Rmu_sc0005201.1_g000006

Amino acid permease

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0005201.1
OG0005525
Physical Location & Seq
Reverse (-)
24739 .. 27764
3026 bp
Loading structure...
UTR
Exon/CDS
Intron
N/A

Sequence Viewer

Length: 1494 bp
atggtgttgagtgaggttgaggctgaatttcaacatgacttatctgaatctggtttgaacaatccggcgaagtacggggaagctggagaagaactacaggtggatgatgatggcaaactcaaaaggactggaacggtatggactgcctgtgcccatataatcacagcatcaataggagctggagtgctatctctagcctgggcaatggcccaactcggatggcttgccggcattttcattctcttgttctgcaccttcgctgctggctacgcttccactctcttagcagattgttacagatttccggacccagtgtcaggcaagagaaactactcctatatggaggctgtcaaagtctatttaggtaaatccattactattgaagttaattcttatcaagtccaacttcccaatgtcgatctaggtggaacaatgcacaagatttgtggatggatgttatatttgaaccttgctaccattggagttggcttcactataaccaccgcaaaaagcttggtggctatacagaagtcgagttgtcatcgcaaaaatggtgcagattctccatgcatgttctccaacattccacatatggttggatttgggcttgttgaaattctcttatcacaactccaaaactttcacaagttgacttggctctctaagcttgcagccatgatgtcttttgtctatgcaactattggaattggactttctctagctaagatcatatcaggggcggaccagtcgtcatcggaaaaaatttggatgatgtttatagcagccggagatattgcatttgcttgctcgtattctcttatcctgtttgatatccaagacacactgaagtcatcgccaccagagaacaaagtgatgaagagggctgtcgttatagggggtttgactatggcattactcttcatgatgtgtggtagcttgggttatgctgcgtttggcaacatcacacccgaaaacctgcttgctggttttggagatgagatgccctgggcattctggctcctggatttggctaatttttgcattgtggtgcacatagttggtgcatttcaggtactgtgccaaccagtgtttcgcattgtcgaactgttggctagaagaaggtggccaaaatccaatttcattaccaaagagaacctggtcatactagggaagatgaagttcaatataaacatgtttaggctgacatggagaacatcctttgtggtgctggtgactgtcattgccatggcaatgccattcttcacagatatgctggctcttctcggagctatcgggtactggcctcttatagtttgtgccccaatagagatgcacattgtgcaaaacaagattcagaaacaaacccttcgctggttcgggctccaactcctgagctttttgtgcttgcttctttccttggccgcggcatctggttccatttatggtctgcataagggtctcggtgcgtacaagctcttccaagttaaagtgtga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Aa_trans

Protein Analysis

497

Amino Acids

54.69

Weight (kDa)

8.61

Isoelectric Point (pI)

