Rroxscaffold_2G00130700

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000002
OG0009738
Physical Location & Seq
Forward (+)
66948503 .. 66951114
2612 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_2G00130700.1

Sequence Viewer

Length: 483 bp
ATGGTTGCCAAGGGATATGTTCTGGGACAAGATGCATTAACCAAGGGGATTTGTCAAAACAATGAGTCCTATCAAGTATCGGCTGCTGCAACATCCAAGGTTTATGAGTTAGCAATTGAATATGGCTCGTCAAGGCAAAGAAGCTTTTCAATCACCTCAATAGCTCAGACAACCGGAGTAATCAATGTCACTCCTCCGGCGACACCAGCAGCGCCGTCGCTCGGCCCGTACGAACGAGGACCTGCAGCGCACGGGATATGCAAAGAGAGGTGCAATGTCTCTGCGGCCGAGCATAAGAACCGAGGTGAGGAGGAATTCTTACAAGTCGGGGGTGGACGCCGACGTTCCTATCCGACCCGAATTCCCACATCGGGACCAGCGCCTCCGGAGCTTCCGTACAAGCAGCAGCCGACCGGGACGATGGGCTTTTACGGTGGGCTCGAGGTCGGCGAAGATTACGGCCCTAAAAAATTAAAGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

160

Amino Acids

17.09

Weight (kDa)

9.13

Isoelectric Point (pI)

