RNA recognition motif
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0392441 |
| rosa_multiflora | Rmu_sc0004465.1_g000026 Rmu_sc0006576.1_g000023 Rmu_sc0007753.1_g000018 |
| rosa_roxburghii | Rroxscaffold_1G00009700 Rroxscaffold_2G00130700 Rroxscaffold_4G00277550 Rroxscaffold_4G00309110 Rroxscaffold_4G00310040 |
| rosa_samantha | Rh1DG085900 Rh1DG285100 Rh4AG080900 Rh4DG098600 Rh5BG267100 Rh5DG221200 Rh5DG273700 Rh5DG512300 Rh6AG030700 Rh6BG476200 Rh6CG512300 Rh6CG523800 Rh7AG262200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 134 |
| AcuI | CTGAAG | 1 cut(s) | 50 |
| AgsI | TTSAA | 3 cut(s) | 38, 272, 304 |
| AluBI | AGCT | 3 cut(s) | 113, 298, 318 |
| AluI | AGCT | 3 cut(s) | 113, 298, 318 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 125 |
| ApeKI | GCWGC | 1 cut(s) | 131 |
| AseI | ATTAAT | 1 cut(s) | 191 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 299 |
| BanII | GRGCYC | 1 cut(s) | 282 |
| BbvI | GCAGC | 1 cut(s) | 118 |
| BccI | CCATC | 1 cut(s) | 231 |
| BfaI | CTAG | 2 cut(s) | 74, 110 |
| BisI | GCNGC | 1 cut(s) | 132 |
| BlsI | GCNGC | 1 cut(s) | 133 |
| BmsI | GCATC | 2 cut(s) | 68, 175 |
| BsaJI | CCNNGG | 2 cut(s) | 162, 249 |
| BseDI | CCNNGG | 2 cut(s) | 162, 249 |
| BseGI | GGATG | 1 cut(s) | 83 |
| BseXI | GCAGC | 1 cut(s) | 118 |
| BslFI | GGGAC | 2 cut(s) | 192, 205 |
| BsmFI | GGGAC | 2 cut(s) | 192, 205 |
| Bsp1286I | GDGCHC | 1 cut(s) | 282 |
| BspACI | CCGC | 1 cut(s) | 134 |
| BssECI | CCNNGG | 2 cut(s) | 162, 249 |
| BssT1I | CCWWGG | 2 cut(s) | 162, 249 |
| Bst4CI | ACNGT | 1 cut(s) | 127 |
| BstC8I | GCNNGC | 1 cut(s) | 83 |
| BstF5I | GGATG | 1 cut(s) | 83 |
| BstV1I | GCAGC | 1 cut(s) | 118 |
| BtsCI | GGATG | 1 cut(s) | 83 |
| Cac8I | GCNNGC | 1 cut(s) | 83 |
| CaiI | CAGNNNCTG | 1 cut(s) | 125 |
| CviJI | RGCY | 6 cut(s) | 73, 85, 113, 280, 298, 318 |
| CviKI_1 | RGCY | 6 cut(s) | 73, 85, 113, 280, 298, 318 |
| Eco130I | CCWWGG | 2 cut(s) | 162, 249 |
| Eco24I | GRGCYC | 1 cut(s) | 282 |
| Eco57I | CTGAAG | 1 cut(s) | 50 |
| EcoT14I | CCWWGG | 2 cut(s) | 162, 249 |
| EcoT22I | ATGCAT | 1 cut(s) | 190 |
| EcoT38I | GRGCYC | 1 cut(s) | 282 |
| ErhI | CCWWGG | 2 cut(s) | 162, 249 |
