Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006576.1

Orthogroup ID

OG0009738

Physical Location & Seq

Genomic Coordinates Reverse (-)

126313 .. 128292

Gene Structure 1980 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006576.1_g000023.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 444 bp

atgttctgggacaaagatgcattaatcaaggggatttgtcaaaacaatgagtcctatcaagtatcggctgctgcaacgtccaaggtttatgagttagcaattgaatatggctcatcaaggcaaagaagcttttcaatcacctcaatagctcagaccgttaagcagaacacaagtactatcgcagttaatgtcggtgtaattcttgatgatcttgattcaataactgcaaaagtttggttaagctgcatcagcatggccctctcagactttcatacctctcctgattccagtaagtcgacgaggctggttttgaacattcgggactctagagcagatgttgtggatgcagctgctgcaggtgcttctctttctccatctcgtgttaatttgagtttcattcagactttttgcaatgacttttgcgctgaatttctagttagctaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

147

Amino Acids

15.93

Weight (kDa)

4.98

Isoelectric Point (pI)

35.27

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009738)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0392441
rosa_multiflora	Rmu_sc0004465.1_g000026 Rmu_sc0006576.1_g000023 Rmu_sc0007753.1_g000018
rosa_roxburghii	Rroxscaffold_1G00009700 Rroxscaffold_2G00130700 Rroxscaffold_4G00277550 Rroxscaffold_4G00309110 Rroxscaffold_4G00310040
rosa_samantha	Rh1DG085900 Rh1DG285100 Rh4AG080900 Rh4DG098600 Rh5BG267100 Rh5DG221200 Rh5DG273700 Rh5DG512300 Rh6AG030700 Rh6BG476200 Rh6CG512300 Rh6CG523800 Rh7AG262200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	347
Acc36I	ACCTGC	1 cut(s)	347
AccI	GTMKAC	1 cut(s)	296
AcsI	RAATTY	1 cut(s)	428
AfaI	GTAC	1 cut(s)	175
AgsI	TTSAA	4 cut(s)	104, 135, 219, 313
AluBI	AGCT	5 cut(s)	129, 149, 243, 350, 441
AluI	AGCT	5 cut(s)	129, 149, 243, 350, 441
AlwNI	CAGNNNCTG	1 cut(s)	353
AoxI	GGCC	1 cut(s)	255
ApeKI	GCWGC	6 cut(s)	68, 71, 243, 347, 350, 353
ApoI	RAATTY	1 cut(s)	428
AseI	ATTAAT	1 cut(s)	23
Asp700I	GAANNNNTTC	1 cut(s)	130
AspLEI	GCGC	1 cut(s)	425
AspS9I	GGNCC	1 cut(s)	256
AsuHPI	GGTGA	1 cut(s)	130
BauI	CACGAG	1 cut(s)	378
BbvI	GCAGC	6 cut(s)	55, 58, 230, 337, 340, 359
BccI	CCATC	1 cut(s)	382
BfaI	CTAG	2 cut(s)	327, 434
BfmI	CTRYAG	1 cut(s)	354
BfuAI	ACCTGC	1 cut(s)	347
BisI	GCNGC	6 cut(s)	69, 72, 244, 348, 351, 354
BlsI	GCNGC	6 cut(s)	70, 73, 245, 349, 352, 355
BmcAI	AGTACT	1 cut(s)	175
BmgT120I	GGNCC	1 cut(s)	256
BmsI	GCATC	3 cut(s)	7, 255, 334