46.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 250
AccIII TCCGGA 1 cut(s) 385
AciI CCGC 1 cut(s) 284
AcoI YGGCCR 1 cut(s) 285
AcsI RAATTY 2 cut(s) 314, 360
AcyI GRCGYC 1 cut(s) 337
AfaI GTAC 2 cut(s) 230, 398
AfiI CCNNNNNNNGG 3 cut(s) 221, 307, 371
AgsI TTSAA 2 cut(s) 119, 150
AluBI AGCT 3 cut(s) 144, 164, 391
AluI AGCT 3 cut(s) 144, 164, 391
Alw26I GTCTC 1 cut(s) 283
Ama87I CYCGRG 1 cut(s) 440
Aor13HI TCCGGA 1 cut(s) 385
AoxI GGCC 3 cut(s) 223, 285, 460
ApeKI GCWGC 6 cut(s) 83, 86, 209, 245, 403, 406
ApoI RAATTY 2 cut(s) 314, 360
Asp700I GAANNNNTTC 1 cut(s) 145
AspLEI GCGC 3 cut(s) 214, 250, 382
AspS9I GGNCC 4 cut(s) 224, 239, 374, 461
AsuC2I CCSGG 1 cut(s) 415
AsuHPI GGTGA 2 cut(s) 145, 317
AvaI CYCGRG 1 cut(s) 440
AvaII GGWCC 2 cut(s) 239, 374
BanII GRGCYC 1 cut(s) 441
BbvI GCAGC 6 cut(s) 70, 73, 221, 257, 415, 418
BccI CCATC 1 cut(s) 415
BceAI ACGGC 2 cut(s) 199, 475
BcgI CGANNNNNNTGC 2 cut(s) 198, 232
BcnI CCSGG 1 cut(s) 415
BcoDI GTCTC 1 cut(s) 283
BfmI CTRYAG 1 cut(s) 243
BfoI RGCGCY 2 cut(s) 215, 383
BfuAI ACCTGC 1 cut(s) 250
BisI GCNGC 7 cut(s) 84, 87, 210, 246, 285, 404, 407
BlsI GCNGC 7 cut(s) 85, 88, 211, 247, 286, 405, 408
Bme1390I CCNGG 1 cut(s) 415
Bme18I GGWCC 2 cut(s) 239, 374
BmeT110I CYCGRG 1 cut(s) 440
BmgT120I GGNCC 4 cut(s) 224, 239, 374, 461
BmiI GGNNCC 1 cut(s) 375
BmrFI CCNGG 1 cut(s) 415
BmsI GCATC 1 cut(s) 22
BpuMI CCSGG 1 cut(s) 415
BsaHI GRCGYC 1 cut(s) 337
BsaJI CCNNGG 4 cut(s) 9, 42, 96, 301
BsaWI WCCGGW 2 cut(s) 173, 385
BsaXI ACNNNNNCTCC 2 cut(s) 380, 410
Bsc4I CCNNNNNNNGG 3 cut(s) 221, 307, 371
Bse3DI GCAATG 1 cut(s) 280
BseAI TCCGGA 1 cut(s) 385
BseDI CCNNGG 4 cut(s) 9, 42, 96, 301
BseGI GGATG 1 cut(s) 92
BseLI CCNNNNNNNGG 3 cut(s) 221, 307, 371
BseMI GCAATG 1 cut(s) 280
BseMII CTCAG 1 cut(s) 179
BseRI GAGGAG 2 cut(s) 183, 323
BseX3I CGGCCG 1 cut(s) 285
BseXI GCAGC 6 cut(s) 70, 73, 221, 257, 415, 418
Bsh1285I CGRYCG 2 cut(s) 288, 414
BshFI GGCC 3 cut(s) 225, 287, 462
BsiEI CGRYCG 2 cut(s) 288, 414
BsiHKCI CYCGRG 1 cut(s) 440
BsiSI CCGG 4 cut(s) 174, 197, 386, 414
BsiWI CGTACG 1 cut(s) 228
BslFI GGGAC 3 cut(s) 39, 387, 430
BslI CCNNNNNNNGG 3 cut(s) 221, 307, 371
BsmAI GTCTC 1 cut(s) 283
BsmFI GGGAC 3 cut(s) 39, 387, 430
BsnI GGCC 3 cut(s) 225, 287, 462
BsoBI CYCGRG 1 cut(s) 440
Bsp1286I GDGCHC 1 cut(s) 441
Bsp13I TCCGGA 1 cut(s) 385
BspACI CCGC 1 cut(s) 284
BspANI GGCC 3 cut(s) 225, 287, 462
BspCNI CTCAG 1 cut(s) 178
BspEI TCCGGA 1 cut(s) 385
BspLI GGNNCC 1 cut(s) 375
BspMAI CTGCAG 1 cut(s) 247
BspMI ACCTGC 1 cut(s) 250
BsrDI GCAATG 1 cut(s) 280
BssECI CCNNGG 4 cut(s) 9, 42, 96, 301
BssNI GRCGYC 1 cut(s) 337
BssT1I CCWWGG 3 cut(s) 9, 42, 96
Bst4CI ACNGT 1 cut(s) 434
BstACI GRCGYC 1 cut(s) 337
BstDEI CTNAG 1 cut(s) 165
BstF5I GGATG 1 cut(s) 92
BstH2I RGCGCY 2 cut(s) 215, 383
BstHHI GCGC 3 cut(s) 214, 250, 382
BstMAI GTCTC 1 cut(s) 283
BstMCI CGRYCG 2 cut(s) 288, 414
BstMWI GCNNNNNNNGC 2 cut(s) 206, 388
BstSCI CCNGG 1 cut(s) 413
BstSFI CTRYAG 1 cut(s) 243
BstV1I GCAGC 6 cut(s) 70, 73, 221, 257, 415, 418
BstZI CGGCCG 1 cut(s) 285
BsuRI GGCC 3 cut(s) 225, 287, 462
BtsCI GGATG 1 cut(s) 92
BveI ACCTGC 1 cut(s) 250
CfoI GCGC 3 cut(s) 214, 250, 382
Cfr13I GGNCC 4 cut(s) 224, 239, 374, 461
CseI GACGC 1 cut(s) 345
Csp6I GTAC 2 cut(s) 229, 397
CviQI GTAC 2 cut(s) 229, 397
DdeI CTNAG 1 cut(s) 165
EaeI YGGCCR 1 cut(s) 285
EagI CGGCCG 1 cut(s) 285
EclXI CGGCCG 1 cut(s) 285
Eco130I CCWWGG 3 cut(s) 9, 42, 96
Eco24I GRGCYC 1 cut(s) 441
Eco47I GGWCC 2 cut(s) 239, 374
Eco52I CGGCCG 1 cut(s) 285
Eco88I CYCGRG 1 cut(s) 440
EcoO109I RGGNCCY 1 cut(s) 239
EcoRI GAATTC 2 cut(s) 314, 360
