Rh6AG030700

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0009738
Physical Location & Seq
Reverse (-)
3785975 .. 3801564
15590 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG030700.1

Sequence Viewer

Length: 711 bp
ATGAATATTCTAACAGCCTCCAGTCAGCCCTCGCCGCCTGACAGCAGCCCCGCGCCCCGAGCCTGCAGCACGACCCACGCTGCTGCTGCATCCCACATCCAAGAGCAAATTGCTCTCGGCACCCAACACATTGATCTAGACACCCACCTCCACCCATCGCTACTGCCTCCCACCTGCAGATCCCAGCAGCACGCCTCCGATCTCATTGCTGCAGTGCGCTCGCTCCGGCCTCGGCCCCAATCACCGGCGCGGCCTCGTCCAAACCCACCTCCATCTTCCTCTGTCGTAAAAAGATGGGAGATAGGAACTGTATGCAAGTGTGGCACGAATACTGGCATAGGACGCACAGCTCCCTCTTTCAAGCTAATGGAGGGAATGGAAAGGGTACTAATGGTCTTGCCGACGACGAAGAGAATCCGCAAAAAGGTTGAACTATATGGAGAGGTCTTGGGAAACAAGATGAGGCTAGGATGCAGGCTATTCACACAAGTCAGTTCATTTCTAGCTCTGGCAGTAACTGTTGCTGCGGAAGTTGTCAAAACAATGGTTGCCAAGGGATATGTTCTGGGACAAGATGCATTAATCAAGGGGATTTGTCAAAACAATGAGTCCTATCAAGTATCGGTTGCTACAACGTCCAAGGTTTATGAGTTAGCAATTGAATATGGGCTCATCAAGGCAAAGAAGCTTTTCAATCACCTCAATAGCTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

236

Amino Acids

25.58

Weight (kDa)

9.75

Isoelectric Point (pI)

