Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0007753.1

Orthogroup ID

OG0009738

Physical Location & Seq

Genomic Coordinates Forward (+)

88205 .. 89335

Gene Structure 1131 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0007753.1_g000018.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

atggttgattttacacagccttacatggaatcaggactagttgtagttgttcctgtcaaacagttaaaatcaaacccttgggctttcctgaagccatttactattgagatgtggttagtcaccggtgcattcttcctttttgtgggagtcgttgtttggattctagagcacaggattaatcacaagttccgtggagagaacactgtgagcactctaggacggctggtgctgcttatatggttgtttgtggtgttgattatcaattcgagctatacagctagtttgacatcgatcctcactgtacaacagatgacatcacagattgaggggatagacagcttaatatcaagtaatgatccaatcggagttcaagatgagtcatttgcatggaattatttggttaataagctcaacatagcggaagttgtcaaaacaatggttgccaagggatatgttctgggacaagatgcattaatcaaggggatttgtcaaaacaatgagtcctatcaagtatcggctgctacaacgtccaaggtttatgagttagcaattgaatatgggctcatcaaggcaaaaaaaaatttcaatcacctcaatagctcagagtatgtaggtcatgatacttag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009605 GO:0009611 GO:0009612 GO:0009628 GO:0009719 GO:0009987 GO:0010033 GO:0010034 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015276 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0033554 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070417 GO:0070588 GO:0070838 GO:0070887 GO:0071214 GO:0071229 GO:0071230 GO:0071236 GO:0071260 GO:0071310 GO:0071311 GO:0071417 GO:0071495 GO:0071496 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0104004 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

208

Amino Acids

23.31

Weight (kDa)

6.07

Isoelectric Point (pI)