EcoT14I CCWWGG 3 cut(s) 9, 42, 96
EcoT22I ATGCAT 1 cut(s) 37
EcoT38I GRGCYC 1 cut(s) 441
ErhI CCWWGG 3 cut(s) 9, 42, 96
FaiI YATR 5 cut(s) 18, 105, 123, 259, 294
FaqI GGGAC 3 cut(s) 39, 387, 430
Fnu4HI GCNGC 7 cut(s) 84, 87, 210, 246, 285, 404, 407
FokI GGATG 1 cut(s) 79
FriOI GRGCYC 1 cut(s) 441
Fsp4HI GCNGC 7 cut(s) 84, 87, 210, 246, 285, 404, 407
GlaI GCGC 3 cut(s) 213, 249, 381
GluI GCNGC 7 cut(s) 84, 87, 210, 246, 285, 404, 407
HaeII RGCGCY 2 cut(s) 215, 383
HaeIII GGCC 3 cut(s) 225, 287, 462
HapII CCGG 4 cut(s) 174, 197, 386, 414
HgaI GACGC 1 cut(s) 345
HhaI GCGC 3 cut(s) 214, 250, 382
Hin1I GRCGYC 1 cut(s) 337
Hin6I GCGC 3 cut(s) 212, 248, 380
HinP1I GCGC 3 cut(s) 212, 248, 380
HindIII AAGCTT 1 cut(s) 142
HinfI GANTC 1 cut(s) 65
HpaII CCGG 4 cut(s) 174, 197, 386, 414
HphI GGTGA 2 cut(s) 145, 317
Hpy166II GTNNAC 1 cut(s) 335
Hpy188I TCNGA 2 cut(s) 168, 354
Hpy188III TCNNGA 2 cut(s) 372, 386
Hpy8I GTNNAC 1 cut(s) 335
Hpy99I CGWCG 2 cut(s) 220, 345
HpyCH4III ACNGT 1 cut(s) 434
HpyCH4IV ACGT 1 cut(s) 343
HpyCH4V TGCA 5 cut(s) 35, 89, 245, 261, 273
HpyF10VI GCNNNNNNNGC 2 cut(s) 206, 388
HpyF3I CTNAG 1 cut(s) 165
HpySE526I ACGT 1 cut(s) 343
Hsp92I GRCGYC 1 cut(s) 337
HspAI GCGC 3 cut(s) 212, 248, 380
Kpn2I TCCGGA 1 cut(s) 385
LmnI GCTCC 1 cut(s) 388
LpnPI CCDG 8 cut(s) 8, 187, 210, 219, 255, 390, 399, 427
Lsp1109I GCAGC 6 cut(s) 70, 73, 221, 257, 415, 418
LweI GCATC 1 cut(s) 22
MaeII ACGT 1 cut(s) 343
MaeIII GTNAC 1 cut(s) 187
MboII GAAGA 1 cut(s) 464
MfeI CAATTG 1 cut(s) 114
MhlI GDGCHC 1 cut(s) 441
MluCI AATT 4 cut(s) 114, 314, 360, 470
MlyI GAGTC 1 cut(s) 74
MmeI TCCRAC 1 cut(s) 377
MnlI CCTC 9 cut(s) 166, 204, 230, 261, 296, 301, 304, 393, 436
Mph1103I ATGCAT 1 cut(s) 37
MroI TCCGGA 1 cut(s) 385
MroXI GAANNNNTTC 1 cut(s) 145
MseI TTAA 2 cut(s) 38, 473
MspI CCGG 4 cut(s) 174, 197, 386, 414
MspR9I CCNGG 1 cut(s) 415
MunI CAATTG 1 cut(s) 114
MwoI GCNNNNNNNGC 2 cut(s) 206, 388
NciI CCSGG 1 cut(s) 415
NlaIV GGNNCC 1 cut(s) 375
NmeAIII GCCGAG 2 cut(s) 201, 313
NmuCI GTSAC 1 cut(s) 187
NsiI ATGCAT 1 cut(s) 37
PaeR7I CTCGAG 1 cut(s) 440
PcsI WCGNNNNNNNCGW 4 cut(s) 224, 228, 438, 447
PdmI GAANNNNTTC 1 cut(s) 145
Pfl23II CGTACG 1 cut(s) 228
PkrI GCNGC 7 cut(s) 85, 88, 211, 247, 286, 405, 408
PleI GAGTC 1 cut(s) 73
PpsI GAGTC 1 cut(s) 73
PpuMI RGGWCCY 1 cut(s) 239
Psp5II RGGWCCY 1 cut(s) 239
PspLI CGTACG 1 cut(s) 228
PspN4I GGNNCC 1 cut(s) 375
PspPI GGNCC 4 cut(s) 224, 239, 374, 461
PspPPI RGGWCCY 1 cut(s) 239
PspXI VCTCGAGB 1 cut(s) 440
PstI CTGCAG 1 cut(s) 247
RsaI GTAC 2 cut(s) 230, 398
RsaNI GTAC 2 cut(s) 229, 397
SaqAI TTAA 2 cut(s) 38, 473
SatI GCNGC 7 cut(s) 84, 87, 210, 246, 285, 404, 407
Sau96I GGNCC 4 cut(s) 224, 239, 374, 461
SchI GAGTC 1 cut(s) 74
ScrFI CCNGG 1 cut(s) 415
SduI GDGCHC 1 cut(s) 441
SfaNI GCATC 1 cut(s) 22
SfcI CTRYAG 1 cut(s) 243
Sfr274I CTCGAG 1 cut(s) 440
SinI GGWCC 2 cut(s) 239, 374
SlaI CTCGAG 1 cut(s) 440
SmlI CTYRAG 1 cut(s) 440
SmoI CTYRAG 1 cut(s) 440
Sse9I AATT 4 cut(s) 114, 314, 360, 470
SsiI CCGC 1 cut(s) 284
StyD4I CCNGG 1 cut(s) 413
StyI CCWWGG 3 cut(s) 9, 42, 96
TaaI ACNGT 1 cut(s) 434
TaiI ACGT 1 cut(s) 346
TaqI TCGA 1 cut(s) 441
TasI AATT 4 cut(s) 114, 314, 360, 470
TauI GCSGC 1 cut(s) 287
Tru1I TTAA 2 cut(s) 38, 473
Tru9I TTAA 2 cut(s) 38, 473
TseFI GTSAC 1 cut(s) 187
TseI GCWGC 6 cut(s) 83, 86, 209, 245, 403, 406
Tsp45I GTSAC 1 cut(s) 187
TspGWI ACGGA 1 cut(s) 384
VpaK11BI GGWCC 2 cut(s) 239, 374
XapI RAATTY 2 cut(s) 314, 360
XhoI CTCGAG 1 cut(s) 440
XmnI GAANNNNTTC 1 cut(s) 145
Zsp2I ATGCAT 1 cut(s) 37
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.