53.65

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 182
Acc36I ACCTGC 1 cut(s) 182
AccB1I GGYRCC 1 cut(s) 119
AccII CGCG 2 cut(s) 53, 250
AciI CCGC 5 cut(s) 35, 51, 250, 418, 527
AclWI GGATC 1 cut(s) 174
AfaI GTAC 1 cut(s) 387
AfiI CCNNNNNNNGG 2 cut(s) 244, 424
AgsI TTSAA 4 cut(s) 361, 431, 662, 694
AluBI AGCT 5 cut(s) 350, 364, 506, 688, 708
AluI AGCT 5 cut(s) 350, 364, 506, 688, 708
AlwI GGATC 1 cut(s) 174
AlwNI CAGNNNCTG 1 cut(s) 518
Ama87I CYCGRG 1 cut(s) 57
AoxI GGCC 3 cut(s) 227, 233, 251
ApeKI GCWGC 8 cut(s) 45, 66, 80, 83, 86, 187, 209, 524
AseI ATTAAT 1 cut(s) 581
Asp700I GAANNNNTTC 1 cut(s) 689
AspLEI GCGC 3 cut(s) 55, 219, 250
AspS9I GGNCC 1 cut(s) 234
AsuHPI GGTGA 2 cut(s) 234, 689
AvaI CYCGRG 1 cut(s) 57
BanI GGYRCC 1 cut(s) 119
BanII GRGCYC 1 cut(s) 672
BbvI GCAGC 8 cut(s) 57, 67, 70, 73, 78, 196, 199, 511
BccI CCATC 3 cut(s) 163, 280, 288
BcgI CGANNNNNNTGC 4 cut(s) 188, 201, 222, 235
BfaI CTAG 3 cut(s) 137, 467, 503
BfmI CTRYAG 3 cut(s) 64, 175, 210
BfuAI ACCTGC 1 cut(s) 182
BmeT110I CYCGRG 1 cut(s) 57
BmgT120I GGNCC 1 cut(s) 234
BmiI GGNNCC 2 cut(s) 121, 236
BmsI GCATC 3 cut(s) 98, 461, 565
BpmI CTGGAG 1 cut(s) 4
BsaJI CCNNGG 3 cut(s) 230, 552, 639
Bsc4I CCNNNNNNNGG 2 cut(s) 244, 424
Bse118I RCCGGY 1 cut(s) 244
Bse1I ACTGG 2 cut(s) 21, 337
Bse3DI GCAATG 1 cut(s) 204
BseDI CCNNGG 3 cut(s) 230, 552, 639
BseGI GGATG 3 cut(s) 89, 96, 476
BseLI CCNNNNNNNGG 2 cut(s) 244, 424
BseMI GCAATG 1 cut(s) 204
BseNI ACTGG 2 cut(s) 21, 337
BseXI GCAGC 8 cut(s) 57, 67, 70, 73, 78, 196, 199, 511
BseYI CCCAGC 1 cut(s) 183
Bsh1236I CGCG 2 cut(s) 53, 250
BshFI GGCC 3 cut(s) 229, 235, 253
BshNI GGYRCC 1 cut(s) 119
BsiHKCI CYCGRG 1 cut(s) 57
BsiSI CCGG 2 cut(s) 226, 245
BslFI GGGAC 1 cut(s) 582
BslI CCNNNNNNNGG 2 cut(s) 244, 424
BsmFI GGGAC 1 cut(s) 582
BsnI GGCC 3 cut(s) 229, 235, 253
BsoBI CYCGRG 1 cut(s) 57
Bsp1286I GDGCHC 1 cut(s) 672
Bsp143I GATC 3 cut(s) 133, 179, 199
BspACI CCGC 5 cut(s) 35, 51, 250, 418, 527
BspANI GGCC 3 cut(s) 229, 235, 253
BspFNI CGCG 2 cut(s) 53, 250
BspLI GGNNCC 2 cut(s) 121, 236
BspMAI CTGCAG 3 cut(s) 68, 179, 214
BspMI ACCTGC 1 cut(s) 182
BspPI GGATC 1 cut(s) 174
BspT107I GGYRCC 1 cut(s) 119
BsrDI GCAATG 1 cut(s) 204
BsrFI RCCGGY 1 cut(s) 244
BsrI ACTGG 2 cut(s) 21, 337
BssAI RCCGGY 1 cut(s) 244
BssECI CCNNGG 3 cut(s) 230, 552, 639
BssMI GATC 3 cut(s) 133, 179, 199
BssT1I CCWWGG 2 cut(s) 552, 639
Bst4CI ACNGT 2 cut(s) 310, 520
Bst6I CTCTTC 1 cut(s) 404
BstC8I GCNNGC 4 cut(s) 64, 192, 221, 476
BstF5I GGATG 3 cut(s) 89, 96, 476
BstFNI CGCG 2 cut(s) 53, 250
BstHHI GCGC 3 cut(s) 55, 219, 250
BstKTI GATC 3 cut(s) 136, 182, 202
BstMBI GATC 3 cut(s) 133, 179, 199
BstMWI GCNNNNNNNGC 5 cut(s) 34, 59, 86, 321, 342
BstSFI CTRYAG 3 cut(s) 64, 175, 210
BstUI CGCG 2 cut(s) 53, 250
BstV1I GCAGC 8 cut(s) 57, 67, 70, 73, 78, 196, 199, 511
BstX2I RGATCY 1 cut(s) 179
BstYI RGATCY 1 cut(s) 179
BsuRI GGCC 3 cut(s) 229, 235, 253
BtgZI GCGATG 1 cut(s) 141
BtsCI GGATG 3 cut(s) 89, 96, 476
BtsI GCAGTG 1 cut(s) 219
BtsIMutI CAGTG 1 cut(s) 219
BveI ACCTGC 1 cut(s) 182
Cac8I GCNNGC 4 cut(s) 64, 192, 221, 476
CaiI CAGNNNCTG 1 cut(s) 518
CfoI GCGC 3 cut(s) 55, 219, 250
Cfr10I RCCGGY 1 cut(s) 244
Cfr13I GGNCC 1 cut(s) 234
CseI GACGC 1 cut(s) 351
Csp6I GTAC 1 cut(s) 386
CviQI GTAC 1 cut(s) 386