| FaiI | YATR | 5 cut(s) | 43, 45, 171, 258, 276 |
| FaqI | GGGAC | 2 cut(s) | 192, 205 |
| Fnu4HI | GCNGC | 1 cut(s) | 132 |
| FokI | GGATG | 1 cut(s) | 90 |
| FriOI | GRGCYC | 1 cut(s) | 282 |
| Fsp4HI | GCNGC | 1 cut(s) | 132 |
| FspBI | CTAG | 2 cut(s) | 74, 110 |
| GluI | GCNGC | 1 cut(s) | 132 |
| HindIII | AAGCTT | 1 cut(s) | 296 |
| HinfI | GANTC | 1 cut(s) | 218 |
| HpyAV | CCTTC | 1 cut(s) | 25 |
| HpyCH4III | ACNGT | 1 cut(s) | 127 |
| HpyCH4IV | ACGT | 1 cut(s) | 245 |
| HpyCH4V | TGCA | 2 cut(s) | 81, 188 |
| HpySE526I | ACGT | 1 cut(s) | 245 |
| LpnPI | CCDG | 4 cut(s) | 41, 67, 101, 161 |
| Lsp1109I | GCAGC | 1 cut(s) | 118 |
| LweI | GCATC | 2 cut(s) | 68, 175 |
| MaeI | CTAG | 2 cut(s) | 74, 110 |
| MaeII | ACGT | 1 cut(s) | 245 |
| MaeIII | GTNAC | 1 cut(s) | 121 |
| MboII | GAAGA | 1 cut(s) | 10 |
| MfeI | CAATTG | 1 cut(s) | 267 |
| MhlI | GDGCHC | 1 cut(s) | 282 |
| MluCI | AATT | 3 cut(s) | 147, 267, 304 |
| MlyI | GAGTC | 1 cut(s) | 227 |
| MnlI | CCTC | 3 cut(s) | 43, 63, 320 |
| Mph1103I | ATGCAT | 1 cut(s) | 190 |
| MroXI | GAANNNNTTC | 1 cut(s) | 299 |
| MseI | TTAA | 1 cut(s) | 191 |
| MunI | CAATTG | 1 cut(s) | 267 |
| NsiI | ATGCAT | 1 cut(s) | 190 |
| PdmI | GAANNNNTTC | 1 cut(s) | 299 |
| PkrI | GCNGC | 1 cut(s) | 133 |
| PleI | GAGTC | 1 cut(s) | 226 |
| PpsI | GAGTC | 1 cut(s) | 226 |
| PshBI | ATTAAT | 1 cut(s) | 191 |
| PstNI | CAGNNNCTG | 1 cut(s) | 125 |
| SaqAI | TTAA | 1 cut(s) | 191 |
| SatI | GCNGC | 1 cut(s) | 132 |
| SchI | GAGTC | 1 cut(s) | 227 |
| SduI | GDGCHC | 1 cut(s) | 282 |
| SetI | ASST | 8 cut(s) | 36, 54, 115, 248, 255, 300, 312, 320 |
| SfaNI | GCATC | 2 cut(s) | 68, 175 |
| Sse9I | AATT | 3 cut(s) | 147, 267, 304 |
| SsiI | CCGC | 1 cut(s) | 134 |
| SspMI | CTAG | 2 cut(s) | 74, 110 |
| StyI | CCWWGG | 2 cut(s) | 162, 249 |
| TaaI | ACNGT | 1 cut(s) | 127 |
| TaiI | ACGT | 1 cut(s) | 248 |
| TasI | AATT | 3 cut(s) | 147, 267, 304 |
| Tru1I | TTAA | 1 cut(s) | 191 |
| Tru9I | TTAA | 1 cut(s) | 191 |
| TseI | GCWGC | 1 cut(s) | 131 |
| TspDTI | ATGAA | 2 cut(s) | 17, 93 |
| VspI | ATTAAT | 1 cut(s) | 191 |
| XmnI | GAANNNNTTC | 1 cut(s) | 299 |
| XspI | CTAG | 2 cut(s) | 74, 110 |
| Zsp2I | ATGCAT | 1 cut(s) | 190 |