RNA recognition motif
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| Species | Orthologous Gene IDs |
|---|---|
| rosa_chinensis | RchiOBHm_Chr4g0392441 |
| rosa_multiflora | Rmu_sc0004465.1_g000026 Rmu_sc0006576.1_g000023 Rmu_sc0007753.1_g000018 |
| rosa_roxburghii | Rroxscaffold_1G00009700 Rroxscaffold_2G00130700 Rroxscaffold_4G00277550 Rroxscaffold_4G00309110 Rroxscaffold_4G00310040 |
| rosa_samantha | Rh1DG085900 Rh1DG285100 Rh4AG080900 Rh4DG098600 Rh5BG267100 Rh5DG221200 Rh5DG273700 Rh5DG512300 Rh6AG030700 Rh6BG476200 Rh6CG512300 Rh6CG523800 Rh7AG262200 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AgsI | TTSAA | 2 cut(s) | 119, 151 |
| AluBI | AGCT | 2 cut(s) | 145, 165 |
| AluI | AGCT | 2 cut(s) | 145, 165 |
| ApeKI | GCWGC | 1 cut(s) | 83 |
| AseI | ATTAAT | 1 cut(s) | 38 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 146 |
| AsuHPI | GGTGA | 1 cut(s) | 146 |
| BbvI | GCAGC | 1 cut(s) | 70 |
| BisI | GCNGC | 1 cut(s) | 84 |
| BlsI | GCNGC | 1 cut(s) | 85 |
| BmsI | GCATC | 1 cut(s) | 22 |
| BsaJI | CCNNGG | 2 cut(s) | 9, 96 |
| BseDI | CCNNGG | 2 cut(s) | 9, 96 |
| BseMII | CTCAG | 1 cut(s) | 180 |
| BseXI | GCAGC | 1 cut(s) | 70 |
| BslFI | GGGAC | 1 cut(s) | 39 |
| BsmFI | GGGAC | 1 cut(s) | 39 |
| BspCNI | CTCAG | 1 cut(s) | 179 |
| BspHI | TCATGA | 1 cut(s) | 181 |
| BssECI | CCNNGG | 2 cut(s) | 9, 96 |
| BssT1I | CCWWGG | 2 cut(s) | 9, 96 |
| BstDEI | CTNAG | 2 cut(s) | 166, 189 |
| BstV1I | GCAGC | 1 cut(s) | 70 |
| CciI | TCATGA | 1 cut(s) | 181 |
| CviAII | CATG | 1 cut(s) | 182 |
| CviJI | RGCY | 4 cut(s) | 83, 127, 145, 165 |
| CviKI_1 | RGCY | 4 cut(s) | 83, 127, 145, 165 |
| DdeI | CTNAG | 2 cut(s) | 166, 189 |
| Eco130I | CCWWGG | 2 cut(s) | 9, 96 |
| EcoT14I | CCWWGG | 2 cut(s) | 9, 96 |
| EcoT22I | ATGCAT | 1 cut(s) | 37 |
| ErhI | CCWWGG | 2 cut(s) | 9, 96 |
| FaeI | CATG | 1 cut(s) | 185 |
| FaiI | YATR | 6 cut(s) | 18, 105, 123, 174, 176, 183 |
| FaqI | GGGAC | 1 cut(s) | 39 |
| FatI | CATG | 1 cut(s) | 181 |
| Fnu4HI | GCNGC | 1 cut(s) | 84 |
| Fsp4HI | GCNGC | 1 cut(s) | 84 |
| GluI | GCNGC | 1 cut(s) | 84 |
| Hin1II | CATG | 1 cut(s) | 185 |
| HindIII | AAGCTT | 1 cut(s) | 143 |
| HinfI | GANTC | 1 cut(s) | 65 |
| HphI | GGTGA | 1 cut(s) | 146 |
| Hpy188I | TCNGA | 1 cut(s) | 169 |
| Hpy188III | TCNNGA | 1 cut(s) | 182 |
| HpyCH4IV | ACGT | 1 cut(s) | 92 |
| HpyCH4V | TGCA | 1 cut(s) | 35 |
| HpyF3I | CTNAG | 2 cut(s) | 166, 189 |
| HpySE526I | ACGT | 1 cut(s) | 92 |
| Hsp92II | CATG | 1 cut(s) | 185 |
| LpnPI | CCDG | 1 cut(s) | 8 |
| Lsp1109I | GCAGC | 1 cut(s) | 70 |
| LweI | GCATC | 1 cut(s) | 22 |
| MaeII | ACGT | 1 cut(s) | 92 |
| MfeI | CAATTG | 1 cut(s) | 114 |
| MluCI | AATT | 1 cut(s) | 114 |
| MlyI | GAGTC | 1 cut(s) | 74 |
| MnlI | CCTC | 1 cut(s) | 167 |
| Mph1103I | ATGCAT | 1 cut(s) | 37 |
| MroXI | GAANNNNTTC | 1 cut(s) | 146 |
| MseI | TTAA | 1 cut(s) | 38 |
| MunI | CAATTG | 1 cut(s) | 114 |
| NlaIII | CATG | 1 cut(s) | 185 |
| NsiI | ATGCAT | 1 cut(s) | 37 |
| PagI | TCATGA | 1 cut(s) | 181 |
| PdmI | GAANNNNTTC | 1 cut(s) | 146 |
| PkrI | GCNGC | 1 cut(s) | 85 |
| PleI | GAGTC | 1 cut(s) | 73 |
| PpsI | GAGTC | 1 cut(s) | 73 |
| PshBI | ATTAAT | 1 cut(s) | 38 |
| SaqAI | TTAA | 1 cut(s) | 38 |
| SatI | GCNGC | 1 cut(s) | 84 |
| SchI | GAGTC | 1 cut(s) | 74 |
| SetI | ASST | 6 cut(s) | 95, 102, 147, 159, 167, 181 |
| SfaNI | GCATC | 1 cut(s) | 22 |
| SgeI | CNNG | 7 cut(s) | 22, 35, 41, 55, 86, 109, 145 |
| Sse9I | AATT | 1 cut(s) | 114 |
| StyI | CCWWGG | 2 cut(s) | 9, 96 |
| TaiI | ACGT | 1 cut(s) | 95 |
| TasI | AATT | 1 cut(s) | 114 |
| Tru1I | TTAA | 1 cut(s) | 38 |
| Tru9I | TTAA | 1 cut(s) | 38 |
| TseI | GCWGC | 1 cut(s) | 83 |
| VspI | ATTAAT | 1 cut(s) | 38 |
| XmnI | GAANNNNTTC | 1 cut(s) | 146 |
| Zsp2I | ATGCAT | 1 cut(s) | 37 |