44.92

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Aa_trans PF01490 42 - 483 2.2e-93 Transmembrane amino acid transporter protein
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 984
AccII CGCG 1 cut(s) 1424
AccIII TCCGGA 1 cut(s) 304
AciI CCGC 4 cut(s) 504, 740, 1422, 1424
AcoI YGGCCR 2 cut(s) 1124, 1419
AcsI RAATTY 3 cut(s) 26, 615, 762
AcuI CTGAAG 1 cut(s) 866
AdeI CACNNNGTG 1 cut(s) 1339
AfaI GTAC 4 cut(s) 74, 1074, 1298, 1469
AfiI CCNNNNNNNGG 3 cut(s) 317, 1027, 1371
AflIII ACRYGT 1 cut(s) 1191
AgsI TTSAA 6 cut(s) 32, 58, 383, 466, 614, 1183
AhdI GACNNNNNGTC 2 cut(s) 313, 748
AjnI CCWGG 4 cut(s) 197, 1004, 1020, 1155
AjuI GAANNNNNNNTTGG 2 cut(s) 1074, 1106
AluBI AGCT 9 cut(s) 83, 179, 513, 667, 722, 936, 1289, 1395, 1474
AluI AGCT 9 cut(s) 83, 179, 513, 667, 722, 936, 1289, 1395, 1474
Alw21I GWGCWC 1 cut(s) 1053
Alw26I GTCTC 1 cut(s) 1463
Alw44I GTGCAC 1 cut(s) 1049
AlwNI CAGNNNCTG 1 cut(s) 1075
Aor13HI TCCGGA 1 cut(s) 304
AoxI GGCC 4 cut(s) 207, 1124, 1301, 1419
ApaLI GTGCAC 1 cut(s) 1049
ApeKI GCWGC 4 cut(s) 260, 671, 782, 947
ApoI RAATTY 3 cut(s) 26, 615, 762
AspS9I GGNCC 3 cut(s) 208, 307, 742
AsuHPI GGTGA 1 cut(s) 1243
AvaII GGWCC 2 cut(s) 307, 742
BaeGI GKGCMC 3 cut(s) 154, 1053, 1321
BalI TGGCCA 1 cut(s) 1126
BanII GRGCYC 1 cut(s) 1383
BarI GAAGNNNNNNTAC 2 cut(s) 1460, 1492
Bbv12I GWGCWC 1 cut(s) 1053
BbvI GCAGC 4 cut(s) 247, 683, 794, 934
BccI CCATC 3 cut(s) 104, 213, 444
BciT130I CCWGG 4 cut(s) 199, 1006, 1022, 1157
BcoDI GTCTC 1 cut(s) 1463
BfaI CTAG 5 cut(s) 194, 422, 719, 1113, 1166
BfmI CTRYAG 1 cut(s) 95
BfuAI ACCTGC 1 cut(s) 984
BisI GCNGC 6 cut(s) 261, 672, 783, 948, 1422, 1425
BlsI GCNGC 6 cut(s) 262, 673, 784, 949, 1423, 1426
Bme1390I CCNGG 4 cut(s) 199, 1006, 1022, 1157
Bme18I GGWCC 2 cut(s) 307, 742
BmeRI GACNNNNNGTC 2 cut(s) 313, 748
BmgT120I GGNCC 3 cut(s) 208, 307, 742
BmiI GGNNCC 4 cut(s) 309, 1019, 1382, 1435
BmrFI CCNGG 4 cut(s) 199, 1006, 1022, 1157
BmrI ACTGGG 1 cut(s) 305
BmsI GCATC 4 cut(s) 176, 990, 1320, 1436
BmuI ACTGGG 1 cut(s) 305
BpmI CTGGAG 2 cut(s) 105, 201
Bpu10I CCTNAGC 1 cut(s) 1391
BsaI GGTCTC 1 cut(s) 1463
BsaJI CCNNGG 6 cut(s) 198, 1004, 1005, 1245, 1416, 1422
