Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004465.1

Orthogroup ID

OG0009738

Physical Location & Seq

Genomic Coordinates Forward (+)

112286 .. 113413

Gene Structure 1128 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0004465.1_g000026.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atggttgattttacacagccttacatggaatcaggactagttgtagttgttcctatcaaacaggtaaaatcaaggccttgggctttcctgaagccatttactattgagatgtggttagtcaccggtgcattcttcctttttatgggagttgttgtttggattctagagcacaggattaatcacgagttccgtggagagaacactgtgagcactctaggacggctggtgctgattatatggttgtttgtggtgttgattatcaattcgagctatacagctagtttgacatcgatcctcactatacaacagctgacatcacggattgaggggatagacagcttgatatcaagtaatgatccaatcggaattcaagatgcgtcatttgcatggaattatttggttaatgagctcaacatagcagaagttgtcaaaacaatggttgccaagggatatgttcggggacaagatgcattaatcaaggggatttgtcaaaacaatgagtcctatcaagtatcagctactacaacgtccaaggattatgagttagcaattgaatatgggctcatcaaggcaaagaatcttttcaatcacctcaatagctcagggtatgtaggtcatgatacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009605 GO:0009611 GO:0009612 GO:0009628 GO:0009719 GO:0009987 GO:0010033 GO:0010034 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015276 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0033554 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070417 GO:0070588 GO:0070838 GO:0070887 GO:0071214 GO:0071229 GO:0071230 GO:0071236 GO:0071260 GO:0071310 GO:0071311 GO:0071417 GO:0071495 GO:0071496 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0104004 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

208

Amino Acids

23.37

Weight (kDa)

5.79

Isoelectric Point (pI)

