Rh6CG512300

RNA recognition motif

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0009738
Physical Location & Seq
Reverse (-)
67146797 .. 67155211
8415 bp
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UTR
Exon/CDS
Intron
Rh6CG512300.1

Sequence Viewer

Length: 414 bp
ATGATTGGGCCTGAGGTTGTGGCTGGATTTGGGTCTGACCTTCATGGGCCGCTGTCTTTGATTGGGCCTGTTCTTTTTGATTCAGGGTTGTATGATAATGCCAAGGGCTTGGGTGGCGTTTATGAGAAAGATGTGAGAAAGGCTCTTAACAGCAGATCTCAGAAGCTGAGGCTATTCACACAAGTCAGTTCATTTCTAGCTCTGGCAGTAATTGTTGCTGCGGAAGTTGTCAAAACAATGGTTGTCAAGGGATATGTTCTGGGACAAGATGCATTAATCAAGGGAATTTGTCAAAACAATGAGTCCTATCAAGTATCGGCAGCTGCAACATCCAAGGTTTATGAGTTAGCAATTGAATATGGCTCATCAAGGCAAAGAAGCTTTTCAATCACCTCAATAGCTCAGAGTATGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0003674 GO:0003676 GO:0003723 GO:0005488 GO:0097159 GO:1901363
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
RRM_1

Protein Analysis

137

Amino Acids

14.61

Weight (kDa)

8.71

Isoelectric Point (pI)

