RNA recognition motif
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0392441 |
| rosa_multiflora | Rmu_sc0004465.1_g000026 Rmu_sc0006576.1_g000023 Rmu_sc0007753.1_g000018 |
| rosa_roxburghii | Rroxscaffold_1G00009700 Rroxscaffold_2G00130700 Rroxscaffold_4G00277550 Rroxscaffold_4G00309110 Rroxscaffold_4G00310040 |
| rosa_samantha | Rh1DG085900 Rh1DG285100 Rh4AG080900 Rh4DG098600 Rh5BG267100 Rh5DG221200 Rh5DG273700 Rh5DG512300 Rh6AG030700 Rh6BG476200 Rh6CG512300 Rh6CG523800 Rh7AG262200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 68 |
| AgsI | TTSAA | 2 cut(s) | 203, 234 |
| AluBI | AGCT | 3 cut(s) | 47, 228, 248 |
| AluI | AGCT | 3 cut(s) | 47, 228, 248 |
| ApeKI | GCWGC | 3 cut(s) | 65, 167, 170 |
| AseI | ATTAAT | 1 cut(s) | 122 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 229 |
| AsuHPI | GGTGA | 1 cut(s) | 229 |
| BbvI | GCAGC | 3 cut(s) | 52, 154, 157 |
| BfaI | CTAG | 1 cut(s) | 44 |
| BisI | GCNGC | 3 cut(s) | 66, 168, 171 |
| BlsI | GCNGC | 3 cut(s) | 67, 169, 172 |
| BmsI | GCATC | 1 cut(s) | 106 |
| BsaJI | CCNNGG | 2 cut(s) | 93, 180 |
| BseDI | CCNNGG | 2 cut(s) | 93, 180 |
| BseGI | GGATG | 1 cut(s) | 176 |
| BseXI | GCAGC | 3 cut(s) | 52, 154, 157 |
| BslFI | GGGAC | 1 cut(s) | 123 |
| BsmFI | GGGAC | 1 cut(s) | 123 |
| BspACI | CCGC | 1 cut(s) | 68 |
| BssECI | CCNNGG | 2 cut(s) | 93, 180 |
| BssT1I | CCWWGG | 2 cut(s) | 93, 180 |
| BstDEI | CTNAG | 1 cut(s) | 249 |
| BstF5I | GGATG | 1 cut(s) | 176 |
| BstV1I | GCAGC | 3 cut(s) | 52, 154, 157 |
| BtsCI | GGATG | 1 cut(s) | 176 |
| CviJI | RGCY | 6 cut(s) | 19, 47, 167, 210, 228, 248 |
| CviKI_1 | RGCY | 6 cut(s) | 19, 47, 167, 210, 228, 248 |
| DdeI | CTNAG | 1 cut(s) | 249 |
| Eco130I | CCWWGG | 2 cut(s) | 93, 180 |
| EcoT14I | CCWWGG | 2 cut(s) | 93, 180 |
| EcoT22I | ATGCAT | 1 cut(s) | 121 |
| ErhI | CCWWGG | 2 cut(s) | 93, 180 |
| FaiI | YATR | 4 cut(s) | 102, 189, 207, 257 |
| FaqI | GGGAC | 1 cut(s) | 123 |
| Fnu4HI | GCNGC | 3 cut(s) | 66, 168, 171 |
| FokI | GGATG | 1 cut(s) | 163 |
| Fsp4HI | GCNGC | 3 cut(s) | 66, 168, 171 |
| FspBI | CTAG | 1 cut(s) | 44 |
| GluI | GCNGC | 3 cut(s) | 66, 168, 171 |
| HindIII | AAGCTT | 1 cut(s) | 226 |
| HinfI | GANTC | 1 cut(s) | 149 |
| HphI | GGTGA | 1 cut(s) | 229 |
| Hpy188I | TCNGA | 1 cut(s) | 252 |
| HpyCH4V | TGCA | 2 cut(s) | 119, 173 |
| HpyF3I | CTNAG | 1 cut(s) | 249 |
| LpnPI | CCDG | 2 cut(s) | 35, 92 |
| Lsp1109I | GCAGC | 3 cut(s) | 52, 154, 157 |
| LweI | GCATC | 1 cut(s) | 106 |
| MaeI | CTAG | 1 cut(s) | 44 |
| MaeIII | GTNAC | 1 cut(s) | 4 |
| MfeI | CAATTG | 1 cut(s) | 198 |
| MluCI | AATT | 2 cut(s) | 57, 198 |
| MlyI | GAGTC | 1 cut(s) | 158 |
| MnlI | CCTC | 1 cut(s) | 250 |
| Mph1103I | ATGCAT | 1 cut(s) | 121 |
| MroXI | GAANNNNTTC | 1 cut(s) | 229 |
| MseI | TTAA | 1 cut(s) | 122 |
| MunI | CAATTG | 1 cut(s) | 198 |
| NsiI | ATGCAT | 1 cut(s) | 121 |
| PdmI | GAANNNNTTC | 1 cut(s) | 229 |
| PkrI | GCNGC | 3 cut(s) | 67, 169, 172 |
| PleI | GAGTC | 1 cut(s) | 157 |
| PpsI | GAGTC | 1 cut(s) | 157 |
| PshBI | ATTAAT | 1 cut(s) | 122 |
| SaqAI | TTAA | 1 cut(s) | 122 |
| SatI | GCNGC | 3 cut(s) | 66, 168, 171 |
| SchI | GAGTC | 1 cut(s) | 158 |
| SetI | ASST | 5 cut(s) | 49, 186, 230, 242, 250 |
| SfaNI | GCATC | 1 cut(s) | 106 |
| Sse9I | AATT | 2 cut(s) | 57, 198 |
| SsiI | CCGC | 1 cut(s) | 68 |
| SspMI | CTAG | 1 cut(s) | 44 |
| StyI | CCWWGG | 2 cut(s) | 93, 180 |
| TasI | AATT | 2 cut(s) | 57, 198 |
| Tru1I | TTAA | 1 cut(s) | 122 |
| Tru9I | TTAA | 1 cut(s) | 122 |
| TseI | GCWGC | 3 cut(s) | 65, 167, 170 |
| TspDTI | ATGAA | 1 cut(s) | 27 |
| VspI | ATTAAT | 1 cut(s) | 122 |
| XmnI | GAANNNNTTC | 1 cut(s) | 229 |
| XspI | CTAG | 1 cut(s) | 44 |
| Zsp2I | ATGCAT | 1 cut(s) | 121 |