Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr5B

Orthogroup ID

OG0009738

Physical Location & Seq

Genomic Coordinates Reverse (-)

33370230 .. 33371147

Gene Structure 918 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh5BG267100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 480 bp

ATGACTATTTTTTGGTTTAGTTTCTCGACGATGTTCTTCTCACATAGAGAGAACACTGTGAGCACTCTAGGACGGCTGGTGCTGATTATATGGTTGTTTGTGGTGTTGATTATCAATTCGAGCTATACAGCTAGTTTGACATCGATCCTCACTGTACAACAGATGACATCACGGATTGAGGGGATAAACAGCTTAATATCAAGTAATGATCCAATCGGAGTTCAAGATGCGTCATTTGCATGGAATTATTTGGTTAATAAGCTCAACATAGCGGAAGTTGTCAAAACAATGGTTGCCAAGGGATATGTTCTGGGACAAGATGCATTAATCAAGGGGATTTGTCAAAACAATGAGTCCTATCAAGTATCGGCTGCTACAACGTCCAAGGTTTATGAGTTAGCAATTGAATATGGGCTCATCAAGGCAAAAAAATTTTTCAATCACCTCAATAGCTCAGAGTATGTAGGTCATGATACTTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0004888 GO:0005215 GO:0005216 GO:0005261 GO:0005262 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006810 GO:0006811 GO:0006812 GO:0006816 GO:0006950 GO:0007154 GO:0007165 GO:0008066 GO:0008150 GO:0008324 GO:0009266 GO:0009409 GO:0009507 GO:0009536 GO:0009605 GO:0009611 GO:0009612 GO:0009628 GO:0009719 GO:0009987 GO:0010033 GO:0010034 GO:0010243 GO:0015075 GO:0015085 GO:0015267 GO:0015276 GO:0015318 GO:0016020 GO:0019722 GO:0019932 GO:0022803 GO:0022834 GO:0022836 GO:0022838 GO:0022839 GO:0022857 GO:0022890 GO:0023052 GO:0030001 GO:0033554 GO:0034220 GO:0035556 GO:0038023 GO:0042221 GO:0043200 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0046677 GO:0046873 GO:0050789 GO:0050794 GO:0050896 GO:0051179 GO:0051234 GO:0051716 GO:0055085 GO:0060089 GO:0065007 GO:0070417 GO:0070588 GO:0070838 GO:0070887 GO:0071214 GO:0071229 GO:0071230 GO:0071236 GO:0071260 GO:0071310 GO:0071311 GO:0071417 GO:0071495 GO:0071496 GO:0071944 GO:0072511 GO:0098655 GO:0098660 GO:0098662 GO:0104004 GO:1901698 GO:1901699 GO:1901700 GO:1901701

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

ANF_receptor Lig_chan SBP_bac_3

Protein Analysis

159

Amino Acids

17.79

Weight (kDa)

6.82

Isoelectric Point (pI)

23.06

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Lig_chan	PF00060	2 - 123	2.7e-23	Ligand-gated ion channel

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Orthologous Genes (Group: OG0009738)

Species	Orthologous Gene IDs
rosa_chinensis	RchiOBHm_Chr4g0392441
rosa_multiflora	Rmu_sc0004465.1_g000026 Rmu_sc0006576.1_g000023 Rmu_sc0007753.1_g000018
rosa_roxburghii	Rroxscaffold_1G00009700 Rroxscaffold_2G00130700 Rroxscaffold_4G00277550 Rroxscaffold_4G00309110 Rroxscaffold_4G00310040
rosa_samantha	Rh1DG085900 Rh1DG285100 Rh4AG080900 Rh4DG098600 Rh5BG267100 Rh5DG221200 Rh5DG273700 Rh5DG512300 Rh6AG030700 Rh6BG476200 Rh6CG512300 Rh6CG523800 Rh7AG262200