DpnI GATC 3 cut(s) 135, 181, 201
DpnII GATC 3 cut(s) 133, 179, 199
Eam1104I CTCTTC 1 cut(s) 404
EarI CTCTTC 1 cut(s) 404
Eco130I CCWWGG 2 cut(s) 552, 639
Eco24I GRGCYC 1 cut(s) 672
Eco88I CYCGRG 1 cut(s) 57
EcoT14I CCWWGG 2 cut(s) 552, 639
EcoT22I ATGCAT 1 cut(s) 580
EcoT38I GRGCYC 1 cut(s) 672
ErhI CCWWGG 2 cut(s) 552, 639
FaiI YATR 7 cut(s) 313, 338, 436, 438, 561, 648, 666
FaqI GGGAC 1 cut(s) 582
FauI CCCGC 1 cut(s) 58
FokI GGATG 3 cut(s) 76, 83, 483
FriOI GRGCYC 1 cut(s) 672
FspBI CTAG 3 cut(s) 137, 467, 503
GlaI GCGC 3 cut(s) 54, 218, 249
GsaI CCCAGC 1 cut(s) 187
GsuI CTGGAG 1 cut(s) 4
HaeIII GGCC 3 cut(s) 229, 235, 253
HapII CCGG 2 cut(s) 226, 245
HgaI GACGC 1 cut(s) 351
HhaI GCGC 3 cut(s) 55, 219, 250
Hin6I GCGC 3 cut(s) 53, 217, 248
HinP1I GCGC 3 cut(s) 53, 217, 248
HindIII AAGCTT 1 cut(s) 686
HinfI GANTC 2 cut(s) 414, 608
HpaII CCGG 2 cut(s) 226, 245
HphI GGTGA 2 cut(s) 234, 689
Hpy188I TCNGA 1 cut(s) 199
Hpy188III TCNNGA 1 cut(s) 137
Hpy99I CGWCG 2 cut(s) 406, 409
HpyCH4III ACNGT 2 cut(s) 310, 520
HpyCH4IV ACGT 1 cut(s) 635
HpyCH4V TGCA 7 cut(s) 66, 89, 177, 212, 315, 474, 578
HpyF10VI GCNNNNNNNGC 5 cut(s) 34, 59, 86, 321, 342
HpySE526I ACGT 1 cut(s) 635
HspAI GCGC 3 cut(s) 53, 217, 248
Kzo9I GATC 3 cut(s) 133, 179, 199
LmnI GCTCC 2 cut(s) 228, 355
Lsp1109I GCAGC 8 cut(s) 57, 67, 70, 73, 78, 196, 199, 511
LweI GCATC 3 cut(s) 98, 461, 565
MaeI CTAG 3 cut(s) 137, 467, 503
MaeII ACGT 1 cut(s) 635
MaeIII GTNAC 1 cut(s) 514
MalI GATC 3 cut(s) 135, 181, 201
MboI GATC 3 cut(s) 133, 179, 199
MboII GAAGA 2 cut(s) 267, 421
MfeI CAATTG 1 cut(s) 657
MflI RGATCY 1 cut(s) 179
MhlI GDGCHC 1 cut(s) 672
MluCI AATT 2 cut(s) 108, 657
MlyI GAGTC 1 cut(s) 617
Mph1103I ATGCAT 1 cut(s) 580
MroXI GAANNNNTTC 1 cut(s) 689
MseI TTAA 1 cut(s) 581
MspI CCGG 2 cut(s) 226, 245
MunI CAATTG 1 cut(s) 657
MvnI CGCG 2 cut(s) 53, 250
MwoI GCNNNNNNNGC 5 cut(s) 34, 59, 86, 321, 342
NdeII GATC 3 cut(s) 133, 179, 199
NlaIV GGNNCC 2 cut(s) 121, 236
NmeAIII GCCGAG 2 cut(s) 96, 211
NsiI ATGCAT 1 cut(s) 580
PaqCI CACCTGC 1 cut(s) 182
PdmI GAANNNNTTC 1 cut(s) 689
PfeI GAWTC 1 cut(s) 414
PleI GAGTC 1 cut(s) 616
PpsI GAGTC 1 cut(s) 616
PshBI ATTAAT 1 cut(s) 581
PspFI CCCAGC 1 cut(s) 183
PspN4I GGNNCC 2 cut(s) 121, 236
PspPI GGNCC 1 cut(s) 234
PstI CTGCAG 3 cut(s) 68, 179, 214
PstNI CAGNNNCTG 1 cut(s) 518
PsuI RGATCY 1 cut(s) 179
RsaI GTAC 1 cut(s) 387
RsaNI GTAC 1 cut(s) 386
SaqAI TTAA 1 cut(s) 581
Sau3AI GATC 3 cut(s) 133, 179, 199
Sau96I GGNCC 1 cut(s) 234
SchI GAGTC 1 cut(s) 617
SduI GDGCHC 1 cut(s) 672
SfaNI GCATC 3 cut(s) 98, 461, 565
SfcI CTRYAG 3 cut(s) 64, 175, 210
SgrAI CRCCGGYG 1 cut(s) 244
Sse9I AATT 2 cut(s) 108, 657
SsiI CCGC 5 cut(s) 35, 51, 250, 418, 527
SspI AATATT 1 cut(s) 7
SspMI CTAG 3 cut(s) 137, 467, 503
StyI CCWWGG 2 cut(s) 552, 639
TaaI ACNGT 2 cut(s) 310, 520
TaiI ACGT 1 cut(s) 638
TasI AATT 2 cut(s) 108, 657
TauI GCSGC 2 cut(s) 37, 253
TfiI GAWTC 1 cut(s) 414
Tru1I TTAA 1 cut(s) 581
Tru9I TTAA 1 cut(s) 581
TscAI CASTG 1 cut(s) 219
TseI GCWGC 8 cut(s) 45, 66, 80, 83, 86, 187, 209, 524
TspDTI ATGAA 2 cut(s) 17, 486
TspRI CASTG 1 cut(s) 219
VspI ATTAAT 1 cut(s) 581
XbaI TCTAGA 1 cut(s) 136
XmnI GAANNNNTTC 1 cut(s) 689
XspI CTAG 3 cut(s) 137, 467, 503
Zsp2I ATGCAT 1 cut(s) 580
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.