27.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0009738)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0392441
rosa_multiflora	Rmu_sc0004465.1_g000026 Rmu_sc0006576.1_g000023 Rmu_sc0007753.1_g000018
rosa_roxburghii	Rroxscaffold_1G00009700 Rroxscaffold_2G00130700 Rroxscaffold_4G00277550 Rroxscaffold_4G00309110 Rroxscaffold_4G00310040
rosa_samantha	Rh1DG085900 Rh1DG285100 Rh4AG080900 Rh4DG098600 Rh5BG267100 Rh5DG221200 Rh5DG273700 Rh5DG512300 Rh6AG030700 Rh6BG476200 Rh6CG512300 Rh6CG523800 Rh7AG262200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	419
AclWI	GGATC	2 cut(s)	286, 350
AcsI	RAATTY	1 cut(s)	580
AcuI	CTGAAG	1 cut(s)	110
AfaI	GTAC	1 cut(s)	303
AfiI	CCNNNNNNNGG	1 cut(s)	142
AgeI	ACCGGT	1 cut(s)	122
AgsI	TTSAA	3 cut(s)	371, 554, 586
AhlI	ACTAGT	1 cut(s)	37
AluBI	AGCT	5 cut(s)	270, 278, 339, 409, 600
AluI	AGCT	5 cut(s)	270, 278, 339, 409, 600
Alw21I	GWGCWC	2 cut(s)	171, 212
AlwI	GGATC	2 cut(s)	286, 350
ApeKI	GCWGC	2 cut(s)	229, 518
ApoI	RAATTY	1 cut(s)	580
AseI	ATTAAT	2 cut(s)	177, 473
AsiGI	ACCGGT	1 cut(s)	122
AsuHPI	GGTGA	2 cut(s)	112, 581
BanII	GRGCYC	1 cut(s)	564
Bbv12I	GWGCWC	2 cut(s)	171, 212
BbvI	GCAGC	2 cut(s)	216, 505
BceAI	ACGGC	1 cut(s)	236
BcuI	ACTAGT	1 cut(s)	37
BfaI	CTAG	4 cut(s)	38, 164, 215, 279
BisI	GCNGC	2 cut(s)	230, 519
BlsI	GCNGC	2 cut(s)	231, 520
BmsI	GCATC	1 cut(s)	457
Bsa29I	ATCGAT	1 cut(s)	290
BsaJI	CCNNGG	4 cut(s)	77, 190, 444, 531
BsaWI	WCCGGW	1 cut(s)	122
BsaXI	ACNNNNNCTCC	2 cut(s)	138, 168
Bsc4I	CCNNNNNNNGG	1 cut(s)	142
Bse118I	RCCGGY	1 cut(s)	122
BseCI	ATCGAT	1 cut(s)	290
BseDI	CCNNGG	4 cut(s)	77, 190, 444, 531
BseLI	CCNNNNNNNGG	1 cut(s)	142
BseMII	CTCAG	1 cut(s)	615
BseXI	GCAGC	2 cut(s)	216, 505
BshTI	ACCGGT	1 cut(s)	122
BshVI	ATCGAT	1 cut(s)	290
BsiHKAI	GWGCWC	2 cut(s)	171, 212
BsiSI	CCGG	1 cut(s)	123
BslFI	GGGAC	1 cut(s)	474
BslI	CCNNNNNNNGG	1 cut(s)	142
BsmFI	GGGAC	1 cut(s)	474
BsmI	GAATGC	1 cut(s)	128
Bsp1286I	GDGCHC	3 cut(s)	171, 212, 564
Bsp1407I	TGTACA	1 cut(s)	301
Bsp143I	GATC	2 cut(s)	291, 355
BspACI	CCGC	1 cut(s)	419
BspCNI	CTCAG	1 cut(s)	614
BspDI	ATCGAT	1 cut(s)	290
BspHI	TCATGA	1 cut(s)	616
BspPI	GGATC	2 cut(s)	286, 350
BsrFI	RCCGGY	1 cut(s)	122
BsrGI	TGTACA	1 cut(s)	301
BssAI	RCCGGY	1 cut(s)	122
BssECI	CCNNGG	4 cut(s)	77, 190, 444, 531
BssMI	GATC	2 cut(s)	291, 355
BssT1I	CCWWGG	3 cut(s)	77, 444, 531
Bst4CI	ACNGT	3 cut(s)	63, 205, 301
BstAUI	TGTACA	1 cut(s)	301
BstDEI	CTNAG	2 cut(s)	601, 624
BstDSI	CCRYGG	1 cut(s)	190
BstKTI	GATC	2 cut(s)	294, 358
BstMBI	GATC	2 cut(s)	291, 355
BstMWI	GCNNNNNNNGC	1 cut(s)	229
BstV1I	GCAGC	2 cut(s)	216, 505
Bsu15I	ATCGAT	1 cut(s)	290
BsuTUI	ATCGAT	1 cut(s)	290
BtgI	CCRYGG	1 cut(s)	190
BtsIMutI	CAGTG	2 cut(s)	201, 297
CciI	TCATGA	1 cut(s)	616
Cfr10I	RCCGGY	1 cut(s)	122
ClaI	ATCGAT	1 cut(s)	290
Csp6I	GTAC	1 cut(s)	302
CspAI	ACCGGT	1 cut(s)	122
CspCI	CAANNNNNGTGG	2 cut(s)	172, 207
CviAII	CATG	3 cut(s)	25, 387, 617
CviQI	GTAC	1 cut(s)	302
DdeI	CTNAG	2 cut(s)	601, 624
DpnI	GATC	2 cut(s)	293, 357
DpnII	GATC	2 cut(s)	291, 355
Eco130I	CCWWGG	3 cut(s)	77, 444, 531
Eco24I	GRGCYC	1 cut(s)	564
