Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0009738

Physical Location & Seq

Genomic Coordinates Reverse (-)

12217187 .. 12220261

Gene Structure 3075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00009700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 483 bp

ATGGATCCAAATTATCAAGGTATTAAAATACCGCAAGCAACTAGTAAGCTCTTGCACCAAATGCATGGGAGAACGTTAAGCAATTCATCTCCCTCAACGCGACTTCGCACTCAGATTTTCACAGATTTTGATTTTCGATGCCTCTTCTCTGGAACTCTCTTCTTCGATGAGTTCTTTACGCCGGCTGCTGTGGAGGTTGGCGGCGGAACGATGAAGGTTGGCCTAGTGAAAAGAAAGACGCCTTCAGAACTGAGAGTTGAACTATATGGAGAGGTCTTGGGAAACAGGATGAGGCTAGGATGCAGGCTATTCACGCAAGTCAGTTCATTTCTAGCTCTGGCAGTAACTGTTGCTGCGGAAGTTGTCAAAACAATGGTTGCCAAGGGATGTGTTCTGGGACAAGATGCATTAATAAGGGGATTTGTCAAAACAATGAGTCCTATCAAGTATCGGCTGCTACAACGTCCAAGGTTTATGAGTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

160

Amino Acids

17.87

Weight (kDa)

10.15

Isoelectric Point (pI)

