RNA recognition motif
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0392441 |
| rosa_multiflora | Rmu_sc0004465.1_g000026 Rmu_sc0006576.1_g000023 Rmu_sc0007753.1_g000018 |
| rosa_roxburghii | Rroxscaffold_1G00009700 Rroxscaffold_2G00130700 Rroxscaffold_4G00277550 Rroxscaffold_4G00309110 Rroxscaffold_4G00310040 |
| rosa_samantha | Rh1DG085900 Rh1DG285100 Rh4AG080900 Rh4DG098600 Rh5BG267100 Rh5DG221200 Rh5DG273700 Rh5DG512300 Rh6AG030700 Rh6BG476200 Rh6CG512300 Rh6CG523800 Rh7AG262200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 158 |
| AcoI | YGGCCR | 1 cut(s) | 9 |
| AgsI | TTSAA | 3 cut(s) | 62, 293, 325 |
| AluBI | AGCT | 3 cut(s) | 137, 319, 339 |
| AluI | AGCT | 3 cut(s) | 137, 319, 339 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 149 |
| AoxI | GGCC | 1 cut(s) | 9 |
| ApeKI | GCWGC | 1 cut(s) | 155 |
| AseI | ATTAAT | 1 cut(s) | 212 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 320 |
| AsuHPI | GGTGA | 1 cut(s) | 320 |
| BanII | GRGCYC | 1 cut(s) | 303 |
| BbvI | GCAGC | 1 cut(s) | 142 |
| BfaI | CTAG | 2 cut(s) | 98, 134 |
| BisI | GCNGC | 1 cut(s) | 156 |
| BlsI | GCNGC | 1 cut(s) | 157 |
| BmsI | GCATC | 3 cut(s) | 24, 92, 196 |
| BsaJI | CCNNGG | 2 cut(s) | 183, 270 |
| Bse118I | RCCGGY | 1 cut(s) | 11 |
| BseDI | CCNNGG | 2 cut(s) | 183, 270 |
| BseGI | GGATG | 2 cut(s) | 15, 107 |
| BseX3I | CGGCCG | 1 cut(s) | 9 |
| BseXI | GCAGC | 1 cut(s) | 142 |
| Bsh1285I | CGRYCG | 1 cut(s) | 12 |
| BshFI | GGCC | 1 cut(s) | 11 |
| BsiEI | CGRYCG | 1 cut(s) | 12 |
| BsiSI | CCGG | 1 cut(s) | 12 |
| BslFI | GGGAC | 1 cut(s) | 213 |
| BsmFI | GGGAC | 1 cut(s) | 213 |
| BsnI | GGCC | 1 cut(s) | 11 |
| Bsp1286I | GDGCHC | 1 cut(s) | 303 |
| BspACI | CCGC | 1 cut(s) | 158 |
| BspANI | GGCC | 1 cut(s) | 11 |
| BsrFI | RCCGGY | 1 cut(s) | 11 |
| BssAI | RCCGGY | 1 cut(s) | 11 |
| BssECI | CCNNGG | 2 cut(s) | 183, 270 |
| BssT1I | CCWWGG | 2 cut(s) | 183, 270 |
| Bst4CI | ACNGT | 1 cut(s) | 151 |
| BstC8I | GCNNGC | 2 cut(s) | 13, 107 |
| BstF5I | GGATG | 2 cut(s) | 15, 107 |
| BstMCI | CGRYCG | 1 cut(s) | 12 |
| BstV1I | GCAGC | 1 cut(s) | 142 |
| BstZI | CGGCCG | 1 cut(s) | 9 |
| BsuRI | GGCC | 1 cut(s) | 11 |
| BtsCI | GGATG | 2 cut(s) | 15, 107 |
| Cac8I | GCNNGC | 2 cut(s) | 13, 107 |
| CaiI | CAGNNNCTG | 1 cut(s) | 149 |
| Cfr10I | RCCGGY | 1 cut(s) | 11 |
| CviJI | RGCY | 8 cut(s) | 11, 39, 97, 109, 137, 301, 319, 339 |
| CviKI_1 | RGCY | 8 cut(s) | 11, 39, 97, 109, 137, 301, 319, 339 |
| EaeI | YGGCCR | 1 cut(s) | 9 |
| EagI | CGGCCG | 1 cut(s) | 9 |
| EclXI | CGGCCG | 1 cut(s) | 9 |