Restriction Enzyme Sites

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Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	272
AclWI	GGATC	2 cut(s)	139, 203
AcsI	RAATTY	1 cut(s)	431
AfaI	GTAC	1 cut(s)	156
AgsI	TTSAA	3 cut(s)	224, 407, 439
AluBI	AGCT	5 cut(s)	123, 131, 192, 262, 453
AluI	AGCT	5 cut(s)	123, 131, 192, 262, 453
Alw21I	GWGCWC	1 cut(s)	65
AlwI	GGATC	2 cut(s)	139, 203
ApeKI	GCWGC	1 cut(s)	371
ApoI	RAATTY	1 cut(s)	431
AseI	ATTAAT	1 cut(s)	326
AsuHPI	GGTGA	1 cut(s)	434
BanII	GRGCYC	1 cut(s)	417
Bbv12I	GWGCWC	1 cut(s)	65
BbvI	GCAGC	1 cut(s)	358
BceAI	ACGGC	1 cut(s)	89
BfaI	CTAG	2 cut(s)	68, 132
BisI	GCNGC	1 cut(s)	372
BlsI	GCNGC	1 cut(s)	373
BmsI	GCATC	2 cut(s)	217, 310
Bsa29I	ATCGAT	1 cut(s)	143
BsaJI	CCNNGG	2 cut(s)	297, 384
BseCI	ATCGAT	1 cut(s)	143
BseDI	CCNNGG	2 cut(s)	297, 384
BseMII	CTCAG	1 cut(s)	468
BseXI	GCAGC	1 cut(s)	358
BshVI	ATCGAT	1 cut(s)	143
BsiHKAI	GWGCWC	1 cut(s)	65
BslFI	GGGAC	1 cut(s)	327
BsmFI	GGGAC	1 cut(s)	327
Bsp1286I	GDGCHC	2 cut(s)	65, 417
Bsp1407I	TGTACA	1 cut(s)	154
Bsp143I	GATC	2 cut(s)	144, 208
BspACI	CCGC	1 cut(s)	272
BspCNI	CTCAG	1 cut(s)	467
BspDI	ATCGAT	1 cut(s)	143
BspHI	TCATGA	1 cut(s)	469
BspPI	GGATC	2 cut(s)	139, 203
BsrGI	TGTACA	1 cut(s)	154
BssECI	CCNNGG	2 cut(s)	297, 384
BssMI	GATC	2 cut(s)	144, 208
BssT1I	CCWWGG	2 cut(s)	297, 384
Bst4CI	ACNGT	2 cut(s)	58, 154
BstAUI	TGTACA	1 cut(s)	154
BstDEI	CTNAG	2 cut(s)	454, 477
BstKTI	GATC	2 cut(s)	147, 211
BstMBI	GATC	2 cut(s)	144, 208
BstMWI	GCNNNNNNNGC	1 cut(s)	236
BstV1I	GCAGC	1 cut(s)	358
Bsu15I	ATCGAT	1 cut(s)	143
BsuTUI	ATCGAT	1 cut(s)	143
BtsIMutI	CAGTG	2 cut(s)	54, 150
CciI	TCATGA	1 cut(s)	469
ClaI	ATCGAT	1 cut(s)	143
CseI	GACGC	1 cut(s)	219
Csp6I	GTAC	1 cut(s)	155
CviAII	CATG	2 cut(s)	240, 470
CviJI	RGCY	8 cut(s)	76, 123, 131, 192, 262, 371, 415, 453
CviKI_1	RGCY	8 cut(s)	76, 123, 131, 192, 262, 371, 415, 453
CviQI	GTAC	1 cut(s)	155
DdeI	CTNAG	2 cut(s)	454, 477
DpnI	GATC	2 cut(s)	146, 210
DpnII	GATC	2 cut(s)	144, 208
Eco130I	CCWWGG	2 cut(s)	297, 384
Eco24I	GRGCYC	1 cut(s)	417
EcoT14I	CCWWGG	2 cut(s)	297, 384
EcoT22I	ATGCAT	1 cut(s)	325
EcoT38I	GRGCYC	1 cut(s)	417
ErhI	CCWWGG	2 cut(s)	297, 384
FaeI	CATG	2 cut(s)	243, 473
FaqI	GGGAC	1 cut(s)	327
FatI	CATG	2 cut(s)	239, 469