31.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 50, 221
AcsI RAATTY 1 cut(s) 285
AgsI TTSAA 2 cut(s) 356, 387
AluBI AGCT 5 cut(s) 166, 200, 323, 381, 401
AluI AGCT 5 cut(s) 166, 200, 323, 381, 401
AlwNI CAGNNNCTG 1 cut(s) 166
AoxI GGCC 3 cut(s) 8, 47, 65
ApeKI GCWGC 3 cut(s) 218, 320, 323
ApoI RAATTY 1 cut(s) 285
AseI ATTAAT 1 cut(s) 275
Asp700I GAANNNNTTC 1 cut(s) 382
AspS9I GGNCC 3 cut(s) 8, 47, 65
AsuHPI GGTGA 1 cut(s) 382
AxyI CCTNAGG 1 cut(s) 12
BbvCI CCTCAGC 1 cut(s) 167
BbvI GCAGC 3 cut(s) 205, 310, 332
BfaI CTAG 1 cut(s) 197
BglII AGATCT 1 cut(s) 155
BisI GCNGC 4 cut(s) 50, 219, 321, 324
BlsI GCNGC 4 cut(s) 51, 220, 322, 325
BmgT120I GGNCC 3 cut(s) 8, 47, 65
BmsI GCATC 1 cut(s) 259
BplI GAGNNNNNCTC 2 cut(s) 127, 159
Bpu10I CCTNAGC 1 cut(s) 167
BsaJI CCNNGG 2 cut(s) 102, 333
Bse21I CCTNAGG 1 cut(s) 12
BseDI CCNNGG 2 cut(s) 102, 333
BseGI GGATG 1 cut(s) 329
BseMII CTCAG 2 cut(s) 158, 173
BseXI GCAGC 3 cut(s) 205, 310, 332
BshFI GGCC 3 cut(s) 10, 49, 67
BslFI GGGAC 1 cut(s) 276
BsmFI GGGAC 1 cut(s) 276
BsnI GGCC 3 cut(s) 10, 49, 67
Bsp143I GATC 1 cut(s) 155
BspACI CCGC 2 cut(s) 50, 221
BspANI GGCC 3 cut(s) 10, 49, 67
BspCNI CTCAG 3 cut(s) 4, 159, 172
BssECI CCNNGG 2 cut(s) 102, 333
BssMI GATC 1 cut(s) 155
BssT1I CCWWGG 2 cut(s) 102, 333
BstDEI CTNAG 4 cut(s) 12, 159, 167, 402
BstF5I GGATG 1 cut(s) 329
BstKTI GATC 1 cut(s) 158
BstMBI GATC 1 cut(s) 155
BstMWI GCNNNNNNNGC 1 cut(s) 114
BstV1I GCAGC 3 cut(s) 205, 310, 332
BstX2I RGATCY 1 cut(s) 155
BstXI CCANNNNNNTGG 1 cut(s) 109
BstYI RGATCY 1 cut(s) 155
Bsu36I CCTNAGG 1 cut(s) 12
BsuRI GGCC 3 cut(s) 10, 49, 67
BtsCI GGATG 1 cut(s) 329
CaiI CAGNNNCTG 1 cut(s) 166
Cfr13I GGNCC 3 cut(s) 8, 47, 65
CviAII CATG 1 cut(s) 44
DdeI CTNAG 4 cut(s) 12, 159, 167, 402
DpnI GATC 1 cut(s) 157
DpnII GATC 1 cut(s) 155
Eco130I CCWWGG 2 cut(s) 102, 333
Eco81I CCTNAGG 1 cut(s) 12
EcoT14I CCWWGG 2 cut(s) 102, 333
EcoT22I ATGCAT 1 cut(s) 274
ErhI CCWWGG 2 cut(s) 102, 333
FaeI CATG 1 cut(s) 47
FaiI YATR 7 cut(s) 45, 93, 123, 255, 342, 360, 410
FaqI GGGAC 1 cut(s) 276
FatI CATG 1 cut(s) 43
Fnu4HI GCNGC 4 cut(s) 50, 219, 321, 324
FokI GGATG 1 cut(s) 316
Fsp4HI GCNGC 4 cut(s) 50, 219, 321, 324
FspBI CTAG 1 cut(s) 197
GluI GCNGC 4 cut(s) 50, 219, 321, 324
HaeIII GGCC 3 cut(s) 10, 49, 67
Hin1II CATG 1 cut(s) 47
HindIII AAGCTT 1 cut(s) 379
HinfI GANTC 2 cut(s) 80, 302
HphI GGTGA 1 cut(s) 382
Hpy188I TCNGA 3 cut(s) 37, 162, 405
HpyAV CCTTC 1 cut(s) 50
HpyCH4V TGCA 2 cut(s) 272, 326
HpyF10VI GCNNNNNNNGC 1 cut(s) 114
HpyF3I CTNAG 4 cut(s) 12, 159, 167, 402
Hsp92II CATG 1 cut(s) 47
Kzo9I GATC 1 cut(s) 155
LpnPI CCDG 6 cut(s) 9, 24, 69, 81, 188, 245
Lsp1109I GCAGC 3 cut(s) 205, 310, 332
LweI GCATC 1 cut(s) 259
MaeI CTAG 1 cut(s) 197
MalI GATC 1 cut(s) 157
MboI GATC 1 cut(s) 155
MfeI CAATTG 1 cut(s) 351
MflI RGATCY 1 cut(s) 155
MluCI AATT 3 cut(s) 210, 285, 351
MlyI GAGTC 1 cut(s) 311
MnlI CCTC 3 cut(s) 7, 162, 403
Mph1103I ATGCAT 1 cut(s) 274
MroXI GAANNNNTTC 1 cut(s) 382
MseI TTAA 2 cut(s) 147, 275
MspA1I CMGCKG 2 cut(s) 52, 323
MunI CAATTG 1 cut(s) 351
MwoI GCNNNNNNNGC 1 cut(s) 114
NdeII GATC 1 cut(s) 155
NlaIII CATG 1 cut(s) 47
NsiI ATGCAT 1 cut(s) 274
PdmI GAANNNNTTC 1 cut(s) 382
PfeI GAWTC 1 cut(s) 80
PkrI GCNGC 4 cut(s) 51, 220, 322, 325
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
PshBI ATTAAT 1 cut(s) 275
PspPI GGNCC 3 cut(s) 8, 47, 65
PstNI CAGNNNCTG 1 cut(s) 166
PsuI RGATCY 1 cut(s) 155
PvuII CAGCTG 1 cut(s) 323
SaqAI TTAA 2 cut(s) 147, 275
SatI GCNGC 4 cut(s) 50, 219, 321, 324
Sau3AI GATC 1 cut(s) 155
Sau96I GGNCC 3 cut(s) 8, 47, 65
SchI GAGTC 1 cut(s) 311
SetI ASST 9 cut(s) 18, 42, 168, 202, 325, 339, 383, 395, 403
SfaNI GCATC 1 cut(s) 259
Sse9I AATT 3 cut(s) 210, 285, 351
SsiI CCGC 2 cut(s) 50, 221
SspMI CTAG 1 cut(s) 197
StyI CCWWGG 2 cut(s) 102, 333
TasI AATT 3 cut(s) 210, 285, 351
TauI GCSGC 1 cut(s) 52
TfiI GAWTC 1 cut(s) 80
Tru1I TTAA 2 cut(s) 147, 275
Tru9I TTAA 2 cut(s) 147, 275
TseI GCWGC 3 cut(s) 218, 320, 323
TspDTI ATGAA 2 cut(s) 32, 180
VspI ATTAAT 1 cut(s) 275
XapI RAATTY 1 cut(s) 285
XmnI GAANNNNTTC 1 cut(s) 382
XspI CTAG 1 cut(s) 197
Zsp2I ATGCAT 1 cut(s) 274
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.