| Eco130I | CCWWGG | 2 cut(s) | 183, 270 |
| Eco24I | GRGCYC | 1 cut(s) | 303 |
| Eco52I | CGGCCG | 1 cut(s) | 9 |
| EcoT14I | CCWWGG | 2 cut(s) | 183, 270 |
| EcoT22I | ATGCAT | 1 cut(s) | 211 |
| EcoT38I | GRGCYC | 1 cut(s) | 303 |
| ErhI | CCWWGG | 2 cut(s) | 183, 270 |
| FaiI | YATR | 6 cut(s) | 48, 67, 69, 192, 279, 297 |
| FaqI | GGGAC | 1 cut(s) | 213 |
| Fnu4HI | GCNGC | 1 cut(s) | 156 |
| FokI | GGATG | 2 cut(s) | 2, 114 |
| FriOI | GRGCYC | 1 cut(s) | 303 |
| Fsp4HI | GCNGC | 1 cut(s) | 156 |
| FspBI | CTAG | 2 cut(s) | 98, 134 |
| GluI | GCNGC | 1 cut(s) | 156 |
| HaeIII | GGCC | 1 cut(s) | 11 |
| HapII | CCGG | 1 cut(s) | 12 |
| HindIII | AAGCTT | 1 cut(s) | 317 |
| HpaII | CCGG | 1 cut(s) | 12 |
| HphI | GGTGA | 1 cut(s) | 320 |
| HpyCH4III | ACNGT | 1 cut(s) | 151 |
| HpyCH4IV | ACGT | 1 cut(s) | 266 |
| HpyCH4V | TGCA | 2 cut(s) | 105, 209 |
| HpySE526I | ACGT | 1 cut(s) | 266 |
| KroI | GCCGGC | 1 cut(s) | 11 |
| KroNI | GCCGGC | 1 cut(s) | 13 |
| LpnPI | CCDG | 5 cut(s) | 21, 25, 91, 125, 182 |
| Lsp1109I | GCAGC | 1 cut(s) | 142 |
| LweI | GCATC | 3 cut(s) | 24, 92, 196 |
| MaeI | CTAG | 2 cut(s) | 98, 134 |
| MaeII | ACGT | 1 cut(s) | 266 |
| MaeIII | GTNAC | 1 cut(s) | 145 |
| MfeI | CAATTG | 1 cut(s) | 288 |
| MhlI | GDGCHC | 1 cut(s) | 303 |
| MluCI | AATT | 1 cut(s) | 288 |
| MnlI | CCTC | 3 cut(s) | 67, 87, 341 |
| Mph1103I | ATGCAT | 1 cut(s) | 211 |
| MroNI | GCCGGC | 1 cut(s) | 11 |
| MroXI | GAANNNNTTC | 1 cut(s) | 320 |
| MseI | TTAA | 1 cut(s) | 212 |
| MspI | CCGG | 1 cut(s) | 12 |
| MunI | CAATTG | 1 cut(s) | 288 |
| NaeI | GCCGGC | 1 cut(s) | 13 |
| NgoMIV | GCCGGC | 1 cut(s) | 11 |
| NsiI | ATGCAT | 1 cut(s) | 211 |
| PdiI | GCCGGC | 1 cut(s) | 13 |
| PdmI | GAANNNNTTC | 1 cut(s) | 320 |
| PkrI | GCNGC | 1 cut(s) | 157 |
| PshBI | ATTAAT | 1 cut(s) | 212 |
| PstNI | CAGNNNCTG | 1 cut(s) | 149 |
| SaqAI | TTAA | 1 cut(s) | 212 |
| SatI | GCNGC | 1 cut(s) | 156 |
| SduI | GDGCHC | 1 cut(s) | 303 |
| SetI | ASST | 7 cut(s) | 78, 139, 269, 276, 321, 333, 341 |
| SfaNI | GCATC | 3 cut(s) | 24, 92, 196 |
| Sse9I | AATT | 1 cut(s) | 288 |
| SsiI | CCGC | 1 cut(s) | 158 |
| SspMI | CTAG | 2 cut(s) | 98, 134 |
| StyI | CCWWGG | 2 cut(s) | 183, 270 |
| TaaI | ACNGT | 1 cut(s) | 151 |
| TaiI | ACGT | 1 cut(s) | 269 |
| TasI | AATT | 1 cut(s) | 288 |
| Tru1I | TTAA | 1 cut(s) | 212 |
| Tru9I | TTAA | 1 cut(s) | 212 |
| TseI | GCWGC | 1 cut(s) | 155 |
| TspDTI | ATGAA | 1 cut(s) | 117 |
| VspI | ATTAAT | 1 cut(s) | 212 |
| XmnI | GAANNNNTTC | 1 cut(s) | 320 |
| XspI | CTAG | 2 cut(s) | 98, 134 |
| Zsp2I | ATGCAT | 1 cut(s) | 211 |