Rmu_sc0004598.1_g000014

RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0004598.1
OG0008898
Physical Location & Seq
Forward (+)
53759 .. 55722
1964 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 813 bp
atgatggtctctccggcggcagtctctctccgatccattaccacctttagcgacttgattatagtttcaggtttcacttctttctcactaaccgatccacttttcgacgtgtttgccgccttacgattattagaagcgagtttgcgaactcaaaatagaaaacaaagccattcaggtcactatttcaatctttccgacttcggttttagtttcagttggttagggtcaccacccaaattcgctttcccctctctgtcaaaaagccaaaacaaaagatgggactgggatagcagcggcgaattccgtggctggaagaagtggaatattccgtggtccaaaatacccacacaagatcgtgaagacttgttgtgggagctgtttgttcaagccggtcctgttgttaatgtgtatgttcccaaagatagagttatgaacctccatcaaggatacagatttgtggagttccgaagtgaagaggatgctgattacataagtttttgttttctcaagttattgtatagctccccgattcctgttaaagatgttatttctgactataaatttgttgttttgactgctatgcaggcagtcaaggtgcttaatatgatcaagctttacggaaagataattcatgtaaataaggtttatttggaggttccaaatggcgaagaattggcagtggcacttctaccatcgtgcttcagatcactagatggtgacgtcaccttttttgtgcagatatatgatgcaagttatgatgattttgttggatcatcgtcctacttattattaattctatcatcagttttatag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko03040 map03040
Pfam Domains
Protein Families
RRM_1

Protein Analysis

270

Amino Acids

30.83

Weight (kDa)

6.1

Isoelectric Point (pI)