Eco57I	CTGAAG	1 cut(s)	110
EcoT14I	CCWWGG	3 cut(s)	77, 444, 531
EcoT22I	ATGCAT	1 cut(s)	472
EcoT38I	GRGCYC	1 cut(s)	564
ErhI	CCWWGG	3 cut(s)	77, 444, 531
FaeI	CATG	3 cut(s)	28, 390, 620
FaqI	GGGAC	1 cut(s)	474
FatI	CATG	3 cut(s)	24, 386, 616
Fnu4HI	GCNGC	2 cut(s)	230, 519
FriOI	GRGCYC	1 cut(s)	564
Fsp4HI	GCNGC	2 cut(s)	230, 519
FspBI	CTAG	4 cut(s)	38, 164, 215, 279
GluI	GCNGC	2 cut(s)	230, 519
HapII	CCGG	1 cut(s)	123
Hin1II	CATG	3 cut(s)	28, 390, 620
HinfI	GANTC	5 cut(s)	29, 147, 160, 377, 500
HpaII	CCGG	1 cut(s)	123
HphI	GGTGA	2 cut(s)	112, 581
Hpy188I	TCNGA	2 cut(s)	365, 604
Hpy188III	TCNNGA	5 cut(s)	33, 88, 164, 371, 617
HpyCH4III	ACNGT	3 cut(s)	63, 205, 301
HpyCH4IV	ACGT	1 cut(s)	527
HpyCH4V	TGCA	3 cut(s)	128, 386, 470
HpyF10VI	GCNNNNNNNGC	1 cut(s)	229
HpyF3I	CTNAG	2 cut(s)	601, 624
HpySE526I	ACGT	1 cut(s)	527
Hsp92II	CATG	3 cut(s)	28, 390, 620
Kzo9I	GATC	2 cut(s)	291, 355
LpnPI	CCDG	7 cut(s)	18, 66, 101, 136, 157, 209, 443
Lsp1109I	GCAGC	2 cut(s)	216, 505
LweI	GCATC	1 cut(s)	457
MaeI	CTAG	4 cut(s)	38, 164, 215, 279
MaeII	ACGT	1 cut(s)	527
MaeIII	GTNAC	1 cut(s)	118
MalI	GATC	2 cut(s)	293, 357
MboI	GATC	2 cut(s)	291, 355
MboII	GAAGA	1 cut(s)	124
MfeI	CAATTG	1 cut(s)	549
MhlI	GDGCHC	3 cut(s)	171, 212, 564
MluCI	AATT	4 cut(s)	262, 391, 549, 580
MlyI	GAGTC	3 cut(s)	156, 386, 509
MnlI	CCTC	3 cut(s)	305, 319, 602
Mph1103I	ATGCAT	1 cut(s)	472
MseI	TTAA	5 cut(s)	65, 177, 341, 402, 473
MslI	CAYNNNNRTG	1 cut(s)	385
MspI	CCGG	1 cut(s)	123
MunI	CAATTG	1 cut(s)	549
Mva1269I	GAATGC	1 cut(s)	128
MwoI	GCNNNNNNNGC	1 cut(s)	229
NdeII	GATC	2 cut(s)	291, 355
NlaIII	CATG	3 cut(s)	28, 390, 620
NmuCI	GTSAC	1 cut(s)	118
NsiI	ATGCAT	1 cut(s)	472
PagI	TCATGA	1 cut(s)	616
PctI	GAATGC	1 cut(s)	128
PfeI	GAWTC	2 cut(s)	29, 160
PinAI	ACCGGT	1 cut(s)	122
PkrI	GCNGC	2 cut(s)	231, 520
PleI	GAGTC	3 cut(s)	155, 385, 508
PpsI	GAGTC	3 cut(s)	155, 385, 508
PshBI	ATTAAT	2 cut(s)	177, 473
RsaI	GTAC	1 cut(s)	303
RsaNI	GTAC	1 cut(s)	302
RseI	CAYNNNNRTG	1 cut(s)	385
SaqAI	TTAA	5 cut(s)	65, 177, 341, 402, 473
SatI	GCNGC	2 cut(s)	230, 519
Sau3AI	GATC	2 cut(s)	291, 355
SchI	GAGTC	3 cut(s)	156, 386, 509
SduI	GDGCHC	3 cut(s)	171, 212, 564
SetI	ASST	9 cut(s)	272, 280, 341, 411, 530, 537, 594, 602, 616
SfaNI	GCATC	1 cut(s)	457
SgrAI	CRCCGGYG	1 cut(s)	122
SmiMI	CAYNNNNRTG	1 cut(s)	385
SpeI	ACTAGT	1 cut(s)	37
Sse9I	AATT	4 cut(s)	262, 391, 549, 580
SsiI	CCGC	1 cut(s)	419
SspMI	CTAG	4 cut(s)	38, 164, 215, 279
StyI	CCWWGG	3 cut(s)	77, 444, 531
TaaI	ACNGT	3 cut(s)	63, 205, 301
TaiI	ACGT	1 cut(s)	530
TaqI	TCGA	2 cut(s)	266, 290
TasI	AATT	4 cut(s)	262, 391, 549, 580
TatI	WGTACW	1 cut(s)	301
TfiI	GAWTC	2 cut(s)	29, 160
Tru1I	TTAA	5 cut(s)	65, 177, 341, 402, 473
Tru9I	TTAA	5 cut(s)	65, 177, 341, 402, 473
TscAI	CASTG	2 cut(s)	208, 304
TseFI	GTSAC	1 cut(s)	118
TseI	GCWGC	2 cut(s)	229, 518
Tsp45I	GTSAC	1 cut(s)	118
TspGWI	ACGGA	1 cut(s)	179
TspRI	CASTG	2 cut(s)	208, 304
VspI	ATTAAT	2 cut(s)	177, 473
XapI	RAATTY	1 cut(s)	580
XbaI	TCTAGA	1 cut(s)	163
XspI	CTAG	4 cut(s)	38, 164, 215, 279
Zsp2I	ATGCAT	1 cut(s)	472

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.