25.16

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009738)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0392441
rosa_multiflora	Rmu_sc0004465.1_g000026 Rmu_sc0006576.1_g000023 Rmu_sc0007753.1_g000018
rosa_roxburghii	Rroxscaffold_1G00009700 Rroxscaffold_2G00130700 Rroxscaffold_4G00277550 Rroxscaffold_4G00309110 Rroxscaffold_4G00310040
rosa_samantha	Rh1DG085900 Rh1DG285100 Rh4AG080900 Rh4DG098600 Rh5BG267100 Rh5DG221200 Rh5DG273700 Rh5DG512300 Rh6AG030700 Rh6BG476200 Rh6CG512300 Rh6CG523800 Rh7AG262200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	2 cut(s)	286, 350
AcsI	RAATTY	1 cut(s)	366
AcuI	CTGAAG	1 cut(s)	110
AfiI	CCNNNNNNNGG	1 cut(s)	142
AgeI	ACCGGT	1 cut(s)	122
AgsI	TTSAA	3 cut(s)	371, 554, 586
AhlI	ACTAGT	1 cut(s)	37
AluBI	AGCT	7 cut(s)	270, 278, 310, 339, 409, 518, 600
AluI	AGCT	7 cut(s)	270, 278, 310, 339, 409, 518, 600
Alw21I	GWGCWC	3 cut(s)	171, 212, 411
AlwI	GGATC	2 cut(s)	286, 350
AoxI	GGCC	1 cut(s)	74
ApoI	RAATTY	1 cut(s)	366
AseI	ATTAAT	2 cut(s)	177, 473
AsiGI	ACCGGT	1 cut(s)	122
Asp700I	GAANNNNTTC	1 cut(s)	581
AsuHPI	GGTGA	2 cut(s)	112, 581
BanII	GRGCYC	2 cut(s)	411, 564
BauI	CACGAG	1 cut(s)	182
Bbv12I	GWGCWC	3 cut(s)	171, 212, 411
BceAI	ACGGC	1 cut(s)	236
BcuI	ACTAGT	1 cut(s)	37
BfaI	CTAG	4 cut(s)	38, 164, 215, 279
BmsI	GCATC	2 cut(s)	364, 457
Bpu10I	CCTNAGC	1 cut(s)	601
Bsa29I	ATCGAT	1 cut(s)	290
BsaJI	CCNNGG	4 cut(s)	77, 190, 444, 531
BsaWI	WCCGGW	1 cut(s)	122
BsaXI	ACNNNNNCTCC	2 cut(s)	138, 168
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse118I	RCCGGY	1 cut(s)	122
BseCI	ATCGAT	1 cut(s)	290
BseDI	CCNNGG	4 cut(s)	77, 190, 444, 531
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMII	CTCAG	1 cut(s)	615
BshFI	GGCC	1 cut(s)	76
BshTI	ACCGGT	1 cut(s)	122
BshVI	ATCGAT	1 cut(s)	290
BsiHKAI	GWGCWC	3 cut(s)	171, 212, 411
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	474
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	474
BsmI	GAATGC	1 cut(s)	128
BsnI	GGCC	1 cut(s)	76
Bsp1286I	GDGCHC	4 cut(s)	171, 212, 411, 564
Bsp143I	GATC	2 cut(s)	291, 355
BspANI	GGCC	1 cut(s)	76
BspCNI	CTCAG	1 cut(s)	614
BspDI	ATCGAT	1 cut(s)	290
BspHI	TCATGA	1 cut(s)	616
BspPI	GGATC	2 cut(s)	286, 350
BsrFI	RCCGGY	1 cut(s)	122
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	4 cut(s)	77, 190, 444, 531
BssMI	GATC	2 cut(s)	291, 355
BssSI	CACGAG	1 cut(s)	182
BssT1I	CCWWGG	3 cut(s)	77, 444, 531
Bst2BI	CACGAG	1 cut(s)	182
Bst4CI	ACNGT	1 cut(s)	205
BstDEI	CTNAG	2 cut(s)	601, 624
BstDSI	CCRYGG	1 cut(s)	190
BstKTI	GATC	2 cut(s)	294, 358
BstMBI	GATC	2 cut(s)	291, 355
BstMWI	GCNNNNNNNGC	1 cut(s)	383
Bsu15I	ATCGAT	1 cut(s)	290
BsuRI	GGCC	1 cut(s)	76
BsuTUI	ATCGAT	1 cut(s)	290
BtgI	CCRYGG	1 cut(s)	190
BtsIMutI	CAGTG	1 cut(s)	201
CciI	TCATGA	1 cut(s)	616
Cfr10I	RCCGGY	1 cut(s)	122
ClaI	ATCGAT	1 cut(s)	290
CseI	GACGC	1 cut(s)	366
CspAI	ACCGGT	1 cut(s)	122
CviAII	CATG	3 cut(s)	25, 387, 617
DdeI	CTNAG	2 cut(s)	601, 624
DpnI	GATC	2 cut(s)	293, 357
DpnII	GATC	2 cut(s)	291, 355
Ecl136II	GAGCTC	1 cut(s)	409
Eco130I	CCWWGG	3 cut(s)	77, 444, 531
Eco147I	AGGCCT	1 cut(s)	76
Eco24I	GRGCYC	2 cut(s)	411, 564
Eco32I	GATATC	1 cut(s)	345
Eco53kI	GAGCTC	1 cut(s)	409