31.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009738)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0392441
rosa_multiflora	Rmu_sc0004465.1_g000026 Rmu_sc0006576.1_g000023 Rmu_sc0007753.1_g000018
rosa_roxburghii	Rroxscaffold_1G00009700 Rroxscaffold_2G00130700 Rroxscaffold_4G00277550 Rroxscaffold_4G00309110 Rroxscaffold_4G00310040
rosa_samantha	Rh1DG085900 Rh1DG285100 Rh4AG080900 Rh4DG098600 Rh5BG267100 Rh5DG221200 Rh5DG273700 Rh5DG512300 Rh6AG030700 Rh6BG476200 Rh6CG512300 Rh6CG523800 Rh7AG262200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	100
AciI	CCGC	4 cut(s)	32, 201, 204, 356
AclI	AACGTT	1 cut(s)	74
AclWI	GGATC	1 cut(s)	12
AcuI	CTGAAG	1 cut(s)	228
AcyI	GRCGYC	1 cut(s)	239
AgsI	TTSAA	1 cut(s)	260
AhlI	ACTAGT	1 cut(s)	41
AluBI	AGCT	2 cut(s)	49, 335
AluI	AGCT	2 cut(s)	49, 335
AlwI	GGATC	1 cut(s)	12
AlwNI	CAGNNNCTG	1 cut(s)	347
AoxI	GGCC	1 cut(s)	220
ApeKI	GCWGC	3 cut(s)	185, 353, 454
AseI	ATTAAT	1 cut(s)	410
BamHI	GGATCC	1 cut(s)	4
BbvI	GCAGC	3 cut(s)	172, 340, 441
BcuI	ACTAGT	1 cut(s)	41
BfaI	CTAG	4 cut(s)	42, 224, 296, 332
BisI	GCNGC	4 cut(s)	186, 202, 354, 455
BlsI	GCNGC	4 cut(s)	187, 203, 355, 456
BmiI	GGNNCC	1 cut(s)	6
BmsI	GCATC	3 cut(s)	128, 290, 394
BsaHI	GRCGYC	1 cut(s)	239
BsaJI	CCNNGG	2 cut(s)	381, 467
Bse118I	RCCGGY	1 cut(s)	181
BseDI	CCNNGG	2 cut(s)	381, 467
BseGI	GGATG	3 cut(s)	294, 305, 392
BseMII	CTCAG	2 cut(s)	125, 242
BseXI	GCAGC	3 cut(s)	172, 340, 441
Bsh1236I	CGCG	1 cut(s)	100
BshFI	GGCC	1 cut(s)	222
BsiSI	CCGG	1 cut(s)	182
BslFI	GGGAC	1 cut(s)	411
BsmFI	GGGAC	1 cut(s)	411
BsnI	GGCC	1 cut(s)	222
Bsp143I	GATC	1 cut(s)	4
BspACI	CCGC	4 cut(s)	32, 201, 204, 356
BspANI	GGCC	1 cut(s)	222
BspCNI	CTCAG	2 cut(s)	124, 243
BspFNI	CGCG	1 cut(s)	100
BspLI	GGNNCC	1 cut(s)	6
BspPI	GGATC	1 cut(s)	12
BsrFI	RCCGGY	1 cut(s)	181
BssAI	RCCGGY	1 cut(s)	181
BssECI	CCNNGG	2 cut(s)	381, 467
BssMI	GATC	1 cut(s)	4
BssNI	GRCGYC	1 cut(s)	239
BssT1I	CCWWGG	2 cut(s)	381, 467
Bst4CI	ACNGT	1 cut(s)	349
Bst6I	CTCTTC	2 cut(s)	149, 164
BstACI	GRCGYC	1 cut(s)	239
BstAPI	GCANNNNNTGC	1 cut(s)	61
BstC8I	GCNNGC	3 cut(s)	36, 183, 305
BstDEI	CTNAG	2 cut(s)	111, 251
BstF5I	GGATG	3 cut(s)	294, 305, 392
BstFNI	CGCG	1 cut(s)	100
BstKTI	GATC	1 cut(s)	7
BstMBI	GATC	1 cut(s)	4
BstMWI	GCNNNNNNNGC	2 cut(s)	61, 313
BstUI	CGCG	1 cut(s)	100
BstV1I	GCAGC	3 cut(s)	172, 340, 441
BstX2I	RGATCY	1 cut(s)	4
BstXI	CCANNNNNNTGG	1 cut(s)	65
BstYI	RGATCY	1 cut(s)	4
BsuRI	GGCC	1 cut(s)	222
BtsCI	GGATG	3 cut(s)	294, 305, 392
Cac8I	GCNNGC	3 cut(s)	36, 183, 305
CaiI	CAGNNNCTG	1 cut(s)	347
Cfr10I	RCCGGY	1 cut(s)	181
CseI	GACGC	1 cut(s)	247
CviAII	CATG	1 cut(s)	65
CviJI	RGCY	7 cut(s)	49, 185, 222, 295, 307, 335, 454
CviKI_1	RGCY	7 cut(s)	49, 185, 222, 295, 307, 335, 454
DdeI	CTNAG	2 cut(s)	111, 251
DpnI	GATC	1 cut(s)	6
DpnII	GATC	1 cut(s)	4
Eam1104I	CTCTTC	2 cut(s)	149, 164
EarI	CTCTTC	2 cut(s)	149, 164
