Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0005177.1

Orthogroup ID

OG0002620

Physical Location & Seq

Genomic Coordinates Reverse (-)

1 .. 1075

Gene Structure 1075 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

N/A

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

atggaggatgatggctcagcccccagacactcatgcttaaagctggaatccagagaatctcaacccatcttcgtcaagggcacatggttcgagtcccgcttcgaactctccatcacggacgacctcaacgcctgggtctgccatgcctccgaagacgcggttagagaccgagcctcccagtgggaccagccagtatccgagtacgtctcattagccgagcgctatttaggttccaacactctgcttccgtctatggattcattgatgccggcgatggccacagaaggggatgaagctagaatggcggtggaagtgtcagtaaggaaacaacagctgcatctagtgttggattttctgatggatgcaaatgttgggctaagt

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000726 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006139 GO:0006259 GO:0006281 GO:0006302 GO:0006303 GO:0006725 GO:0006807 GO:0006950 GO:0006974 GO:0008150 GO:0008152 GO:0009987 GO:0033554 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044237 GO:0044238 GO:0044260 GO:0044424 GO:0044464 GO:0046483 GO:0050896 GO:0051716 GO:0071704 GO:0090304 GO:1901360

KEGG Pathways

Metabolic & Signaling

ko03450 map03450

Pfam Domains

Protein Families

XRCC4

Protein Analysis

127

Amino Acids

14.26

Weight (kDa)

4.51

Isoelectric Point (pI)

48.74

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
XRCC4	PF06632	22 - 79	2.3e-17	XRCC4 N-terminal domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0002620)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT1G61410 AT3G23100 AT3G23100
fragaria_vesca	FvH4_2g07190 FvH4_2g07190
malus_domestica	MD13G1208000.v1.1
prunus_persica	Prupe.1G031500_v2.0.a1 Prupe.1G031500_v2.0.a1 Prupe.1G031500_v2.0.a1
pyrus_communis	pycom13g18010
rosa_chinensis	RchiOBHm_Chr1g0323991
rosa_laevigata	RLG00000030236
rosa_multiflora	Rmu_sc0001861.1_g000102 Rmu_sc0002529.1_g000031 Rmu_sc0003452.1_g000009 Rmu_sc0005177.1_g000001 Rmu_sc0006175.1_g000019
rosa_roxburghii	Rroxscaffold_160G00433790 Rroxscaffold_2G00104220 Rroxscaffold_4G00325990 Rroxscaffold_4G00328010 Rroxscaffold_4G00328020
rosa_rugosa	Rorug01G0031900 Rorug01G0041300 Rorug03G0294600
rosa_samantha	Rh1AG043800 Rh1AG059000 Rh1BG041300 Rh1CG046300 Rh1CG061100 Rh1DG051000 Rh1DG065200 Rh4BG282000 Rh5AG329500 Rh7AG348000 Rh7CG365400 Rh7CG365500
rosa_wichuraiana	Rw1G003850 Rw1G005060 Rw4G020960

