Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0004983.1

Orthogroup ID

OG0006646

Physical Location & Seq

Genomic Coordinates Reverse (-)

352 .. 3999

Gene Structure 3648 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1053 bp

atgcagcagcatcggggcaggaggctgcaggtcgtgcggattgggcaggggcgctggtcgtgcggcagatggctgggctgcagtaggaggcctgtgagcggaggagcagggcgagcagcaggggcgtgctgggctgcgggctggtgtgcagcgcgggctgcagagaggcggctgaagggctgcaggcaggtgcacagtaggagtgctgcaggttgtaggaggcggacttgctgcagtgggctgctggccgagctagggtttagggaggagaggactgcggcagattttgtgagagatatcgcagagacgagtacagtagccataatcctcttttgctgccgccaagtatttggttacctatttaccaatgaggaagaagtaattgattatgtcagaattatggctcctctgctttgcctatctgttatactagacagcttgcagggggtcctttcaggtatatctagaggatgtgggtggcagcatataggggcttacataaatcttggggcatattatttatgtgggattccagttgctgctacattggctttcttgttaactggtcctggatcagtagaagttaataaggcagctgatcttgttgctgctcgggcttcacggcaggagtgcccttcagattgccttcaaatcccagaaaccaccgccacccaccttgaagatctcaactccaggagtccagaaccggcggccctgcccccagaaccggccggaaaatatccgaaccggccaccggaaatatctttaccctccctgcccggttcgaagctttcctccctgccaactgctaccaaacttcactggaacctgcaaccagaccccagatcaccggagccgaaaaatatccaccggaaccggcctataaccgtccgaaccggcaaccggaaaagacgaagacctgaaccggcaaccggaaaagacgaagacctgaaccggcagaaacaagaaaaaaaaaaaggaaagagaagaacgcctgcagcccaagcccgcctgcagcccagcgaaacccacttgcaaacccaagccgcatag

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005215 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006810 GO:0006855 GO:0008150 GO:0009507 GO:0009536 GO:0015238 GO:0015893 GO:0022857 GO:0042221 GO:0042493 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0051179 GO:0051234 GO:0055085

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

MatE

Protein Analysis

350

Amino Acids

38.37

Weight (kDa)

9.83

Isoelectric Point (pI)

75.9

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
MatE	PF01554	106 - 181	5.1e-12	MatE

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006646)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G31180 AT1G31180 AT1G80560 AT5G14200 AT5G14200
fragaria_vesca	FvH4_2g04971
malus_domestica	MD17G1218700.v1.1
prunus_persica	Prupe.3G094300_v2.0.a1 Prupe.3G094300_v2.0.a1
pyrus_communis	pycom17g22270 pycom17g22330
rosa_chinensis	RchiOBHm_Chr2g0133781 RchiOBHm_Chr2g0133821
rosa_laevigata	RLG00000019364
rosa_multiflora	Rmu_sc0001782.1_g000049 Rmu_sc0001782.1_g000053 Rmu_sc0003682.1_g000003 Rmu_sc0004983.1_g000001
rosa_roxburghii	Rroxscaffold_2G00110790 Rroxscaffold_2G00110820
rosa_rugosa	Rorug02G0313900
rosa_samantha	Rh2AG367200 Rh2CG350300 Rh2CG350600 Rh2DG389700
rosa_wichuraiana	Rw2G029860