EciI	GGCGGA	1 cut(s)	219
Eco130I	CCWWGG	2 cut(s)	381, 467
Eco57I	CTGAAG	1 cut(s)	228
EcoT14I	CCWWGG	2 cut(s)	381, 467
EcoT22I	ATGCAT	2 cut(s)	66, 409
ErhI	CCWWGG	2 cut(s)	381, 467
FaeI	CATG	1 cut(s)	68
FaiI	YATR	4 cut(s)	66, 265, 267, 476
FaqI	GGGAC	1 cut(s)	411
FatI	CATG	1 cut(s)	64
Fnu4HI	GCNGC	4 cut(s)	186, 202, 354, 455
FokI	GGATG	3 cut(s)	301, 312, 399
Fsp4HI	GCNGC	4 cut(s)	186, 202, 354, 455
FspBI	CTAG	4 cut(s)	42, 224, 296, 332
GluI	GCNGC	4 cut(s)	186, 202, 354, 455
HaeIII	GGCC	1 cut(s)	222
HapII	CCGG	1 cut(s)	182
HgaI	GACGC	1 cut(s)	247
Hin1I	GRCGYC	1 cut(s)	239
Hin1II	CATG	1 cut(s)	68
HinfI	GANTC	1 cut(s)	436
HpaII	CCGG	1 cut(s)	182
Hpy188I	TCNGA	2 cut(s)	114, 247
Hpy188III	TCNNGA	1 cut(s)	150
HpyAV	CCTTC	2 cut(s)	208, 252
HpyCH4III	ACNGT	1 cut(s)	349
HpyCH4IV	ACGT	2 cut(s)	74, 463
HpyCH4V	TGCA	4 cut(s)	55, 64, 303, 407
HpyF10VI	GCNNNNNNNGC	2 cut(s)	61, 313
HpyF3I	CTNAG	2 cut(s)	111, 251
HpySE526I	ACGT	2 cut(s)	74, 463
Hsp92I	GRCGYC	1 cut(s)	239
Hsp92II	CATG	1 cut(s)	68
KroI	GCCGGC	1 cut(s)	181
KroNI	GCCGGC	1 cut(s)	183
Kzo9I	GATC	1 cut(s)	4
LpnPI	CCDG	6 cut(s)	135, 195, 271, 289, 323, 380
Lsp1109I	GCAGC	3 cut(s)	172, 340, 441
LweI	GCATC	3 cut(s)	128, 290, 394
MaeI	CTAG	4 cut(s)	42, 224, 296, 332
MaeII	ACGT	2 cut(s)	74, 463
MaeIII	GTNAC	1 cut(s)	343
MalI	GATC	1 cut(s)	6
MboI	GATC	1 cut(s)	4
MboII	GAAGA	3 cut(s)	136, 151, 154
MflI	RGATCY	1 cut(s)	4
MluCI	AATT	2 cut(s)	10, 82
MlyI	GAGTC	1 cut(s)	445
MnlI	CCTC	5 cut(s)	103, 152, 187, 265, 285
Mph1103I	ATGCAT	2 cut(s)	66, 409
MroNI	GCCGGC	1 cut(s)	181
MseI	TTAA	3 cut(s)	24, 77, 410
MspI	CCGG	1 cut(s)	182
MvnI	CGCG	1 cut(s)	100
MwoI	GCNNNNNNNGC	2 cut(s)	61, 313
NaeI	GCCGGC	1 cut(s)	183
NdeII	GATC	1 cut(s)	4
NgoMIV	GCCGGC	1 cut(s)	181
NlaIII	CATG	1 cut(s)	68
NlaIV	GGNNCC	1 cut(s)	6
NsiI	ATGCAT	2 cut(s)	66, 409
PdiI	GCCGGC	1 cut(s)	183
PkrI	GCNGC	4 cut(s)	187, 203, 355, 456
PleI	GAGTC	1 cut(s)	444
PpsI	GAGTC	1 cut(s)	444
PshBI	ATTAAT	1 cut(s)	410
Psp1406I	AACGTT	1 cut(s)	74
PspN4I	GGNNCC	1 cut(s)	6
PstNI	CAGNNNCTG	1 cut(s)	347
PsuI	RGATCY	1 cut(s)	4
SaqAI	TTAA	3 cut(s)	24, 77, 410
SatI	GCNGC	4 cut(s)	186, 202, 354, 455
Sau3AI	GATC	1 cut(s)	4
SchI	GAGTC	1 cut(s)	445
SetI	ASST	9 cut(s)	22, 51, 77, 198, 219, 276, 337, 466, 473
SfaNI	GCATC	3 cut(s)	128, 290, 394
SpeI	ACTAGT	1 cut(s)	41
Sse9I	AATT	2 cut(s)	10, 82
SsiI	CCGC	4 cut(s)	32, 201, 204, 356
SspMI	CTAG	4 cut(s)	42, 224, 296, 332
StyI	CCWWGG	2 cut(s)	381, 467
TaaI	ACNGT	1 cut(s)	349
TaiI	ACGT	2 cut(s)	77, 466
TaqI	TCGA	2 cut(s)	136, 165
TasI	AATT	2 cut(s)	10, 82
TauI	GCSGC	1 cut(s)	204
Tru1I	TTAA	3 cut(s)	24, 77, 410
Tru9I	TTAA	3 cut(s)	24, 77, 410
TseI	GCWGC	3 cut(s)	185, 353, 454
TspDTI	ATGAA	3 cut(s)	75, 227, 315
VspI	ATTAAT	1 cut(s)	410
XspI	CTAG	4 cut(s)	42, 224, 296, 332
Zsp2I	ATGCAT	2 cut(s)	66, 409

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.