BsaJI	CCNNGG	1 cut(s)	81
Bse1I	ACTGG	1 cut(s)	288
Bse3DI	GCAATG	1 cut(s)	418
BseDI	CCNNGG	1 cut(s)	81
BseGI	GGATG	1 cut(s)	349
BseMI	GCAATG	1 cut(s)	418
BseMII	CTCAG	2 cut(s)	164, 276
BseNI	ACTGG	1 cut(s)	288
BseXI	GCAGC	6 cut(s)	55, 58, 230, 337, 340, 359
BshFI	GGCC	1 cut(s)	257
BslFI	GGGAC	2 cut(s)	23, 335
BsmFI	GGGAC	2 cut(s)	23, 335
BsnI	GGCC	1 cut(s)	257
Bsp143I	GATC	1 cut(s)	208
BspANI	GGCC	1 cut(s)	257
BspCNI	CTCAG	2 cut(s)	163, 275
BspMAI	CTGCAG	1 cut(s)	358
BspMI	ACCTGC	1 cut(s)	347
BsrDI	GCAATG	1 cut(s)	418
BsrI	ACTGG	1 cut(s)	288
BssECI	CCNNGG	1 cut(s)	81
BssMI	GATC	1 cut(s)	208
BssSI	CACGAG	1 cut(s)	378
BssT1I	CCWWGG	1 cut(s)	81
Bst2BI	CACGAG	1 cut(s)	378
Bst4CI	ACNGT	1 cut(s)	157
BstAPI	GCANNNNNTGC	1 cut(s)	353
BstDEI	CTNAG	2 cut(s)	150, 262
BstF5I	GGATG	1 cut(s)	349
BstHHI	GCGC	1 cut(s)	425
BstKTI	GATC	1 cut(s)	211
BstMBI	GATC	1 cut(s)	208
BstMWI	GCNNNNNNNGC	3 cut(s)	249, 353, 359
BstSFI	CTRYAG	1 cut(s)	354
BstV1I	GCAGC	6 cut(s)	55, 58, 230, 337, 340, 359
BsuRI	GGCC	1 cut(s)	257
BtsCI	GGATG	1 cut(s)	349
BveI	ACCTGC	1 cut(s)	347
CaiI	CAGNNNCTG	1 cut(s)	353
CfoI	GCGC	1 cut(s)	425
Cfr13I	GGNCC	1 cut(s)	256
Csp6I	GTAC	1 cut(s)	174
CviAII	CATG	1 cut(s)	253
CviJI	RGCY	9 cut(s)	68, 111, 129, 149, 243, 257, 304, 350, 441
CviKI_1	RGCY	9 cut(s)	68, 111, 129, 149, 243, 257, 304, 350, 441
CviQI	GTAC	1 cut(s)	174
DdeI	CTNAG	2 cut(s)	150, 262
DpnI	GATC	1 cut(s)	210
DpnII	GATC	1 cut(s)	208
Eco130I	CCWWGG	1 cut(s)	81
EcoT14I	CCWWGG	1 cut(s)	81
EcoT22I	ATGCAT	1 cut(s)	22
ErhI	CCWWGG	1 cut(s)	81
FaeI	CATG	1 cut(s)	256
FaiI	YATR	4 cut(s)	90, 108, 254, 273
FaqI	GGGAC	2 cut(s)	23, 335
FatI	CATG	1 cut(s)	252
FblI	GTMKAC	1 cut(s)	296
Fnu4HI	GCNGC	6 cut(s)	69, 72, 244, 348, 351, 354
FokI	GGATG	1 cut(s)	356
Fsp4HI	GCNGC	6 cut(s)	69, 72, 244, 348, 351, 354
FspBI	CTAG	2 cut(s)	327, 434
GlaI	GCGC	1 cut(s)	424
GluI	GCNGC	6 cut(s)	69, 72, 244, 348, 351, 354
HaeIII	GGCC	1 cut(s)	257
HhaI	GCGC	1 cut(s)	425
Hin1II	CATG	1 cut(s)	256
Hin6I	GCGC	1 cut(s)	423
HinP1I	GCGC	1 cut(s)	423
HincII	GTYRAC	1 cut(s)	297
HindII	GTYRAC	1 cut(s)	297
HindIII	AAGCTT	1 cut(s)	127
HinfI	GANTC	4 cut(s)	50, 215, 284, 323
HphI	GGTGA	1 cut(s)	130
Hpy166II	GTNNAC	1 cut(s)	297
Hpy188I	TCNGA	3 cut(s)	153, 265, 402
Hpy188III	TCNNGA	5 cut(s)	203, 212, 281, 320, 327
Hpy8I	GTNNAC	1 cut(s)	297
Hpy99I	CGWCG	1 cut(s)	301