BsaWI WCCGGW 1 cut(s) 304
BsaXI ACNNNNNCTCC 2 cut(s) 168, 198
Bsc4I CCNNNNNNNGG 3 cut(s) 317, 1027, 1371
Bse118I RCCGGY 1 cut(s) 227
Bse1I ACTGG 5 cut(s) 133, 311, 745, 1085, 1304
Bse3DI GCAATG 3 cut(s) 210, 1239, 1257
BseAI TCCGGA 1 cut(s) 304
BseBI CCWGG 4 cut(s) 199, 1006, 1022, 1157
BseDI CCNNGG 6 cut(s) 198, 1004, 1005, 1245, 1416, 1422
BseGI GGATG 6 cut(s) 109, 224, 455, 459, 774, 1214
BseLI CCNNNNNNNGG 3 cut(s) 317, 1027, 1371
BseMI GCAATG 3 cut(s) 210, 1239, 1257
BseMII CTCAG 1 cut(s) 1382
BseNI ACTGG 5 cut(s) 133, 311, 745, 1085, 1304
BseSI GKGCMC 3 cut(s) 154, 1053, 1321
BseXI GCAGC 4 cut(s) 247, 683, 794, 934
BsgI GTGCAG 2 cut(s) 235, 576
Bsh1236I CGCG 1 cut(s) 1424
BshFI GGCC 4 cut(s) 209, 1126, 1303, 1421
BsiHKAI GWGCWC 1 cut(s) 1053
BsiSI CCGG 4 cut(s) 65, 228, 305, 786
BslI CCNNNNNNNGG 3 cut(s) 317, 1027, 1371
BsmAI GTCTC 1 cut(s) 1463
BsmI GAATGC 1 cut(s) 1010
BsnI GGCC 4 cut(s) 209, 1126, 1303, 1421
Bso31I GGTCTC 1 cut(s) 1463
Bsp1286I GDGCHC 4 cut(s) 154, 1053, 1321, 1383
Bsp13I TCCGGA 1 cut(s) 304
Bsp143I GATC 2 cut(s) 418, 726
Bsp19I CCATGG 1 cut(s) 1245
BspACI CCGC 4 cut(s) 504, 740, 1422, 1424
BspANI GGCC 4 cut(s) 209, 1126, 1303, 1421
BspCNI CTCAG 1 cut(s) 1383
BspEI TCCGGA 1 cut(s) 304
BspFNI CGCG 1 cut(s) 1424
BspHI TCATGA 1 cut(s) 921
BspLI GGNNCC 4 cut(s) 309, 1019, 1382, 1435
BspMI ACCTGC 1 cut(s) 984
BspQI GCTCTTC 2 cut(s) 1284, 1481
BspTNI GGTCTC 1 cut(s) 1463
BsrDI GCAATG 3 cut(s) 210, 1239, 1257
BsrFI RCCGGY 1 cut(s) 227
BsrI ACTGG 5 cut(s) 133, 311, 745, 1085, 1304
BssAI RCCGGY 1 cut(s) 227
BssECI CCNNGG 6 cut(s) 198, 1004, 1005, 1245, 1416, 1422
BssMI GATC 2 cut(s) 418, 726
BssT1I CCWWGG 2 cut(s) 1245, 1416
Bst2UI CCWGG 4 cut(s) 199, 1006, 1022, 1157
Bst4CI ACNGT 4 cut(s) 136, 1077, 1107, 1237
Bst6I CTCTTC 4 cut(s) 872, 923, 1284, 1481
BstAPI GCANNNNNTGC 1 cut(s) 1339
BstC8I GCNNGC 8 cut(s) 225, 229, 265, 669, 805, 981, 1275, 1406
BstDEI CTNAG 4 cut(s) 283, 663, 723, 1391
BstDSI CCRYGG 2 cut(s) 1245, 1422
BstF5I GGATG 6 cut(s) 109, 224, 455, 459, 774, 1214
BstFNI CGCG 1 cut(s) 1424
BstKTI GATC 2 cut(s) 421, 729
BstMAI GTCTC 1 cut(s) 1463
BstMBI GATC 2 cut(s) 418, 726
BstMWI GCNNNNNNNGC 4 cut(s) 269, 664, 1339, 1401
