RNA recognition motif
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0392441 |
| rosa_multiflora | Rmu_sc0004465.1_g000026 Rmu_sc0006576.1_g000023 Rmu_sc0007753.1_g000018 |
| rosa_roxburghii | Rroxscaffold_1G00009700 Rroxscaffold_2G00130700 Rroxscaffold_4G00277550 Rroxscaffold_4G00309110 Rroxscaffold_4G00310040 |
| rosa_samantha | Rh1DG085900 Rh1DG285100 Rh4AG080900 Rh4DG098600 Rh5BG267100 Rh5DG221200 Rh5DG273700 Rh5DG512300 Rh6AG030700 Rh6BG476200 Rh6CG512300 Rh6CG523800 Rh7AG262200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 68 |
| AgsI | TTSAA | 2 cut(s) | 188, 220 |
| AluBI | AGCT | 3 cut(s) | 47, 214, 234 |
| AluI | AGCT | 3 cut(s) | 47, 214, 234 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 59 |
| ApeKI | GCWGC | 1 cut(s) | 65 |
| AseI | ATTAAT | 2 cut(s) | 105, 128 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 215 |
| AsuHPI | GGTGA | 1 cut(s) | 215 |
| BanII | GRGCYC | 1 cut(s) | 198 |
| BbvI | GCAGC | 1 cut(s) | 52 |
| BfaI | CTAG | 2 cut(s) | 8, 44 |
| BisI | GCNGC | 1 cut(s) | 66 |
| BlsI | GCNGC | 1 cut(s) | 67 |
| BmsI | GCATC | 2 cut(s) | 2, 112 |
| BsaJI | CCNNGG | 2 cut(s) | 93, 165 |
| BseDI | CCNNGG | 2 cut(s) | 93, 165 |
| BseGI | GGATG | 1 cut(s) | 17 |
| BseXI | GCAGC | 1 cut(s) | 52 |
| BslFI | GGGAC | 1 cut(s) | 129 |
| BsmFI | GGGAC | 1 cut(s) | 129 |
| Bsp1286I | GDGCHC | 1 cut(s) | 198 |
| BspACI | CCGC | 1 cut(s) | 68 |
| BssECI | CCNNGG | 2 cut(s) | 93, 165 |
| BssT1I | CCWWGG | 2 cut(s) | 93, 165 |
| Bst4CI | ACNGT | 1 cut(s) | 61 |
| BstC8I | GCNNGC | 1 cut(s) | 17 |
| BstF5I | GGATG | 1 cut(s) | 17 |
| BstV1I | GCAGC | 1 cut(s) | 52 |
| BtsCI | GGATG | 1 cut(s) | 17 |
| Cac8I | GCNNGC | 1 cut(s) | 17 |
| CaiI | CAGNNNCTG | 1 cut(s) | 59 |
| CviJI | RGCY | 6 cut(s) | 7, 19, 47, 196, 214, 234 |
| CviKI_1 | RGCY | 6 cut(s) | 7, 19, 47, 196, 214, 234 |
| Eco130I | CCWWGG | 2 cut(s) | 93, 165 |
| Eco24I | GRGCYC | 1 cut(s) | 198 |
| EcoT14I | CCWWGG | 2 cut(s) | 93, 165 |
| EcoT22I | ATGCAT | 1 cut(s) | 127 |
| EcoT38I | GRGCYC | 1 cut(s) | 198 |
| ErhI | CCWWGG | 2 cut(s) | 93, 165 |
| FaiI | YATR | 4 cut(s) | 102, 148, 174, 192 |
| FaqI | GGGAC | 1 cut(s) | 129 |
| Fnu4HI | GCNGC | 1 cut(s) | 66 |
| FokI | GGATG | 1 cut(s) | 24 |
| FriOI | GRGCYC | 1 cut(s) | 198 |
| Fsp4HI | GCNGC | 1 cut(s) | 66 |
| FspBI | CTAG | 2 cut(s) | 8, 44 |
| GluI | GCNGC | 1 cut(s) | 66 |
| HindIII | AAGCTT | 1 cut(s) | 212 |
| HinfI | GANTC | 1 cut(s) | 134 |
| HphI | GGTGA | 1 cut(s) | 215 |
| HpyCH4III | ACNGT | 1 cut(s) | 61 |
| HpyCH4IV | ACGT | 1 cut(s) | 161 |
| HpyCH4V | TGCA | 2 cut(s) | 15, 125 |
| HpySE526I | ACGT | 1 cut(s) | 161 |
| LpnPI | CCDG | 2 cut(s) | 35, 98 |
| Lsp1109I | GCAGC | 1 cut(s) | 52 |
| LweI | GCATC | 2 cut(s) | 2, 112 |
| MaeI | CTAG | 2 cut(s) | 8, 44 |
| MaeII | ACGT | 1 cut(s) | 161 |
| MaeIII | GTNAC | 1 cut(s) | 55 |
| MfeI | CAATTG | 1 cut(s) | 183 |
| MhlI | GDGCHC | 1 cut(s) | 198 |
| MluCI | AATT | 1 cut(s) | 183 |
| MlyI | GAGTC | 1 cut(s) | 143 |
| MnlI | CCTC | 1 cut(s) | 236 |
| Mph1103I | ATGCAT | 1 cut(s) | 127 |
| MroXI | GAANNNNTTC | 1 cut(s) | 215 |
| MseI | TTAA | 2 cut(s) | 105, 128 |
| MunI | CAATTG | 1 cut(s) | 183 |
| NsiI | ATGCAT | 1 cut(s) | 127 |
| PdmI | GAANNNNTTC | 1 cut(s) | 215 |
| PkrI | GCNGC | 1 cut(s) | 67 |
| PleI | GAGTC | 1 cut(s) | 142 |
| PpsI | GAGTC | 1 cut(s) | 142 |
| PshBI | ATTAAT | 2 cut(s) | 105, 128 |
| PstNI | CAGNNNCTG | 1 cut(s) | 59 |
| SaqAI | TTAA | 2 cut(s) | 105, 128 |
| SatI | GCNGC | 1 cut(s) | 66 |
| SchI | GAGTC | 1 cut(s) | 143 |
| SduI | GDGCHC | 1 cut(s) | 198 |
| SetI | ASST | 6 cut(s) | 49, 164, 171, 216, 228, 236 |
| SfaNI | GCATC | 2 cut(s) | 2, 112 |
| Sse9I | AATT | 1 cut(s) | 183 |
| SsiI | CCGC | 1 cut(s) | 68 |
| SspMI | CTAG | 2 cut(s) | 8, 44 |
| StyI | CCWWGG | 2 cut(s) | 93, 165 |
| TaaI | ACNGT | 1 cut(s) | 61 |
| TaiI | ACGT | 1 cut(s) | 164 |
| TaqI | TCGA | 1 cut(s) | 132 |
| TasI | AATT | 1 cut(s) | 183 |
| Tru1I | TTAA | 2 cut(s) | 105, 128 |
| Tru9I | TTAA | 2 cut(s) | 105, 128 |
| TseI | GCWGC | 1 cut(s) | 65 |
| TspDTI | ATGAA | 1 cut(s) | 27 |
| VspI | ATTAAT | 2 cut(s) | 105, 128 |
| XmnI | GAANNNNTTC | 1 cut(s) | 215 |
| XspI | CTAG | 2 cut(s) | 8, 44 |
| Zsp2I | ATGCAT | 1 cut(s) | 127 |