HpyCH4III	ACNGT	1 cut(s)	157
HpyCH4IV	ACGT	1 cut(s)	77
HpyCH4V	TGCA	7 cut(s)	20, 74, 227, 246, 347, 356, 411
HpyF10VI	GCNNNNNNNGC	3 cut(s)	249, 353, 359
HpyF3I	CTNAG	2 cut(s)	150, 262
HpySE526I	ACGT	1 cut(s)	77
Hsp92II	CATG	1 cut(s)	256
HspAI	GCGC	1 cut(s)	423
Kzo9I	GATC	1 cut(s)	208
LpnPI	CCDG	4 cut(s)	290, 294, 301, 342
Lsp1109I	GCAGC	6 cut(s)	55, 58, 230, 337, 340, 359
LweI	GCATC	3 cut(s)	7, 255, 334
MaeI	CTAG	2 cut(s)	327, 434
MaeII	ACGT	1 cut(s)	77
MalI	GATC	1 cut(s)	210
MboI	GATC	1 cut(s)	208
MfeI	CAATTG	1 cut(s)	99
MluCI	AATT	4 cut(s)	99, 198, 385, 428
MlyI	GAGTC	2 cut(s)	59, 317
MnlI	CCTC	4 cut(s)	151, 269, 286, 294
Mph1103I	ATGCAT	1 cut(s)	22
MroXI	GAANNNNTTC	1 cut(s)	130
MseI	TTAA	5 cut(s)	23, 159, 186, 239, 384
MslI	CAYNNNNRTG	1 cut(s)	251
MspA1I	CMGCKG	1 cut(s)	350
MunI	CAATTG	1 cut(s)	99
MwoI	GCNNNNNNNGC	3 cut(s)	249, 353, 359
NdeII	GATC	1 cut(s)	208
NlaIII	CATG	1 cut(s)	256
NsiI	ATGCAT	1 cut(s)	22
PaqCI	CACCTGC	1 cut(s)	347
PdmI	GAANNNNTTC	1 cut(s)	130
PfeI	GAWTC	2 cut(s)	215, 284
PkrI	GCNGC	6 cut(s)	70, 73, 245, 349, 352, 355
PleI	GAGTC	2 cut(s)	58, 317
PpsI	GAGTC	2 cut(s)	58, 317
PshBI	ATTAAT	1 cut(s)	23
PspPI	GGNCC	1 cut(s)	256
PstI	CTGCAG	1 cut(s)	358
PstNI	CAGNNNCTG	1 cut(s)	353
PvuII	CAGCTG	1 cut(s)	350
RsaI	GTAC	1 cut(s)	175
RsaNI	GTAC	1 cut(s)	174
RseI	CAYNNNNRTG	1 cut(s)	251
SalI	GTCGAC	1 cut(s)	295
SaqAI	TTAA	5 cut(s)	23, 159, 186, 239, 384
SatI	GCNGC	6 cut(s)	69, 72, 244, 348, 351, 354
Sau3AI	GATC	1 cut(s)	208
Sau96I	GGNCC	1 cut(s)	256
ScaI	AGTACT	1 cut(s)	175
SchI	GAGTC	2 cut(s)	59, 317
SfaNI	GCATC	3 cut(s)	7, 255, 334
SfcI	CTRYAG	1 cut(s)	354
SmiMI	CAYNNNNRTG	1 cut(s)	251
Sse9I	AATT	4 cut(s)	99, 198, 385, 428
SspMI	CTAG	2 cut(s)	327, 434
StyI	CCWWGG	1 cut(s)	81
TaaI	ACNGT	1 cut(s)	157
TaiI	ACGT	1 cut(s)	80
TaqI	TCGA	1 cut(s)	296
TasI	AATT	4 cut(s)	99, 198, 385, 428
TatI	WGTACW	1 cut(s)	173
TfiI	GAWTC	2 cut(s)	215, 284
Tru1I	TTAA	5 cut(s)	23, 159, 186, 239, 384
Tru9I	TTAA	5 cut(s)	23, 159, 186, 239, 384
TseI	GCWGC	6 cut(s)	68, 71, 243, 347, 350, 353
TspDTI	ATGAA	2 cut(s)	260, 385
VspI	ATTAAT	1 cut(s)	23
XapI	RAATTY	1 cut(s)	428
XbaI	TCTAGA	1 cut(s)	326
XmiI	GTMKAC	1 cut(s)	296
XmnI	GAANNNNTTC	1 cut(s)	130
XspI	CTAG	2 cut(s)	327, 434
ZrmI	AGTACT	1 cut(s)	175
Zsp2I	ATGCAT	1 cut(s)	22

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.