BstNI CCWGG 4 cut(s) 199, 1006, 1022, 1157
BstNSI RCATGY 2 cut(s) 574, 1195
BstSCI CCNGG 4 cut(s) 197, 1004, 1020, 1155
BstSFI CTRYAG 1 cut(s) 95
BstSLI GKGCMC 3 cut(s) 154, 1053, 1321
BstUI CGCG 1 cut(s) 1424
BstV1I GCAGC 4 cut(s) 247, 683, 794, 934
BsuRI GGCC 4 cut(s) 209, 1126, 1303, 1421
BtgI CCRYGG 2 cut(s) 1245, 1422
BtgZI GCGATG 2 cut(s) 527, 837
BtsCI GGATG 6 cut(s) 109, 224, 455, 459, 774, 1214
BtsIMutI CAGTG 3 cut(s) 318, 842, 1092
BveI ACCTGC 1 cut(s) 984
Cac8I GCNNGC 8 cut(s) 225, 229, 265, 669, 805, 981, 1275, 1406
CaiI CAGNNNCTG 1 cut(s) 1075
CciI TCATGA 1 cut(s) 921
Cfr10I RCCGGY 1 cut(s) 227
Cfr13I GGNCC 3 cut(s) 208, 307, 742
Cfr42I CCGCGG 1 cut(s) 1425
CsiI ACCWGGT 1 cut(s) 1155
Csp6I GTAC 4 cut(s) 73, 1073, 1297, 1468
CspCI CAANNNNNGTGG 2 cut(s) 427, 462
CviAII CATG 8 cut(s) 35, 567, 571, 676, 922, 1192, 1206, 1246
CviQI GTAC 4 cut(s) 73, 1073, 1297, 1468
DdeI CTNAG 4 cut(s) 283, 663, 723, 1391
DpnI GATC 2 cut(s) 420, 728
DpnII GATC 2 cut(s) 418, 726
DraIII CACNNNGTG 1 cut(s) 1339
DriI GACNNNNNGTC 2 cut(s) 313, 748
EaeI YGGCCR 2 cut(s) 1124, 1419
Eam1104I CTCTTC 4 cut(s) 872, 923, 1284, 1481
Eam1105I GACNNNNNGTC 2 cut(s) 313, 748
EarI CTCTTC 4 cut(s) 872, 923, 1284, 1481
EciI GGCGGA 1 cut(s) 755
Eco130I CCWWGG 2 cut(s) 1245, 1416
Eco24I GRGCYC 1 cut(s) 1383
Eco31I GGTCTC 1 cut(s) 1463
Eco32I GATATC 1 cut(s) 832
Eco47I GGWCC 2 cut(s) 307, 742
Eco57I CTGAAG 1 cut(s) 866
EcoRII CCWGG 4 cut(s) 197, 1004, 1020, 1155
EcoRV GATATC 1 cut(s) 832
EcoT14I CCWWGG 2 cut(s) 1245, 1416
EcoT22I ATGCAT 1 cut(s) 572
EcoT38I GRGCYC 1 cut(s) 1383
ErhI CCWWGG 2 cut(s) 1245, 1416
FaeI CATG 8 cut(s) 38, 570, 574, 679, 925, 1195, 1209, 1249
FalI AAGNNNNNCTT 2 cut(s) 390, 422
FatI CATG 8 cut(s) 34, 566, 570, 675, 921, 1191, 1205, 1245
FauNDI CATATG 1 cut(s) 591
Fnu4HI GCNGC 6 cut(s) 261, 672, 783, 948, 1422, 1425
FokI GGATG 6 cut(s) 116, 231, 462, 466, 781, 1201
FriOI GRGCYC 1 cut(s) 1383
Fsp4HI GCNGC 6 cut(s) 261, 672, 783, 948, 1422, 1425
FspBI CTAG 5 cut(s) 194, 422, 719, 1113, 1166
GluI GCNGC 6 cut(s) 261, 672, 783, 948, 1422, 1425
GsuI CTGGAG 2 cut(s) 105, 201
HaeIII GGCC 4 cut(s) 209, 1126, 1303, 1421
HapII CCGG 4 cut(s) 65, 228, 305, 786