47.82

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
RRM_1 PF00076 119 - 163 1.7e-07 RNA recognition motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 723
AciI CCGC 3 cut(s) 17, 117, 294
AclWI GGATC 3 cut(s) 27, 89, 778
AcsI RAATTY 3 cut(s) 236, 299, 560
AcuI CTGAAG 1 cut(s) 685
AcyI GRCGYC 1 cut(s) 720
AflIII ACRYGT 1 cut(s) 108
AgsI TTSAA 2 cut(s) 187, 386
AjiI CACGTC 1 cut(s) 109
AjuI GAANNNNNNNTTGG 2 cut(s) 227, 259
AluBI AGCT 3 cut(s) 376, 522, 613
AluI AGCT 3 cut(s) 376, 522, 613
Alw26I GTCTC 2 cut(s) 13, 28
AlwI GGATC 3 cut(s) 27, 89, 778
ApeKI GCWGC 1 cut(s) 291
ApoI RAATTY 3 cut(s) 236, 299, 560
ArsI GACNNNNNNTTYG 2 cut(s) 545, 577
AseI ATTAAT 1 cut(s) 791
AspS9I GGNCC 2 cut(s) 333, 392
AsuHPI GGTGA 3 cut(s) 219, 715, 728
AvaII GGWCC 2 cut(s) 333, 392
BbsI GAAGAC 1 cut(s) 366
BbvI GCAGC 1 cut(s) 303
BccI CCATC 4 cut(s) 270, 447, 700, 707
BcgI CGANNNNNNTGC 2 cut(s) 95, 129
BciVI GTATCC 1 cut(s) 440
BclI TGATCA 1 cut(s) 606
BcoDI GTCTC 2 cut(s) 13, 28
BfaI CTAG 1 cut(s) 710
BfuI GTATCC 1 cut(s) 440
BisI GCNGC 4 cut(s) 18, 117, 292, 295
BlsI GCNGC 4 cut(s) 19, 118, 293, 296
Bme18I GGWCC 2 cut(s) 333, 392
BmgBI CACGTC 1 cut(s) 109
BmgT120I GGNCC 2 cut(s) 333, 392
BmiI GGNNCC 1 cut(s) 657
BmrI ACTGGG 1 cut(s) 292
BmsI GCATC 2 cut(s) 469, 736
BmuI ACTGGG 1 cut(s) 292
BpiI GAAGAC 1 cut(s) 366
BpuEI CTTGAG 1 cut(s) 491
BsaHI GRCGYC 1 cut(s) 720
BsaI GGTCTC 1 cut(s) 13
BsaJI CCNNGG 2 cut(s) 304, 329
Bse118I RCCGGY 1 cut(s) 389
Bse1I ACTGG 1 cut(s) 287
BseDI CCNNGG 2 cut(s) 304, 329
BseGI GGATG 1 cut(s) 484
BseNI ACTGG 1 cut(s) 287
BseXI GCAGC 1 cut(s) 303
BsgI GTGCAG 1 cut(s) 755
BsiSI CCGG 2 cut(s) 14, 390
BslFI GGGAC 1 cut(s) 293
BsmAI GTCTC 2 cut(s) 13, 28
BsmFI GGGAC 1 cut(s) 293
Bso31I GGTCTC 1 cut(s) 13
Bsp143I GATC 6 cut(s) 32, 94, 352, 606, 704, 770
BspACI CCGC 3 cut(s) 17, 117, 294
BspLI GGNNCC 1 cut(s) 657
BspPI GGATC 3 cut(s) 27, 89, 778
BspTNI GGTCTC 1 cut(s) 13
BsrFI RCCGGY 1 cut(s) 389
BsrI ACTGG 1 cut(s) 287
BssAI RCCGGY 1 cut(s) 389
BssECI CCNNGG 2 cut(s) 304, 329
BssMI GATC 6 cut(s) 32, 94, 352, 606, 704, 770
BssNI GRCGYC 1 cut(s) 720
Bst6I CTCTTC 1 cut(s) 468
BstACI GRCGYC 1 cut(s) 720
BstC8I GCNNGC 1 cut(s) 585
BstDSI CCRYGG 2 cut(s) 304, 329
BstEII GGTNACC 1 cut(s) 225
BstF5I GGATG 1 cut(s) 484
BstKTI GATC 6 cut(s) 35, 97, 355, 609, 707, 773
BstMAI GTCTC 2 cut(s) 13, 28
BstMBI GATC 6 cut(s) 32, 94, 352, 606, 704, 770
BstMWI GCNNNNNNNGC 1 cut(s) 584
BstPI GGTNACC 1 cut(s) 225
BstV1I GCAGC 1 cut(s) 303
BstV2I GAAGAC 1 cut(s) 366
BsuI GTATCC 1 cut(s) 440
BtgI CCRYGG 2 cut(s) 304, 329
BtrI CACGTC 1 cut(s) 109
BtsCI GGATG 1 cut(s) 484
BtsI GCAGTG 1 cut(s) 684
BtsIMutI CAGTG 1 cut(s) 684
Cac8I GCNNGC 1 cut(s) 585
Cfr10I RCCGGY 1 cut(s) 389
Cfr13I GGNCC 2 cut(s) 333, 392
CviAII CATG 1 cut(s) 632
CviJI RGCY 7 cut(s) 168, 264, 309, 376, 389, 522, 613
CviKI_1 RGCY 7 cut(s) 168, 264, 309, 376, 389, 522, 613
DpnI GATC 6 cut(s) 34, 96, 354, 608, 706, 772
DpnII GATC 6 cut(s) 32, 94, 352, 606, 704, 770
Eam1104I CTCTTC 1 cut(s) 468