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	178
Acc36I	ACCTGC	4 cut(s)	19, 178, 200, 837
AccBSI	CCGCTC	1 cut(s)	99
AccII	CGCG	1 cut(s)	154
AclWI	GGATC	1 cut(s)	580
AcoI	YGGCCR	3 cut(s)	246, 729, 749
AcuI	CTGAAG	2 cut(s)	194, 621
AfaI	GTAC	1 cut(s)	313
AfiI	CCNNNNNNNGG	6 cut(s)	98, 255, 727, 754, 903, 932
AgsI	TTSAA	2 cut(s)	650, 680
AjnI	CCWGG	2 cut(s)	568, 692
AluBI	AGCT	4 cut(s)	253, 438, 596, 790
AluI	AGCT	4 cut(s)	253, 438, 596, 790
Alw21I	GWGCWC	1 cut(s)	195
Alw26I	GTCTC	1 cut(s)	299
Alw44I	GTGCAC	1 cut(s)	191
AlwI	GGATC	1 cut(s)	580
AlwNI	CAGNNNCTG	1 cut(s)	539
Ama87I	CYCGRG	1 cut(s)	612
AoxI	GGCC	6 cut(s)	89, 246, 711, 729, 749, 878
ApaLI	GTGCAC	1 cut(s)	191
AspLEI	GCGC	2 cut(s)	54, 154
AspS9I	GGNCC	3 cut(s)	448, 566, 712
AsuC2I	CCSGG	1 cut(s)	780
AsuHPI	GGTGA	1 cut(s)	840
AsuII	TTCGAA	1 cut(s)	785
AvaI	CYCGRG	1 cut(s)	612
AvaII	GGWCC	2 cut(s)	448, 566
BaeGI	GKGCMC	2 cut(s)	195, 635
BbsI	GAAGAC	2 cut(s)	922, 951
Bbv12I	GWGCWC	1 cut(s)	195
BccI	CCATC	1 cut(s)	63
BceAI	ACGGC	1 cut(s)	638
BcgI	CGANNNNNNTGC	1 cut(s)	27
BciT130I	CCWGG	2 cut(s)	570, 694
BcnI	CCSGG	1 cut(s)	780
BcoDI	GTCTC	1 cut(s)	299
BfaI	CTAG	3 cut(s)	254, 431, 465
BfmI	CTRYAG	8 cut(s)	26, 79, 159, 181, 207, 232, 996, 1013
BfoI	RGCGCY	1 cut(s)	55
BfuAI	ACCTGC	4 cut(s)	19, 178, 200, 837
BglII	AGATCT	1 cut(s)	682
Bme1390I	CCNGG	3 cut(s)	570, 694, 780
Bme18I	GGWCC	2 cut(s)	448, 566
BmeT110I	CYCGRG	1 cut(s)	612
BmgT120I	GGNCC	3 cut(s)	448, 566, 712
BmiI	GGNNCC	5 cut(s)	405, 449, 827, 855, 875
BmrFI	CCNGG	3 cut(s)	570, 694, 780
BmsI	GCATC	1 cut(s)	19
BpiI	GAAGAC	2 cut(s)	922, 951
BpmI	CTGGAG	1 cut(s)	676
Bpu14I	TTCGAA	1 cut(s)	785
BpuMI	CCSGG	1 cut(s)	780
BsaWI	WCCGGW	5 cut(s)	754, 850, 870, 903, 932
Bsc4I	CCNNNNNNNGG	6 cut(s)	98, 255, 727, 754, 903, 932
Bse118I	RCCGGY	7 cut(s)	706, 727, 747, 876, 896, 925, 954
Bse1I	ACTGG	3 cut(s)	533, 568, 827
BseBI	CCWGG	2 cut(s)	570, 694
BseGI	GGATG	1 cut(s)	476
BseLI	CCNNNNNNNGG	6 cut(s)	98, 255, 727, 754, 903, 932
BseNI	ACTGG	3 cut(s)	533, 568, 827
BseRI	GAGGAG	3 cut(s)	117, 281, 396
BseSI	GKGCMC	2 cut(s)	195, 635
BseX3I	CGGCCG	1 cut(s)	729
BseYI	CCCAGC	3 cut(s)	73, 129, 1019
BsgI	GTGCAG	1 cut(s)	168
Bsh1236I	CGCG	1 cut(s)	154
Bsh1285I	CGRYCG	1 cut(s)	732
BshFI	GGCC	6 cut(s)	91, 248, 713, 731, 751, 880
BsiEI	CGRYCG	1 cut(s)	732
BsiHKAI	GWGCWC	1 cut(s)	195
BsiHKCI	CYCGRG	1 cut(s)	612
BslI	CCNNNNNNNGG	6 cut(s)	98, 255, 727, 754, 903, 932
BsmAI	GTCTC	1 cut(s)	299
BsmBI	CGTCTC	1 cut(s)	299
BsnI	GGCC	6 cut(s)	91, 248, 713, 731, 751, 880
BsoBI	CYCGRG	1 cut(s)	612
Bsp119I	TTCGAA	1 cut(s)	785
Bsp1286I	GDGCHC	2 cut(s)	195, 635
Bsp143I	GATC	4 cut(s)	572, 598, 682, 845