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	158
AciI	CCGC	3 cut(s)	97, 158, 305
AcoI	YGGCCR	1 cut(s)	276
AfaI	GTAC	1 cut(s)	203
AfeI	AGCGCT	1 cut(s)	221
AfiI	CCNNNNNNNGG	2 cut(s)	180, 285
AjnI	CCWGG	1 cut(s)	131
AluBI	AGCT	3 cut(s)	43, 296, 334
AluI	AGCT	3 cut(s)	43, 296, 334
Alw26I	GTCTC	2 cut(s)	159, 211
Aor51HI	AGCGCT	1 cut(s)	221
AoxI	GGCC	1 cut(s)	276
ApeKI	GCWGC	1 cut(s)	334
AspLEI	GCGC	1 cut(s)	222
AspS9I	GGNCC	1 cut(s)	184
AsuII	TTCGAA	1 cut(s)	102
AvaII	GGWCC	1 cut(s)	184
BaeGI	GKGCMC	1 cut(s)	83
BalI	TGGCCA	1 cut(s)	278
BbsI	GAAGAC	1 cut(s)	159
BbvI	GCAGC	1 cut(s)	321
BccI	CCATC	5 cut(s)	5, 74, 119, 268, 352
BcgI	CGANNNNNNTGC	2 cut(s)	70, 104
BciT130I	CCWGG	1 cut(s)	133
BciVI	GTATCC	1 cut(s)	205
BcoDI	GTCTC	2 cut(s)	159, 211
BfaI	CTAG	2 cut(s)	297, 341
BfoI	RGCGCY	1 cut(s)	223
BfuI	GTATCC	1 cut(s)	205
BisI	GCNGC	1 cut(s)	335
BlpI	GCTNAGC	1 cut(s)	16
BlsI	GCNGC	1 cut(s)	336
Bme1390I	CCNGG	1 cut(s)	133
Bme18I	GGWCC	1 cut(s)	184
BmgT120I	GGNCC	1 cut(s)	184
BmiI	GGNNCC	2 cut(s)	185, 232
BmrFI	CCNGG	1 cut(s)	133
BmrI	ACTGGG	1 cut(s)	172
BmsI	GCATC	3 cut(s)	255, 346, 352
BmuI	ACTGGG	1 cut(s)	172
BpiI	GAAGAC	1 cut(s)	159
BplI	GAGNNNNNCTC	2 cut(s)	191, 223
Bpu1102I	GCTNAGC	1 cut(s)	16
Bpu14I	TTCGAA	1 cut(s)	102
BsaI	GGTCTC	1 cut(s)	159
BsaJI	CCNNGG	1 cut(s)	132
BsaXI	ACNNNNNCTCC	2 cut(s)	158, 188
Bsc4I	CCNNNNNNNGG	2 cut(s)	180, 285
Bse118I	RCCGGY	1 cut(s)	268
Bse1I	ACTGG	2 cut(s)	178, 191
BseBI	CCWGG	1 cut(s)	133
BseDI	CCNNGG	1 cut(s)	132
BseGI	GGATG	3 cut(s)	13, 295, 367
BseLI	CCNNNNNNNGG	2 cut(s)	180, 285
BseMII	CTCAG	1 cut(s)	30
BseNI	ACTGG	2 cut(s)	178, 191
BseSI	GKGCMC	1 cut(s)	83
BseXI	GCAGC	1 cut(s)	321
Bsh1236I	CGCG	1 cut(s)	158
BshFI	GGCC	1 cut(s)	278
BsiSI	CCGG	1 cut(s)	269
BslFI	GGGAC	2 cut(s)	79, 197
BslI	CCNNNNNNNGG	2 cut(s)	180, 285
BsmAI	GTCTC	2 cut(s)	159, 211
BsmBI	CGTCTC	1 cut(s)	211
BsmFI	GGGAC	2 cut(s)	79, 197
BsnI	GGCC	1 cut(s)	278
Bso31I	GGTCTC	1 cut(s)	159
Bsp119I	TTCGAA	1 cut(s)	102
Bsp1286I	GDGCHC	1 cut(s)	83
Bsp1720I	GCTNAGC	1 cut(s)	16
BspACI	CCGC	3 cut(s)	97, 158, 305
BspANI	GGCC	1 cut(s)	278
BspCNI	CTCAG	1 cut(s)	29
BspFNI	CGCG	1 cut(s)	158
BspLI	GGNNCC	2 cut(s)	185, 232
BspT104I	TTCGAA	1 cut(s)	102
BspTNI	GGTCTC	1 cut(s)	159
BsrFI	RCCGGY	1 cut(s)	268
BsrI	ACTGG	2 cut(s)	178, 191
BssAI	RCCGGY	1 cut(s)	268
BssECI	CCNNGG	1 cut(s)	132
Bst2UI	CCWGG	1 cut(s)	133
BstBI	TTCGAA	1 cut(s)	102
BstC8I	GCNNGC	1 cut(s)	270
BstDEI	CTNAG	2 cut(s)	16, 377
BstF5I	GGATG	3 cut(s)	13, 295, 367
BstFNI	CGCG	1 cut(s)	158
BstH2I	RGCGCY	1 cut(s)	223
BstHHI	GCGC	1 cut(s)	222
BstMAI	GTCTC	2 cut(s)	159, 211
BstMWI	GCNNNNNNNGC	1 cut(s)	302
BstNI	CCWGG	1 cut(s)	133
BstSCI	CCNGG	1 cut(s)	131
BstSLI	GKGCMC	1 cut(s)	83
BstUI	CGCG	1 cut(s)	158
BstV1I	GCAGC	1 cut(s)	321
BstV2I	GAAGAC	1 cut(s)	159
BsuI	GTATCC	1 cut(s)	205
BsuRI	GGCC	1 cut(s)	278
BtgZI	GCGATG	1 cut(s)	287
BtsCI	GGATG	3 cut(s)	13, 295, 367
BtsIMutI	CAGTG	1 cut(s)	185
Cac8I	GCNNGC	1 cut(s)	270
CfoI	GCGC	1 cut(s)	222
Cfr10I	RCCGGY	1 cut(s)	268
Cfr13I	GGNCC	1 cut(s)	184
CseI	GACGC	1 cut(s)	164
Csp6I	GTAC	1 cut(s)	202
CviAII	CATG	3 cut(s)	33, 84, 143
