 126
BstAUI TGTACA 1 cut(s) 147
BstKTI GATC 1 cut(s) 66
BstMAI GTCTC 1 cut(s) 219
BstMBI GATC 1 cut(s) 63
BstSCI CCNGG 1 cut(s) 183
BstSLI GKGCMC 1 cut(s) 29
Cfr13I GGNCC 1 cut(s) 187
CseI GACGC 2 cut(s) 47, 134
Csp6I GTAC 2 cut(s) 148, 235
CviJI RGCY 4 cut(s) 8, 14, 89, 193
CviKI_1 RGCY 4 cut(s) 8, 14, 89, 193
CviQI GTAC 2 cut(s) 148, 235
DpnI GATC 1 cut(s) 65
DpnII GATC 1 cut(s) 63
Eam1104I CTCTTC 1 cut(s) 98
EarI CTCTTC 1 cut(s) 98
Eco47I GGWCC 1 cut(s) 187
Eco88I CYCGRG 1 cut(s) 230
Esp3I CGTCTC 1 cut(s) 219
FalI AAGNNNNNCTT 1 cut(s) 262
FblI GTMKAC 1 cut(s) 251
Fnu4HI GCNGC 3 cut(s) 129, 162, 165
Fsp4HI GCNGC 3 cut(s) 129, 162, 165
GluI GCNGC 3 cut(s) 129, 162, 165
HapII CCGG 1 cut(s) 185
HgaI GACGC 2 cut(s) 47, 134
Hin1I GRCGYC 1 cut(s) 126
HincII GTYRAC 1 cut(s) 252
HindII GTYRAC 1 cut(s) 252
HinfI GANTC 2 cut(s) 20, 104
HpaII CCGG 1 cut(s) 185
HphI GGTGA 4 cut(s) 40, 58, 163, 169
Hpy166II GTNNAC 1 cut(s) 252
Hpy188III TCNNGA 1 cut(s) 17
Hpy8I GTNNAC 1 cut(s) 252
Hpy99I CGWCG 2 cut(s) 41, 128
HpyAV CCTTC 1 cut(s) 64
HpyCH4III ACNGT 1 cut(s) 175
Hsp92I GRCGYC 1 cut(s) 126
Kzo9I GATC 1 cut(s) 63
LpnPI CCDG 3 cut(s) 198, 203, 260
MaeIII GTNAC 2 cut(s) 169, 175
MalI GATC 1 cut(s) 65
MboI GATC 1 cut(s) 63
MboII GAAGA 2 cut(s) 85, 88
MhlI GDGCHC 1 cut(s) 29
MluCI AATT 1 cut(s) 112
MnlI CCTC 9 cut(s) 61, 85, 101, 110, 131, 205, 253, 267, 285
MseI TTAA 1 cut(s) 283
MspI CCGG 1 cut(s) 185
MspR9I CCNGG 1 cut(s) 185
NciI CCSGG 1 cut(s) 185
NdeII GATC 1 cut(s) 63
NmuCI GTSAC 2 cut(s) 169, 175
PcsI WCGNNNNNNNCGW 3 cut(s) 129, 165, 209
PfeI GAWTC 2 cut(s) 20, 104
PflFI GACNNNGTC 1 cut(s) 41
PkrI GCNGC 3 cut(s) 130, 163, 166
PspPI GGNCC 1 cut(s) 187
PsyI GACNNNGTC 1 cut(s) 41
RsaI GTAC 2 cut(s) 149, 236
RsaNI GTAC 2 cut(s) 148, 235
SalI GTCGAC 1 cut(s) 250
SaqAI TTAA 1 cut(s) 283
SatI GCNGC 3 cut(s) 129, 162, 165
Sau3AI GATC 1 cut(s) 63
Sau96I GGNCC 1 cut(s) 187
ScaI AGTACT 1 cut(s) 236
ScrFI CCNGG 1 cut(s) 185
SduI GDGCHC 1 cut(s) 29
SetI ASST 4 cut(s) 16, 53, 71, 123
SinI GGWCC 1 cut(s) 187
SmlI CTYRAG 1 cut(s) 15
SmoI CTYRAG 1 cut(s) 15
Sse9I AATT 1 cut(s) 112
SsiI CCGC 3 cut(s) 129, 162, 165
StyD4I CCNGG 1 cut(s) 183
TaaI ACNGT 1 cut(s) 175
TaqI TCGA 4 cut(s) 102, 123, 251, 259
TasI AATT 1 cut(s) 112
TatI WGTACW 2 cut(s) 147, 234
TauI GCSGC 3 cut(s) 131, 164, 167
TfiI GAWTC 2 cut(s) 20, 104
Tru1I TTAA 1 cut(s) 283
Tru9I TTAA 1 cut(s) 283
TseFI GTSAC 2 cut(s) 169, 175
Tsp45I GTSAC 2 cut(s) 169, 175
Tth111I GACNNNGTC 1 cut(s) 41
VpaK11BI GGWCC 1 cut(s) 187
XmiI GTMKAC 1 cut(s) 251
ZrmI AGTACT 1 cut(s) 236
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.