BspANI	GGCC	6 cut(s)	91, 248, 713, 731, 751, 880
BspFNI	CGCG	1 cut(s)	154
BspLI	GGNNCC	5 cut(s)	405, 449, 827, 855, 875
BspMAI	CTGCAG	8 cut(s)	30, 83, 163, 185, 211, 236, 1000, 1017
BspMI	ACCTGC	4 cut(s)	19, 178, 200, 837
BspPI	GGATC	1 cut(s)	580
BspT104I	TTCGAA	1 cut(s)	785
BsrBI	CCGCTC	1 cut(s)	99
BsrFI	RCCGGY	7 cut(s)	706, 727, 747, 876, 896, 925, 954
BsrI	ACTGG	3 cut(s)	533, 568, 827
BssAI	RCCGGY	7 cut(s)	706, 727, 747, 876, 896, 925, 954
BssMI	GATC	4 cut(s)	572, 598, 682, 845
Bst2UI	CCWGG	2 cut(s)	570, 694
Bst4CI	ACNGT	3 cut(s)	197, 316, 889
BstAPI	GCANNNNNTGC	1 cut(s)	34
BstBI	TTCGAA	1 cut(s)	785
BstEII	GGTNACC	1 cut(s)	353
BstF5I	GGATG	1 cut(s)	476
BstFNI	CGCG	1 cut(s)	154
BstH2I	RGCGCY	1 cut(s)	55
BstHHI	GCGC	2 cut(s)	54, 154
BstKTI	GATC	4 cut(s)	575, 601, 685, 848
BstMAI	GTCTC	1 cut(s)	299
BstMBI	GATC	4 cut(s)	572, 598, 682, 845
BstMCI	CGRYCG	1 cut(s)	732
BstNI	CCWGG	2 cut(s)	570, 694
BstPI	GGTNACC	1 cut(s)	353
BstSCI	CCNGG	3 cut(s)	568, 692, 778
BstSFI	CTRYAG	8 cut(s)	26, 79, 159, 181, 207, 232, 996, 1013
BstSLI	GKGCMC	2 cut(s)	195, 635
BstUI	CGCG	1 cut(s)	154
BstV2I	GAAGAC	2 cut(s)	922, 951
BstX2I	RGATCY	1 cut(s)	682
BstXI	CCANNNNNNTGG	1 cut(s)	350
BstYI	RGATCY	1 cut(s)	682
BstZI	CGGCCG	1 cut(s)	729
BsuRI	GGCC	6 cut(s)	91, 248, 713, 731, 751, 880
BtsCI	GGATG	1 cut(s)	476
BtsI	GCAGTG	1 cut(s)	241
BtsIMutI	CAGTG	2 cut(s)	241, 820
BveI	ACCTGC	4 cut(s)	19, 178, 200, 837
CaiI	CAGNNNCTG	1 cut(s)	539
CfoI	GCGC	2 cut(s)	54, 154
Cfr10I	RCCGGY	7 cut(s)	706, 727, 747, 876, 896, 925, 954
Cfr13I	GGNCC	3 cut(s)	448, 566, 712
Csp6I	GTAC	1 cut(s)	312
CspCI	CAANNNNNGTGG	2 cut(s)	658, 693
CviQI	GTAC	1 cut(s)	312
DpnI	GATC	4 cut(s)	574, 600, 684, 847
DpnII	GATC	4 cut(s)	572, 598, 682, 845
EaeI	YGGCCR	3 cut(s)	246, 729, 749
EagI	CGGCCG	1 cut(s)	729
EciI	GGCGGA	1 cut(s)	238
EclXI	CGGCCG	1 cut(s)	729
Eco147I	AGGCCT	1 cut(s)	91
Eco32I	GATATC	1 cut(s)	298
Eco47I	GGWCC	2 cut(s)	448, 566
Eco52I	CGGCCG	1 cut(s)	729
Eco57I	CTGAAG	2 cut(s)	194, 621
Eco88I	CYCGRG	1 cut(s)	612
Eco91I	GGTNACC	1 cut(s)	353
EcoO109I	RGGNCCY	1 cut(s)	448
EcoO65I	GGTNACC	1 cut(s)	353
EcoRII	CCWGG	2 cut(s)	568, 692
EcoRV	GATATC	1 cut(s)	298
Esp3I	CGTCTC	1 cut(s)	299
FauI	CCCGC	3 cut(s)	130, 147, 1016
FokI	GGATG	1 cut(s)	483
FspBI	CTAG	3 cut(s)	254, 431, 465
GlaI	GCGC	2 cut(s)	53, 153
GsaI	CCCAGC	3 cut(s)	77, 133, 1023
GsuI	CTGGAG	1 cut(s)	676
HaeII	RGCGCY	1 cut(s)	55
HaeIII	GGCC	6 cut(s)	91, 248, 713, 731, 751, 880
HhaI	GCGC	2 cut(s)	54, 154
Hin6I	GCGC	2 cut(s)	52, 152
HinP1I	GCGC	2 cut(s)	52, 152
HincII	GTYRAC	1 cut(s)	561
HindII	GTYRAC	1 cut(s)	561
HindIII	AAGCTT	1 cut(s)	788
HinfI	GANTC	2 cut(s)	529, 697