Hin1II CATG 8 cut(s) 38, 570, 574, 679, 925, 1195, 1209, 1249
HincII GTYRAC 1 cut(s) 651
HindII GTYRAC 1 cut(s) 651
HindIII AAGCTT 2 cut(s) 511, 665
HinfI GANTC 3 cut(s) 47, 560, 1351
HpaII CCGG 4 cut(s) 65, 228, 305, 786
HphI GGTGA 1 cut(s) 1243
Hpy166II GTNNAC 2 cut(s) 651, 1051
Hpy188I TCNGA 5 cut(s) 46, 218, 757, 1286, 1356
Hpy188III TCNNGA 3 cut(s) 305, 922, 1390
Hpy8I GTNNAC 2 cut(s) 651, 1051
HpyAV CCTTC 3 cut(s) 265, 1113, 1376
HpyCH4III ACNGT 4 cut(s) 136, 1077, 1107, 1237
HpyF10VI GCNNNNNNNGC 4 cut(s) 269, 664, 1339, 1401
HpyF3I CTNAG 4 cut(s) 283, 663, 723, 1391
Hsp92II CATG 8 cut(s) 38, 570, 574, 679, 925, 1195, 1209, 1249
Kpn2I TCCGGA 1 cut(s) 304
KroI GCCGGC 1 cut(s) 227
KroNI GCCGGC 1 cut(s) 229
KspI CCGCGG 1 cut(s) 1425
Kzo9I GATC 2 cut(s) 418, 726
LguI GCTCTTC 2 cut(s) 1284, 1481
LmnI GCTCC 4 cut(s) 176, 1023, 1286, 1386
Lsp1109I GCAGC 4 cut(s) 247, 683, 794, 934
LweI GCATC 4 cut(s) 176, 990, 1320, 1436
MabI ACCWGGT 1 cut(s) 1155
MaeI CTAG 5 cut(s) 194, 422, 719, 1113, 1166
MaeIII GTNAC 2 cut(s) 293, 1231
MalI GATC 2 cut(s) 420, 728
MboI GATC 2 cut(s) 418, 726
MboII GAAGA 8 cut(s) 101, 889, 910, 1128, 1183, 1252, 1271, 1468
MhlI GDGCHC 4 cut(s) 154, 1053, 1321, 1383
MlsI TGGCCA 1 cut(s) 1126
MluCI AATT 7 cut(s) 26, 388, 615, 705, 762, 1033, 1135
MluNI TGGCCA 1 cut(s) 1126
MmeI TCCRAC 4 cut(s) 427, 577, 603, 1408
MnlI CCTC 5 cut(s) 7, 13, 337, 873, 1314
Mox20I TGGCCA 1 cut(s) 1126
Mph1103I ATGCAT 1 cut(s) 572
MroI TCCGGA 1 cut(s) 304
MroNI GCCGGC 1 cut(s) 227
MscI TGGCCA 1 cut(s) 1126
MseI TTAA 2 cut(s) 387, 1485
MslI CAYNNNNRTG 4 cut(s) 1046, 1244, 1250, 1268
Msp20I TGGCCA 1 cut(s) 1126
MspA1I CMGCKG 1 cut(s) 1424
MspI CCGG 4 cut(s) 65, 228, 305, 786
MspR9I CCNGG 4 cut(s) 199, 1006, 1022, 1157
Mva1269I GAATGC 1 cut(s) 1010
MvaI CCWGG 4 cut(s) 199, 1006, 1022, 1157
MvnI CGCG 1 cut(s) 1424
MwoI GCNNNNNNNGC 4 cut(s) 269, 664, 1339, 1401
NaeI GCCGGC 1 cut(s) 229
NcoI CCATGG 1 cut(s) 1245
NdeI CATATG 1 cut(s) 591
NdeII GATC 2 cut(s) 418, 726
NgoMIV GCCGGC 1 cut(s) 227
NlaIII CATG 8 cut(s) 38, 570, 574, 679, 925, 1195, 1209, 1249
NlaIV GGNNCC 4 cut(s) 309, 1019, 1382, 1435
NmuCI GTSAC 1 cut(s) 1231