Fnu4HI	GCNGC	1 cut(s)	372
FriOI	GRGCYC	1 cut(s)	417
Fsp4HI	GCNGC	1 cut(s)	372
FspBI	CTAG	2 cut(s)	68, 132
GluI	GCNGC	1 cut(s)	372
HgaI	GACGC	1 cut(s)	219
Hin1II	CATG	2 cut(s)	243, 473
HinfI	GANTC	1 cut(s)	353
HphI	GGTGA	1 cut(s)	434
Hpy188I	TCNGA	2 cut(s)	218, 457
Hpy188III	TCNNGA	3 cut(s)	25, 224, 470
Hpy99I	CGWCG	1 cut(s)	31
HpyCH4III	ACNGT	2 cut(s)	58, 154
HpyCH4IV	ACGT	1 cut(s)	380
HpyCH4V	TGCA	2 cut(s)	239, 323
HpyF10VI	GCNNNNNNNGC	1 cut(s)	236
HpyF3I	CTNAG	2 cut(s)	454, 477
HpySE526I	ACGT	1 cut(s)	380
Hsp92II	CATG	2 cut(s)	243, 473
Kzo9I	GATC	2 cut(s)	144, 208
LpnPI	CCDG	2 cut(s)	62, 296
Lsp1109I	GCAGC	1 cut(s)	358
LweI	GCATC	2 cut(s)	217, 310
MaeI	CTAG	2 cut(s)	68, 132
MaeII	ACGT	1 cut(s)	380
MalI	GATC	2 cut(s)	146, 210
MboI	GATC	2 cut(s)	144, 208
MboII	GAAGA	1 cut(s)	28
MfeI	CAATTG	1 cut(s)	402
MhlI	GDGCHC	2 cut(s)	65, 417
MluCI	AATT	4 cut(s)	115, 244, 402, 431
MlyI	GAGTC	1 cut(s)	362
MnlI	CCTC	3 cut(s)	158, 172, 455
Mph1103I	ATGCAT	1 cut(s)	325
MseI	TTAA	3 cut(s)	194, 255, 326
MslI	CAYNNNNRTG	1 cut(s)	238
MunI	CAATTG	1 cut(s)	402
MwoI	GCNNNNNNNGC	1 cut(s)	236
NdeII	GATC	2 cut(s)	144, 208
NlaIII	CATG	2 cut(s)	243, 473
NsiI	ATGCAT	1 cut(s)	325
PagI	TCATGA	1 cut(s)	469
PkrI	GCNGC	1 cut(s)	373
PleI	GAGTC	1 cut(s)	361
PpsI	GAGTC	1 cut(s)	361
PshBI	ATTAAT	1 cut(s)	326
RsaI	GTAC	1 cut(s)	156
RsaNI	GTAC	1 cut(s)	155
RseI	CAYNNNNRTG	1 cut(s)	238
SaqAI	TTAA	3 cut(s)	194, 255, 326
SatI	GCNGC	1 cut(s)	372
Sau3AI	GATC	2 cut(s)	144, 208
SchI	GAGTC	1 cut(s)	362
SduI	GDGCHC	2 cut(s)	65, 417
SetI	ASST	9 cut(s)	125, 133, 194, 264, 383, 390, 447, 455, 469
SfaNI	GCATC	2 cut(s)	217, 310
SmiMI	CAYNNNNRTG	1 cut(s)	238
Sse9I	AATT	4 cut(s)	115, 244, 402, 431
SsiI	CCGC	1 cut(s)	272
SspMI	CTAG	2 cut(s)	68, 132
StyI	CCWWGG	2 cut(s)	297, 384
TaaI	ACNGT	2 cut(s)	58, 154
TaiI	ACGT	1 cut(s)	383
TaqI	TCGA	3 cut(s)	26, 119, 143
TasI	AATT	4 cut(s)	115, 244, 402, 431
TatI	WGTACW	1 cut(s)	154
Tru1I	TTAA	3 cut(s)	194, 255, 326
Tru9I	TTAA	3 cut(s)	194, 255, 326
TscAI	CASTG	2 cut(s)	61, 157
TseI	GCWGC	1 cut(s)	371
TspGWI	ACGGA	1 cut(s)	187
TspRI	CASTG	2 cut(s)	61, 157
VspI	ATTAAT	1 cut(s)	326
XapI	RAATTY	1 cut(s)	431
XspI	CTAG	2 cut(s)	68, 132
Zsp2I	ATGCAT	1 cut(s)	325

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.