HpaI	GTTAAC	1 cut(s)	561
HphI	GGTGA	1 cut(s)	840
Hpy166II	GTNNAC	2 cut(s)	193, 561
Hpy188I	TCNGA	4 cut(s)	395, 640, 744, 893
Hpy188III	TCNNGA	2 cut(s)	465, 701
Hpy8I	GTNNAC	2 cut(s)	193, 561
HpyAV	CCTTC	3 cut(s)	169, 645, 656
HpyCH4III	ACNGT	3 cut(s)	197, 316, 889
HspAI	GCGC	2 cut(s)	52, 152
KspAI	GTTAAC	1 cut(s)	561
Kzo9I	GATC	4 cut(s)	572, 598, 682, 845
LmnI	GCTCC	3 cut(s)	104, 409, 853
LweI	GCATC	1 cut(s)	19
MaeI	CTAG	3 cut(s)	254, 431, 465
MaeIII	GTNAC	1 cut(s)	353
MalI	GATC	4 cut(s)	574, 600, 684, 847
MbiI	CCGCTC	1 cut(s)	99
MboI	GATC	4 cut(s)	572, 598, 682, 845
MboII	GAAGA	5 cut(s)	386, 692, 927, 956, 999
MflI	RGATCY	1 cut(s)	682
MhlI	GDGCHC	2 cut(s)	195, 635
MluCI	AATT	2 cut(s)	381, 396
MlyI	GAGTC	1 cut(s)	706
MseI	TTAA	2 cut(s)	560, 585
MspA1I	CMGCKG	1 cut(s)	596
MspR9I	CCNGG	3 cut(s)	570, 694, 780
MvaI	CCWGG	2 cut(s)	570, 694
MvnI	CGCG	1 cut(s)	154
NciI	CCSGG	1 cut(s)	780
NdeII	GATC	4 cut(s)	572, 598, 682, 845
NlaIV	GGNNCC	5 cut(s)	405, 449, 827, 855, 875
NmeAIII	GCCGAG	1 cut(s)	274
NspV	TTCGAA	1 cut(s)	785
PaqCI	CACCTGC	1 cut(s)	178
PceI	AGGCCT	1 cut(s)	91
PfeI	GAWTC	1 cut(s)	529
PfoI	TCCNGGA	2 cut(s)	568, 692
PleI	GAGTC	1 cut(s)	705
PpsI	GAGTC	1 cut(s)	705
PpuMI	RGGWCCY	1 cut(s)	448
Psp5II	RGGWCCY	1 cut(s)	448
Psp6I	CCWGG	2 cut(s)	568, 692
PspEI	GGTNACC	1 cut(s)	353
PspFI	CCCAGC	3 cut(s)	73, 129, 1019
PspGI	CCWGG	2 cut(s)	568, 692
PspN4I	GGNNCC	5 cut(s)	405, 449, 827, 855, 875
PspPI	GGNCC	3 cut(s)	448, 566, 712
PspPPI	RGGWCCY	1 cut(s)	448
PstI	CTGCAG	8 cut(s)	30, 83, 163, 185, 211, 236, 1000, 1017
PstNI	CAGNNNCTG	1 cut(s)	539
PsuI	RGATCY	1 cut(s)	682
PvuII	CAGCTG	1 cut(s)	596
RsaI	GTAC	1 cut(s)	313
RsaNI	GTAC	1 cut(s)	312
SaqAI	TTAA	2 cut(s)	560, 585
Sau3AI	GATC	4 cut(s)	572, 598, 682, 845
Sau96I	GGNCC	3 cut(s)	448, 566, 712
SchI	GAGTC	1 cut(s)	706
ScrFI	CCNGG	3 cut(s)	570, 694, 780
SduI	GDGCHC	2 cut(s)	195, 635
SfaNI	GCATC	1 cut(s)	19
SfcI	CTRYAG	8 cut(s)	26, 79, 159, 181, 207, 232, 996, 1013
SfuI	TTCGAA	1 cut(s)	785
SinI	GGWCC	2 cut(s)	448, 566
Sse9I	AATT	2 cut(s)	381, 396
SseBI	AGGCCT	1 cut(s)	91
SspMI	CTAG	3 cut(s)	254, 431, 465
StuI	AGGCCT	1 cut(s)	91
StyD4I	CCNGG	3 cut(s)	568, 692, 778
TaaI	ACNGT	3 cut(s)	197, 316, 889
TaqI	TCGA	1 cut(s)	785
TasI	AATT	2 cut(s)	381, 396
TatI	WGTACW	1 cut(s)	311
TauI	GCSGC	6 cut(s)	66, 172, 281, 342, 713, 1049
TfiI	GAWTC	1 cut(s)	529
Tru1I	TTAA	2 cut(s)	560, 585
Tru9I	TTAA	2 cut(s)	560, 585
TscAI	CASTG	2 cut(s)	241, 827
TspRI	CASTG	2 cut(s)	241, 827
VneI	GTGCAC	1 cut(s)	191
VpaK11BI	GGWCC	2 cut(s)	448, 566
XbaI	TCTAGA	1 cut(s)	464
XspI	CTAG	3 cut(s)	254, 431, 465

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.