NsiI ATGCAT 1 cut(s) 572
NspI RCATGY 2 cut(s) 574, 1195
PagI TCATGA 1 cut(s) 921
PasI CCCWGGG 1 cut(s) 1005
PciI ACATGT 1 cut(s) 1191
PciSI GCTCTTC 2 cut(s) 1284, 1481
PctI GAATGC 1 cut(s) 1010
PdiI GCCGGC 1 cut(s) 229
PfeI GAWTC 3 cut(s) 47, 560, 1351
PfoI TCCNGGA 1 cut(s) 1020
PkrI GCNGC 6 cut(s) 262, 673, 784, 949, 1423, 1426
PscI ACATGT 1 cut(s) 1191
Psp6I CCWGG 4 cut(s) 197, 1004, 1020, 1155
PspGI CCWGG 4 cut(s) 197, 1004, 1020, 1155
PspN4I GGNNCC 4 cut(s) 309, 1019, 1382, 1435
PspPI GGNCC 3 cut(s) 208, 307, 742
PstNI CAGNNNCTG 1 cut(s) 1075
RsaI GTAC 4 cut(s) 74, 1074, 1298, 1469
RsaNI GTAC 4 cut(s) 73, 1073, 1297, 1468
RseI CAYNNNNRTG 4 cut(s) 1046, 1244, 1250, 1268
SacII CCGCGG 1 cut(s) 1425
SapI GCTCTTC 2 cut(s) 1284, 1481
SaqAI TTAA 2 cut(s) 387, 1485
SatI GCNGC 6 cut(s) 261, 672, 783, 948, 1422, 1425
Sau3AI GATC 2 cut(s) 418, 726
Sau96I GGNCC 3 cut(s) 208, 307, 742
ScrFI CCNGG 4 cut(s) 199, 1006, 1022, 1157
SduI GDGCHC 4 cut(s) 154, 1053, 1321, 1383
SexAI ACCWGGT 1 cut(s) 1155
SfaNI GCATC 4 cut(s) 176, 990, 1320, 1436
SfcI CTRYAG 1 cut(s) 95
Sfr303I CCGCGG 1 cut(s) 1425
SgrBI CCGCGG 1 cut(s) 1425
SinI GGWCC 2 cut(s) 307, 742
SmiMI CAYNNNNRTG 4 cut(s) 1046, 1244, 1250, 1268
Sse9I AATT 7 cut(s) 26, 388, 615, 705, 762, 1033, 1135
SsiI CCGC 4 cut(s) 504, 740, 1422, 1424
SspMI CTAG 5 cut(s) 194, 422, 719, 1113, 1166
StyD4I CCNGG 4 cut(s) 197, 1004, 1020, 1155
StyI CCWWGG 2 cut(s) 1245, 1416
TaaI ACNGT 4 cut(s) 136, 1077, 1107, 1237
TaqI TCGA 3 cut(s) 417, 533, 1101
TasI AATT 7 cut(s) 26, 388, 615, 705, 762, 1033, 1135
TauI GCSGC 2 cut(s) 1424, 1427
TfiI GAWTC 3 cut(s) 47, 560, 1351
Tru1I TTAA 2 cut(s) 387, 1485
Tru9I TTAA 2 cut(s) 387, 1485
TscAI CASTG 3 cut(s) 318, 849, 1092
TseFI GTSAC 1 cut(s) 1231
TseI GCWGC 4 cut(s) 260, 671, 782, 947
Tsp45I GTSAC 1 cut(s) 1231
TspDTI ATGAA 5 cut(s) 226, 890, 910, 1129, 1190
TspRI CASTG 3 cut(s) 318, 849, 1092
VneI GTGCAC 1 cut(s) 1049
VpaK11BI GGWCC 2 cut(s) 307, 742
XapI RAATTY 3 cut(s) 26, 615, 762
XceI RCATGY 2 cut(s) 574, 1195
XcmI CCANNNNNNNNNTGG 1 cut(s) 1153
XspI CTAG 5 cut(s) 194, 422, 719, 1113, 1166
Zsp2I ATGCAT 1 cut(s) 572
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.