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	2 cut(s)	16, 377
EaeI	YGGCCR	1 cut(s)	276
Eco31I	GGTCTC	1 cut(s)	159
Eco47I	GGWCC	1 cut(s)	184
Eco47III	AGCGCT	1 cut(s)	221
EcoRII	CCWGG	1 cut(s)	131
Esp3I	CGTCTC	1 cut(s)	211
FaeI	CATG	3 cut(s)	36, 87, 146
FaiI	YATR	4 cut(s)	34, 85, 144, 254
FaqI	GGGAC	2 cut(s)	79, 197
FatI	CATG	3 cut(s)	32, 83, 142
FauI	CCCGC	1 cut(s)	104
Fnu4HI	GCNGC	1 cut(s)	335
FokI	GGATG	3 cut(s)	20, 302, 374
Fsp4HI	GCNGC	1 cut(s)	335
FspBI	CTAG	2 cut(s)	297, 341
GlaI	GCGC	1 cut(s)	221
GluI	GCNGC	1 cut(s)	335
HaeII	RGCGCY	1 cut(s)	223
HaeIII	GGCC	1 cut(s)	278
HapII	CCGG	1 cut(s)	269
HgaI	GACGC	1 cut(s)	164
HhaI	GCGC	1 cut(s)	222
Hin1II	CATG	3 cut(s)	36, 87, 146
Hin6I	GCGC	1 cut(s)	220
HinP1I	GCGC	1 cut(s)	220
HinfI	GANTC	4 cut(s)	47, 56, 92, 257
HpaII	CCGG	1 cut(s)	269
Hpy188I	TCNGA	3 cut(s)	151, 199, 357
Hpy188III	TCNNGA	1 cut(s)	51
HpyAV	CCTTC	1 cut(s)	278
HpyCH4IV	ACGT	1 cut(s)	204
HpyCH4V	TGCA	2 cut(s)	337, 365
HpyF10VI	GCNNNNNNNGC	1 cut(s)	302
HpyF3I	CTNAG	2 cut(s)	16, 377
HpySE526I	ACGT	1 cut(s)	204
Hsp92II	CATG	3 cut(s)	36, 87, 146
HspAI	GCGC	1 cut(s)	220
KroI	GCCGGC	1 cut(s)	268
KroNI	GCCGGC	1 cut(s)	270
LpnPI	CCDG	9 cut(s)	29, 37, 64, 118, 145, 191, 200, 204, 282
Lsp1109I	GCAGC	1 cut(s)	321
LweI	GCATC	3 cut(s)	255, 346, 352
MaeI	CTAG	2 cut(s)	297, 341
MaeII	ACGT	1 cut(s)	204
MboII	GAAGA	2 cut(s)	61, 164
MhlI	GDGCHC	1 cut(s)	83
MlsI	TGGCCA	1 cut(s)	278
MluNI	TGGCCA	1 cut(s)	278
MlyI	GAGTC	1 cut(s)	101
MmeI	TCCRAC	2 cut(s)	258, 327
MnlI	CCTC	3 cut(s)	134, 157, 184
Mox20I	TGGCCA	1 cut(s)	278
MroNI	GCCGGC	1 cut(s)	268
MscI	TGGCCA	1 cut(s)	278
MseI	TTAA	1 cut(s)	38
Msp20I	TGGCCA	1 cut(s)	278
MspA1I	CMGCKG	1 cut(s)	334
MspI	CCGG	1 cut(s)	269
MspR9I	CCNGG	1 cut(s)	133
MvaI	CCWGG	1 cut(s)	133
MvnI	CGCG	1 cut(s)	158
MwoI	GCNNNNNNNGC	1 cut(s)	302
NaeI	GCCGGC	1 cut(s)	270
NgoMIV	GCCGGC	1 cut(s)	268
NlaIII	CATG	3 cut(s)	36, 87, 146
NlaIV	GGNNCC	2 cut(s)	185, 232
NmeAIII	GCCGAG	1 cut(s)	241
NspV	TTCGAA	1 cut(s)	102
PdiI	GCCGGC	1 cut(s)	270
PfeI	GAWTC	3 cut(s)	47, 56, 257
PkrI	GCNGC	1 cut(s)	336
PleI	GAGTC	1 cut(s)	100
PpsI	GAGTC	1 cut(s)	100
Psp6I	CCWGG	1 cut(s)	131
PspGI	CCWGG	1 cut(s)	131
PspN4I	GGNNCC	2 cut(s)	185, 232
PspPI	GGNCC	1 cut(s)	184
PvuII	CAGCTG	1 cut(s)	334
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SaqAI	TTAA	1 cut(s)	38
SatI	GCNGC	1 cut(s)	335
Sau96I	GGNCC	1 cut(s)	184
SchI	GAGTC	1 cut(s)	101
ScrFI	CCNGG	1 cut(s)	133
SduI	GDGCHC	1 cut(s)	83
SetI	ASST	6 cut(s)	45, 126, 207, 232, 298, 336
SfaNI	GCATC	3 cut(s)	255, 346, 352
SfuI	TTCGAA	1 cut(s)	102
SinI	GGWCC	1 cut(s)	184
SsiI	CCGC	3 cut(s)	97, 158, 305
SspMI	CTAG	2 cut(s)	297, 341
StyD4I	CCNGG	1 cut(s)	131
TaiI	ACGT	1 cut(s)	207
TaqI	TCGA	2 cut(s)	90, 102
TaqII	GACCGA	1 cut(s)	183
TfiI	GAWTC	3 cut(s)	47, 56, 257
Tru1I	TTAA	1 cut(s)	38
Tru9I	TTAA	1 cut(s)	38
TscAI	CASTG	1 cut(s)	185
TseI	GCWGC	1 cut(s)	334
TspDTI	ATGAA	2 cut(s)	249, 306
TspGWI	ACGGA	2 cut(s)	131, 237
TspRI	CASTG	1 cut(s)	185
VpaK11BI	GGWCC	1 cut(s)	184
XspI	CTAG	2 cut(s)	297, 341

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.