Eco57I	CTGAAG	1 cut(s)	110
EcoICRI	GAGCTC	1 cut(s)	409
EcoRI	GAATTC	1 cut(s)	366
EcoRV	GATATC	1 cut(s)	345
EcoT14I	CCWWGG	3 cut(s)	77, 444, 531
EcoT22I	ATGCAT	1 cut(s)	472
EcoT38I	GRGCYC	2 cut(s)	411, 564
ErhI	CCWWGG	3 cut(s)	77, 444, 531
FaeI	CATG	3 cut(s)	28, 390, 620
FaqI	GGGAC	1 cut(s)	474
FatI	CATG	3 cut(s)	24, 386, 616
FriOI	GRGCYC	2 cut(s)	411, 564
FspBI	CTAG	4 cut(s)	38, 164, 215, 279
HaeIII	GGCC	1 cut(s)	76
HapII	CCGG	1 cut(s)	123
HgaI	GACGC	1 cut(s)	366
Hin1II	CATG	3 cut(s)	28, 390, 620
HinfI	GANTC	4 cut(s)	29, 160, 500, 577
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	2 cut(s)	112, 581
Hpy188I	TCNGA	1 cut(s)	365
Hpy188III	TCNNGA	6 cut(s)	33, 88, 164, 182, 371, 617
HpyCH4III	ACNGT	1 cut(s)	205
HpyCH4IV	ACGT	1 cut(s)	527
HpyCH4V	TGCA	3 cut(s)	128, 386, 470
HpyF10VI	GCNNNNNNNGC	1 cut(s)	383
HpyF3I	CTNAG	2 cut(s)	601, 624
HpySE526I	ACGT	1 cut(s)	527
Hsp92II	CATG	3 cut(s)	28, 390, 620
Kzo9I	GATC	2 cut(s)	291, 355
LpnPI	CCDG	7 cut(s)	18, 47, 101, 136, 157, 209, 588
LweI	GCATC	2 cut(s)	364, 457
MaeI	CTAG	4 cut(s)	38, 164, 215, 279
MaeII	ACGT	1 cut(s)	527
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	2 cut(s)	293, 357
MboI	GATC	2 cut(s)	291, 355
MboII	GAAGA	1 cut(s)	124
MfeI	CAATTG	1 cut(s)	549
MhlI	GDGCHC	4 cut(s)	171, 212, 411, 564
MluCI	AATT	4 cut(s)	262, 366, 391, 549
MlyI	GAGTC	1 cut(s)	509
MnlI	CCTC	3 cut(s)	305, 319, 602
Mph1103I	ATGCAT	1 cut(s)	472
MroXI	GAANNNNTTC	1 cut(s)	581
MseI	TTAA	3 cut(s)	177, 402, 473
MslI	CAYNNNNRTG	1 cut(s)	385
MspA1I	CMGCKG	1 cut(s)	310
MspI	CCGG	1 cut(s)	123
MunI	CAATTG	1 cut(s)	549
Mva1269I	GAATGC	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	383
NdeII	GATC	2 cut(s)	291, 355
NlaIII	CATG	3 cut(s)	28, 390, 620
NmuCI	GTSAC	1 cut(s)	118
NsiI	ATGCAT	1 cut(s)	472
PagI	TCATGA	1 cut(s)	616
PceI	AGGCCT	1 cut(s)	76
PctI	GAATGC	1 cut(s)	128
PdmI	GAANNNNTTC	1 cut(s)	581
PfeI	GAWTC	3 cut(s)	29, 160, 577
PinAI	ACCGGT	1 cut(s)	122
PleI	GAGTC	1 cut(s)	508
PpsI	GAGTC	1 cut(s)	508
PshBI	ATTAAT	2 cut(s)	177, 473
Psp124BI	GAGCTC	1 cut(s)	411
PvuII	CAGCTG	1 cut(s)	310
RseI	CAYNNNNRTG	1 cut(s)	385
SacI	GAGCTC	1 cut(s)	411
SaqAI	TTAA	3 cut(s)	177, 402, 473
Sau3AI	GATC	2 cut(s)	291, 355
SchI	GAGTC	1 cut(s)	509
SduI	GDGCHC	4 cut(s)	171, 212, 411, 564
SfaNI	GCATC	2 cut(s)	364, 457
SgrAI	CRCCGGYG	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	385
SpeI	ACTAGT	1 cut(s)	37
Sse9I	AATT	4 cut(s)	262, 366, 391, 549
SseBI	AGGCCT	1 cut(s)	76
SspMI	CTAG	4 cut(s)	38, 164, 215, 279
SstI	GAGCTC	1 cut(s)	411
StuI	AGGCCT	1 cut(s)	76
StyI	CCWWGG	3 cut(s)	77, 444, 531
TaaI	ACNGT	1 cut(s)	205
TaiI	ACGT	1 cut(s)	530
TaqI	TCGA	2 cut(s)	266, 290
TasI	AATT	4 cut(s)	262, 366, 391, 549
TfiI	GAWTC	3 cut(s)	29, 160, 577
Tru1I	TTAA	3 cut(s)	177, 402, 473
Tru9I	TTAA	3 cut(s)	177, 402, 473
TscAI	CASTG	1 cut(s)	208
TseFI	GTSAC	1 cut(s)	118
Tsp45I	GTSAC	1 cut(s)	118
TspGWI	ACGGA	2 cut(s)	179, 334
TspRI	CASTG	1 cut(s)	208
VspI	ATTAAT	2 cut(s)	177, 473
XapI	RAATTY	1 cut(s)	366
XbaI	TCTAGA	1 cut(s)	163
XmnI	GAANNNNTTC	1 cut(s)	581
XspI	CTAG	4 cut(s)	38, 164, 215, 279
Zsp2I	ATGCAT	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.