EarI CTCTTC 1 cut(s) 468
Eco31I GGTCTC 1 cut(s) 13
Eco47I GGWCC 2 cut(s) 333, 392
Eco57I CTGAAG 1 cut(s) 685
Eco91I GGTNACC 1 cut(s) 225
EcoO65I GGTNACC 1 cut(s) 225
EcoRI GAATTC 1 cut(s) 299
FaeI CATG 1 cut(s) 635
FaqI GGGAC 1 cut(s) 293
FatI CATG 1 cut(s) 631
FbaI TGATCA 1 cut(s) 606
Fnu4HI GCNGC 4 cut(s) 18, 117, 292, 295
FokI GGATG 1 cut(s) 491
Fsp4HI GCNGC 4 cut(s) 18, 117, 292, 295
FspBI CTAG 1 cut(s) 710
GluI GCNGC 4 cut(s) 18, 117, 292, 295
HapII CCGG 2 cut(s) 14, 390
Hin1I GRCGYC 1 cut(s) 720
Hin1II CATG 1 cut(s) 635
HindIII AAGCTT 1 cut(s) 611
HinfI GANTC 1 cut(s) 529
HpaII CCGG 2 cut(s) 14, 390
HphI GGTGA 3 cut(s) 219, 715, 728
Hpy188I TCNGA 5 cut(s) 32, 196, 467, 553, 704
Hpy188III TCNNGA 1 cut(s) 356
Hpy99I CGWCG 1 cut(s) 110
HpyCH4IV ACGT 2 cut(s) 108, 720
HpyCH4V TGCA 3 cut(s) 583, 736, 749
HpyF10VI GCNNNNNNNGC 1 cut(s) 584
HpySE526I ACGT 2 cut(s) 108, 720
Hsp92I GRCGYC 1 cut(s) 720
Hsp92II CATG 1 cut(s) 635
Ksp22I TGATCA 1 cut(s) 606
Kzo9I GATC 6 cut(s) 32, 94, 352, 606, 704, 770
LmnI GCTCC 2 cut(s) 373, 527
LpnPI CCDG 9 cut(s) 27, 54, 159, 268, 295, 403, 408, 546, 569
Lsp1109I GCAGC 1 cut(s) 303
LweI GCATC 2 cut(s) 469, 736
MaeI CTAG 1 cut(s) 710
MaeII ACGT 2 cut(s) 108, 720
MaeIII GTNAC 4 cut(s) 176, 225, 716, 721
MalI GATC 6 cut(s) 34, 96, 354, 608, 706, 772
MboI GATC 6 cut(s) 32, 94, 352, 606, 704, 770
MboII GAAGA 4 cut(s) 325, 371, 485, 680
MluCI AATT 6 cut(s) 236, 299, 560, 627, 671, 792
MmeI TCCRAC 2 cut(s) 219, 748
MnlI CCTC 4 cut(s) 259, 446, 469, 646
MseI TTAA 4 cut(s) 402, 537, 600, 791
MspA1I CMGCKG 1 cut(s) 294
MspI CCGG 2 cut(s) 14, 390
MwoI GCNNNNNNNGC 1 cut(s) 584
NdeII GATC 6 cut(s) 32, 94, 352, 606, 704, 770
NlaIII CATG 1 cut(s) 635
NlaIV GGNNCC 1 cut(s) 657
NmuCI GTSAC 4 cut(s) 176, 225, 716, 721
PfeI GAWTC 1 cut(s) 529
PkrI GCNGC 4 cut(s) 19, 118, 293, 296
PshBI ATTAAT 1 cut(s) 791
PspEI GGTNACC 1 cut(s) 225
PspN4I GGNNCC 1 cut(s) 657
PspPI GGNCC 2 cut(s) 333, 392
SaqAI TTAA 4 cut(s) 402, 537, 600, 791
SatI GCNGC 4 cut(s) 18, 117, 292, 295
Sau3AI GATC 6 cut(s) 32, 94, 352, 606, 704, 770
Sau96I GGNCC 2 cut(s) 333, 392
SfaNI GCATC 2 cut(s) 469, 736
SinI GGWCC 2 cut(s) 333, 392
SmlI CTYRAG 1 cut(s) 506
SmoI CTYRAG 1 cut(s) 506
Sse9I AATT 6 cut(s) 236, 299, 560, 627, 671, 792
SsiI CCGC 3 cut(s) 17, 117, 294
SspI AATATT 1 cut(s) 325
SspMI CTAG 1 cut(s) 710
TaiI ACGT 2 cut(s) 111, 723
TaqI TCGA 1 cut(s) 105
TasI AATT 6 cut(s) 236, 299, 560, 627, 671, 792
TauI GCSGC 3 cut(s) 20, 119, 297
TfiI GAWTC 1 cut(s) 529
Tru1I TTAA 4 cut(s) 402, 537, 600, 791
Tru9I TTAA 4 cut(s) 402, 537, 600, 791
TscAI CASTG 1 cut(s) 684
TseFI GTSAC 4 cut(s) 176, 225, 716, 721
TseI GCWGC 1 cut(s) 291
Tsp45I GTSAC 4 cut(s) 176, 225, 716, 721
TspDTI ATGAA 2 cut(s) 446, 620
TspGWI ACGGA 3 cut(s) 293, 318, 633
TspRI CASTG 1 cut(s) 684
VpaK11BI GGWCC 2 cut(s) 333, 392
VspI ATTAAT 1 cut(s) 791
XapI RAATTY 3 cut(s) 236, 299, 560
XspI CTAG 1 cut(s) 710
ZraI GACGTC 1 cut(s) 721
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.